Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c5_16650 Physcomitrium patens HOM05D000528 ORTHO05D000999 5.8e-144 514.2 265 100.0
Pp3c21_12020 Physcomitrium patens HOM05D000528 ORTHO05D000999 2.6e-91 339.3 263 69.2
Pp3c18_8720 Physcomitrium patens HOM05D000528 ORTHO05D000999 2.9e-82 309.3 262 66.0
Pp3c18_8730 Physcomitrium patens HOM05D000528 ORTHO05D000999 2.9e-82 309.3 262 66.0
Pp3c18_8290 Physcomitrium patens HOM05D000528 ORTHO05D000999 2.4e-81 306.2 258 64.7
Pp3c21_12080 Physcomitrium patens HOM05D000528 ORTHO05D000999 3.1e-44 183.0 121 82.6
Mapoly0003s0171 Marchantia polymorpha HOM05D000528 ORTHO05D000999 2.0e-43 180.3 220 48.2
AagrBONN_evm.TU.Sc2ySwM_117.2707 Anthoceros agrestis HOM05D000528 ORTHO05D000999 4.0e-36 156.0 267 40.8
AagrBONN_evm.TU.Sc2ySwM_117.2712 Anthoceros agrestis HOM05D000528 ORTHO05D000999 4.0e-36 156.0 267 40.8
PSO170G1988 Papaver somniferum HOM05D000528 ORTHO05D000999 4.8e-29 132.5 257 38.5
PSO017G2681 Papaver somniferum HOM05D000528 ORTHO05D000999 8.2e-29 131.7 257 37.7
Pp3c8_19790 Physcomitrium patens HOM05D000528 ORTHO05D000999 8.2e-29 131.7 238 36.6
ATR0006G069 Amborella trichopoda HOM05D000528 ORTHO05D000999 1.8e-28 130.6 254 38.2
Aqoxy6G02695 Aquilegia oxysepala HOM05D000528 ORTHO05D000999 3.4e-27 126.3 221 37.6
Potri.006G216900 Populus trichocarpa HOM05D000528 ORTHO05D000999 3.4e-27 126.3 244 36.5
Sabra06G0167300 Salix brachista HOM05D000528 ORTHO05D000999 7.6e-27 125.2 246 37.0
arahy.Tifrunner.gnm1.ann1.JF9XSQ Arachis hypogaea HOM05D000528 ORTHO05D000999 1.0e-26 124.8 252 34.5
arahy.Tifrunner.gnm1.ann1.Z2MV1Y Arachis hypogaea HOM05D000528 ORTHO05D000999 1.3e-26 124.4 217 37.8
Cfa021584 Carpinus fangiana HOM05D000528 ORTHO05D000999 2.2e-26 123.6 253 36.4
Eucgr.C00756 Eucalyptus grandis HOM05D000528 ORTHO05D000999 5.0e-26 122.5 220 39.5
THA.LOC104810976 Tarenaya hassleriana HOM05D000528 ORTHO05D000999 5.0e-26 122.5 241 38.2
MBI13_g05971_MAGBIO Magnolia biondii HOM05D000528 ORTHO05D000999 6.5e-26 122.1 251 35.9
Lj4g0008783 Lotus japonicus HOM05D000528 ORTHO05D000999 8.4e-26 121.7 260 33.1
TAR626G1794 Trochodendron aralioides HOM05D000528 ORTHO05D000999 1.4e-25 120.9 242 36.8
Zm00001eb107040 Zea mays HOM05D000528 ORTHO05D000999 2.5e-25 120.2 245 35.5
CARHR153370 Cardamine hirsuta HOM05D000528 ORTHO05D000999 3.2e-25 119.8 234 35.0
BcaB02g10779 Brassica carinata HOM05D000528 ORTHO05D000999 4.2e-25 119.4 220 35.5
Actinidia39603 Actinidia chinensis HOM05D000528 ORTHO05D000999 5.5e-25 119.0 256 34.0
Ca_21350_v3 Cicer arietinum L. HOM05D000528 ORTHO05D000999 5.5e-25 119.0 254 32.7
PGR142G1496 Punica granatum HOM05D000528 ORTHO05D000999 5.5e-25 119.0 217 38.7
Rhsim02G0256800 Rhododendron simsii HOM05D000528 ORTHO05D000999 5.5e-25 119.0 229 36.2
