Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c5_14970 Physcomitrium patens HOM05D014246 ORTHO05D017314 1.1e-264 916.0 430 100.0
Pp3c16_12490 Physcomitrium patens HOM05D014246 ORTHO05D017314 1.5e-194 682.9 451 70.5
AagrBONN_evm.TU.Sc2ySwM_369.133 Anthoceros agrestis HOM05D014246 ORTHO05D017314 1.5e-133 480.3 452 49.8
SEGI_20372 Sequoiadendron giganteum HOM05D014246 ORTHO05D017314 9.5e-128 461.1 453 48.3
SMO271G0135 Selaginella moellendorffii HOM05D014246 ORTHO05D017314 8.4e-100 368.2 453 41.7
CBR_g35020 Chara braunii HOM05D014246 ORTHO05D017314 7.6e-93 345.1 405 43.2
Cre13.g585750 Chlamydomonas reinhardtii HOM05D014246 ORTHO05D017314 1.7e-76 290.8 467 36.6
Cre12.g557350 Chlamydomonas reinhardtii HOM05D014246 ORTHO05D017314 9.8e-40 168.7 577 25.6
Pp3c15_18780 Physcomitrium patens HOM05D014246 ORTHO05D318928 3.6e-10 70.5 33 93.9
Cc05_g05920 Coffea canephora HOM05D004713 ORTHO05D005658 6.2e-10 69.7 59 47.5
PRCOL_00002197 Prasinoderma coloniale HOM05D004713 ORTHO05D005658 1.1e-09 68.9 76 43.4
CDE01G0070 Ceratophyllum demersum HOM05D004713 ORTHO05D005658 3.1e-09 67.4 70 40.0
Sed0023828 Sechium edule HOM05D004713 ORTHO05D005658 4.0e-09 67.0 59 45.8
HPP92_001796 Vanilla planifolia HOM05D004713 ORTHO05D005658 4.0e-09 67.0 59 45.8
Ciclev10016706m.g Citrus clementina HOM05D004713 ORTHO05D005658 5.2e-09 66.6 59 45.8
Lsat_1_v5_gn_7_105940 Lactuca sativa HOM05D004713 ORTHO05D005658 5.2e-09 66.6 54 46.3
ClCG02G001400 Citrullus lanatus HOM05D004713 ORTHO05D005658 6.8e-09 66.2 59 45.8
Duzib248G1304 Durio zibethinus HOM05D004713 ORTHO05D005658 6.8e-09 66.2 59 45.8
Glyma.12G199400 Glycine max HOM05D004713 ORTHO05D005658 6.8e-09 66.2 59 45.8
Lalb_Chr14g0366531 Lupinus albus HOM05D004713 ORTHO05D005658 6.8e-09 66.2 59 45.8
Lalb_Chr24g0399801 Lupinus albus HOM05D004713 ORTHO05D005658 6.8e-09 66.2 59 45.8
arahy.Tifrunner.gnm1.ann1.39S8LV Arachis hypogaea HOM05D004713 ORTHO05D005658 8.9e-09 65.9 59 45.8
arahy.Tifrunner.gnm1.ann1.F0UT86 Arachis hypogaea HOM05D004713 ORTHO05D005658 8.9e-09 65.9 59 45.8
arahy.Tifrunner.gnm1.ann1.NN0MZU Arachis hypogaea HOM05D004713 ORTHO05D005658 8.9e-09 65.9 59 45.8
arahy.Tifrunner.gnm1.ann1.V1P8P6 Arachis hypogaea HOM05D004713 ORTHO05D005658 8.9e-09 65.9 59 45.8
Cpa.g.sc34.64 Carica papaya HOM05D004713 ORTHO05D005658 8.9e-09 65.9 59 45.8
Eucgr.A01769 Eucalyptus grandis HOM05D004713 ORTHO05D005658 8.9e-09 65.9 59 45.8
Gohir.A03G160900 Gossypium hirsutum HOM05D004713 ORTHO05D005658 8.9e-09 65.9 59 45.8
Gohir.A03G161000 Gossypium hirsutum HOM05D004713 ORTHO05D005658 8.9e-09 65.9 59 45.8
Gohir.D02G184300 Gossypium hirsutum HOM05D004713 ORTHO05D005658 8.9e-09 65.9 59 45.8