VMungo1215G1674 Vigna mungo HOM05D000528 ORTHO05D000999 5.5e-25 119.0 260 34.6
BcaC01g02206 Brassica carinata HOM05D000528 ORTHO05D000999 7.1e-25 118.6 240 35.8
C03p67850 Brassica napus HOM05D000528 ORTHO05D000999 7.1e-25 118.6 240 35.8
BolSC21t60253H Brassica oleracea HOM05D000528 ORTHO05D000999 7.1e-25 118.6 240 35.8
Os07g0564700 Oryza sativa ssp. japonica HOM05D000528 ORTHO05D000999 7.1e-25 118.6 252 34.9
COL.COLO4_21179 Corchorus olitorius HOM05D000528 ORTHO05D000999 1.2e-24 117.9 219 38.8
Manes.03G054900 Manihot esculenta HOM05D000528 ORTHO05D000999 1.6e-24 117.5 221 36.2
TPR.G12643 Trifolium pratense HOM05D000528 ORTHO05D000999 1.6e-24 117.5 269 33.5
Aa31LG4G12930 Aethionema arabicum HOM05D000528 ORTHO05D000999 4.6e-24 115.9 239 33.9
Gohir.A07G018300 Gossypium hirsutum HOM05D000528 ORTHO05D000999 4.6e-24 115.9 226 36.7
Gohir.D07G018100 Gossypium hirsutum HOM05D000528 ORTHO05D000999 4.6e-24 115.9 226 36.3
Gorai.001G018700 Gossypium raimondii HOM05D000528 ORTHO05D000999 4.6e-24 115.9 226 36.3
Peaxi162Scf00006g03411 Petunia axillaris HOM05D000528 ORTHO05D000999 4.6e-24 115.9 231 35.9
A06p26630 Brassica napus HOM05D000528 ORTHO05D000999 6.1e-24 115.5 216 36.6
BraA06t25597Z Brassica rapa HOM05D000528 ORTHO05D000999 6.1e-24 115.5 216 36.6
Duzib150G1295 Durio zibethinus HOM05D000528 ORTHO05D000999 6.1e-24 115.5 250 36.0
CANSAT56G4237 Cannabis sativa HOM05D000528 ORTHO05D000999 7.9e-24 115.2 222 35.6
Migut.F01825 Erythranthe guttata HOM05D000528 ORTHO05D000999 7.9e-24 115.2 256 35.2
Dinv25491 Davidia involucrata HOM05D000528 ORTHO05D000999 1.0e-23 114.8 222 36.9
Thhalv10002369m.g Eutrema salsugineum HOM05D000528 ORTHO05D000999 1.0e-23 114.8 242 34.7
Thecc.09G067600 Theobroma cacao HOM05D000528 ORTHO05D000999 1.3e-23 114.4 226 36.3
Carub.0005s0916 Capsella rubella HOM05D000528 ORTHO05D000999 1.8e-23 114.0 254 32.7
Ciclev10007246m.g Citrus clementina HOM05D000528 ORTHO05D000999 1.8e-23 114.0 247 34.8
DCAR_027484 Daucus carota HOM05D000528 ORTHO05D000999 1.8e-23 114.0 259 32.8
Gohir.D05G038800 Gossypium hirsutum HOM05D000528 ORTHO05D000999 1.8e-23 114.0 229 36.2
EL10Ac9g21127 Beta vulgaris HOM05D000528 ORTHO05D000999 2.3e-23 113.6 251 34.3
Dinv42440 Davidia involucrata HOM05D000528 ORTHO05D000999 2.3e-23 113.6 218 36.2
Gorai.009G039300 Gossypium raimondii HOM05D000528 ORTHO05D000999 2.3e-23 113.6 229 35.8
Lalb_Chr12g0200411 Lupinus albus HOM05D000528 ORTHO05D000999 5.1e-23 112.5 258 32.6
Cc09_g04400 Coffea canephora HOM05D000528 ORTHO05D000999 6.7e-23 112.1 257 34.2
Gohir.A05G037300 Gossypium hirsutum HOM05D000528 ORTHO05D000999 6.7e-23 112.1 229 36.2
MD15G1225500 Malus domestica HOM05D000528 ORTHO05D000999 6.7e-23 112.1 242 35.1
Sp5g17840 Schrenkiella parvula HOM05D000528 ORTHO05D000999 6.7e-23 112.1 242 33.5
Glyma.13G115800 Glycine max HOM05D000528 ORTHO05D000999 8.7e-23 111.7 260 32.7
Nn6g31501 Nelumbo nucifera HOM05D000528 ORTHO05D000999 8.7e-23 111.7 252 34.5
Nitab4.5_0006028g0020 Nicotiana tabacum HOM05D000528 ORTHO05D000999 8.7e-23 111.7 229 33.2
CDE06G2617 Ceratophyllum demersum HOM05D000528 ORTHO05D000999 1.1e-22 111.3 264 36.0
CBR_g5727 Chara braunii HOM05D000528 ORTHO05D000999 1.1e-22 111.3 229 32.8
Phvul.003G126000 Phaseolus vulgaris HOM05D000528 ORTHO05D000999 1.1e-22 111.3 260 32.3
MD02G1105600 Malus domestica HOM05D000528 ORTHO05D000999 1.9e-22 110.5 242 36.4
TWI34G0978 Tripterygium wilfordii HOM05D000528 ORTHO05D000999 1.9e-22 110.5 250 32.8
Manes.16G088500 Manihot esculenta HOM05D000528 ORTHO05D000999 2.5e-22 110.2 225 35.6
Sc03g0004600 Simmondsia chinensis HOM05D000528 ORTHO05D000999 3.3e-22 109.8 251 35.9
AUR62038332 Chenopodium quinoa HOM05D000528 ORTHO05D000999 5.7e-22 109.0 251 33.1
CDE07G1894 Ceratophyllum demersum HOM05D000528 ORTHO05D000999 7.4e-22 108.6 220 35.5
AUR62023914 Chenopodium quinoa HOM05D000528 ORTHO05D000999 7.4e-22 108.6 252 33.7
ECA234G2762 Erigeron canadensis HOM05D000528 ORTHO05D000999 7.4e-22 108.6 262 32.1
HPP92_012349 Vanilla planifolia HOM05D000528 ORTHO05D000999 7.4e-22 108.6 267 33.0
AL5G21370 Arabidopsis lyrata HOM05D000528 ORTHO05D000999 9.7e-22 108.2 242 31.8
TWI63G0826 Tripterygium wilfordii HOM05D000528 ORTHO05D000999 9.7e-22 108.2 244 33.6
Solyc12g017830.3 Solanum lycopersicum HOM05D000528 ORTHO05D000999 1.3e-21 107.8 243 32.9
AT3G43300 Arabidopsis thaliana HOM05D000528 ORTHO05D000999 1.6e-21 107.5 239 32.6
MSTRG.8180 Avicennia marina HOM05D000528 ORTHO05D000999 1.6e-21 107.5 256 32.0
CiPaw.08G000100 Carya illinoinensis HOM05D000528 ORTHO05D000999 1.6e-21 107.5 254 33.9
FAN28G2848 Fragaria x ananassa HOM05D000528 ORTHO05D000999 1.6e-21 107.5 242 33.9
RcHm_v2.0_Chr2g0096511 Rosa chinensis HOM05D000528 ORTHO05D000999 1.6e-21 107.5 252 34.5
unitig_699.g19739 Utricularia gibba HOM05D000528 ORTHO05D000999 1.6e-21 107.5 266 30.1
CAN.G8.14 Capsicum annuum HOM05D000528 ORTHO05D000999 2.2e-21 107.1 242 31.8
FvH4_1g09670 Fragaria vesca HOM05D000528 ORTHO05D000999 2.2e-21 107.1 248 32.7
FAN19G1221 Fragaria x ananassa HOM05D000528 ORTHO05D000999 2.2e-21 107.1 248 32.7
FAN26G1955 Fragaria x ananassa HOM05D000528 ORTHO05D000999 2.2e-21 107.1 248 32.7
Medtr4g124430 Medicago truncatula HOM05D000528 ORTHO05D000999 2.2e-21 107.1 258 29.5
Psat4g020000 Pisum sativum HOM05D000528 ORTHO05D000999 2.2e-21 107.1 268 32.5
Prupe.7G189500 Prunus persica HOM05D000528 ORTHO05D000999 2.2e-21 107.1 240 34.2
Nitab4.5_0000219g0110 Nicotiana tabacum HOM05D000528 ORTHO05D000999 2.8e-21 106.7 232 32.8
THA.LOC104799601 Tarenaya hassleriana HOM05D000528 ORTHO05D000999 2.8e-21 106.7 227 33.9
HanXRQChr16g0521011 Helianthus annuus HOM05D000528 ORTHO05D000999 3.7e-21 106.3 255 31.4
FAN26G3208 Fragaria x ananassa HOM05D000528 ORTHO05D000999 4.8e-21 105.9 263 32.3
Sed0018294 Sechium edule HOM05D000528 ORTHO05D000999 6.3e-21 105.5 254 30.7
Hund00753 Selenicereus undatus HOM05D000528 ORTHO05D000999 8.2e-21 105.1 236 36.0
CsaV3_3G010020 Cucumis sativus L. HOM05D000528 ORTHO05D000999 1.4e-20 104.4 268 30.6
Oeu007685.1 Olea europaea HOM05D000528 ORTHO05D000999 1.8e-20 104.0 253 32.0
SGA_v2.0_scaffold122G33228 Striga asiatica HOM05D000528 ORTHO05D000999 1.8e-20 104.0 243 35.0
Lalb_Chr07g0181491 Lupinus albus HOM05D000528 ORTHO05D000999 2.4e-20 103.6 247 32.4
SalBow3G2418 Salvia bowleyana HOM05D000528 ORTHO05D000999 2.4e-20 103.6 254 31.9
DCAR_023798 Daucus carota HOM05D000528 ORTHO05D000999 3.1e-20 103.2 217 33.6
Sopen12g008630 Solanum pennellii HOM05D000528 ORTHO05D000999 3.1e-20 103.2 230 33.0
GSVIVG01014993001 Vitis vinifera HOM05D000528 ORTHO05D000999 3.1e-20 103.2 218 35.3
ClCG05G002580 Citrullus lanatus HOM05D000528 ORTHO05D000999 6.9e-20 102.1 229 33.2
Glyma.17G044000 Glycine max HOM05D000528 ORTHO05D000999 9.0e-20 101.7 260 31.9
MSTRG.27425 Avicennia marina HOM05D000528 ORTHO05D000999 1.2e-19 101.3 253 32.4
Rhsim05G0000800 Rhododendron simsii HOM05D000528 ORTHO05D000999 1.2e-19 101.3 297 30.6
Sed0012879 Sechium edule HOM05D000528 ORTHO05D000999 1.5e-19 100.9 255 31.4
HanXRQChr01g0017721 Helianthus annuus HOM05D000528 ORTHO05D000999 4.5e-19 99.4 227 30.8
Lsat_1_v5_gn_4_40140 Lactuca sativa HOM05D000528 ORTHO05D000999 4.5e-19 99.4 240 33.3
SalBow1G1474 Salvia bowleyana HOM05D000528 ORTHO05D000999 7.7e-19 98.6 254 29.5
MELO3C006224.2 Cucumis melo HOM05D000528 ORTHO05D000999 1.9e-17 94.0 175 36.6
SGA_v2.0_scaffold13G06349 Striga asiatica HOM05D000528 ORTHO05D000999 3.6e-16 89.7 255 27.1
vmacro06378 Vaccinium macrocarpon HOM05D000528 ORTHO05D000999 1.0e-15 88.2 303 27.7
ECA248G1999 Erigeron canadensis HOM05D000528 ORTHO05D000999 1.3e-13 81.3 249 25.7
unitig_736.g22501 Utricularia gibba HOM05D000528 ORTHO05D000999 8.2e-13 78.6 226 28.8
Pp3c3_32910 Physcomitrium patens HOM05D000528 ORTHO05D019404 1.4e-12 77.8 51 74.5
Cpa.g.sc82.37 Carica papaya HOM05D000528 ORTHO05D000999 1.8e-12 77.4 80 51.2
CSS0007186 Camellia sinensis var. sinensis HOM05D000528 ORTHO05D000999 2.9e-10 70.1 150 33.3
Lj1A1154G40 Lonicera japonica HOM05D000528 ORTHO05D000999 1.9e-09 67.4 226 28.8
Hma1.2p1_0179F.1_g079080 Hydrangea macrophylla HOM05D000528 ORTHO05D000999 1.6e-08 64.3 157 31.8


User provided reference genes

Program Settings