Gohir.D02G184350 Gossypium hirsutum HOM05D004713 ORTHO05D005658 8.9e-09 65.9 59 45.8
Gorai.005G206500 Gossypium raimondii HOM05D004713 ORTHO05D005658 8.9e-09 65.9 59 45.8
Gorai.005G206600 Gossypium raimondii HOM05D004713 ORTHO05D005658 8.9e-09 65.9 59 45.8
MBI18_g36116_MAGBIO Magnolia biondii HOM05D004713 ORTHO05D005658 8.9e-09 65.9 59 44.1
Manes.13G077148 Manihot esculenta HOM05D004713 ORTHO05D005658 8.9e-09 65.9 59 45.8
Manes.14G016000 Manihot esculenta HOM05D004713 ORTHO05D005658 8.9e-09 65.9 59 45.8
PGR042G3467 Punica granatum HOM05D004713 ORTHO05D005658 8.9e-09 65.9 69 40.6
SGA_v2.0_scaffold159G37610 Striga asiatica HOM05D004713 ORTHO05D005658 8.9e-09 65.9 59 44.1
GSVIVG01000453001 Vitis vinifera HOM05D004713 ORTHO05D005658 8.9e-09 65.9 59 45.8
Atru.chr6.3090 Acer truncatum HOM05D004713 ORTHO05D005658 1.2e-08 65.5 59 45.8
Aa31LG5G2780 Aethionema arabicum HOM05D004713 ORTHO05D005658 1.2e-08 65.5 59 44.1
CANSAT11G1961 Cannabis sativa HOM05D004713 ORTHO05D005658 1.2e-08 65.5 59 44.1
CiPaw.11G178400 Carya illinoinensis HOM05D004713 ORTHO05D005658 1.2e-08 65.5 59 44.1
DCAR_008695 Daucus carota HOM05D004713 ORTHO05D005658 1.2e-08 65.5 59 44.1
Duzib132G0433 Durio zibethinus HOM05D004713 ORTHO05D005658 1.2e-08 65.5 59 45.8
ECA240G4341 Erigeron canadensis HOM05D004713 ORTHO05D005658 1.2e-08 65.5 59 44.1
HanXRQChr15g0494521 Helianthus annuus HOM05D004713 ORTHO05D005658 1.2e-08 65.5 44 56.8
Hma1.2p1_2769F.1_g328190 Hydrangea macrophylla HOM05D004713 ORTHO05D005658 1.2e-08 65.5 59 45.8
VMungo1080G0078 Vigna mungo HOM05D004713 ORTHO05D005658 1.2e-08 65.5 59 45.8
Actinidia12471 Actinidia chinensis HOM05D004713 ORTHO05D005658 1.5e-08 65.1 59 44.1
Actinidia18739 Actinidia chinensis HOM05D004713 ORTHO05D005658 1.5e-08 65.1 59 44.1
Actinidia35286 Actinidia chinensis HOM05D004713 ORTHO05D005658 1.5e-08 65.1 59 44.1
ATR1132G116 Amborella trichopoda HOM05D004713 ORTHO05D005658 1.5e-08 65.1 59 44.1
CiPaw.12G123600 Carya illinoinensis HOM05D004713 ORTHO05D005658 1.5e-08 65.1 59 44.1
AUR62025154 Chenopodium quinoa HOM05D004713 ORTHO05D005658 1.5e-08 65.1 59 44.1
AUR62033720 Chenopodium quinoa HOM05D004713 ORTHO05D005658 1.5e-08 65.1 59 44.1
CsaV3_7G004050 Cucumis sativus L. HOM05D004713 ORTHO05D005658 1.5e-08 65.1 59 45.8
Dinv13841 Davidia involucrata HOM05D004713 ORTHO05D005658 1.5e-08 65.1 59 44.1
Glyma.13G302900 Glycine max HOM05D004713 ORTHO05D005658 1.5e-08 65.1 59 45.8
HanXRQChr03g0077251 Helianthus annuus HOM05D004713 ORTHO05D005658 1.5e-08 65.1 59 44.1
HanXRQChr13g0407301 Helianthus annuus HOM05D004713 ORTHO05D005658 1.5e-08 65.1 59 44.1
Hma1.2p1_1258F.1_g270890 Hydrangea macrophylla HOM05D004713 ORTHO05D005658 1.5e-08 65.1 59 44.1
Lsat_1_v5_gn_0_5321 Lactuca sativa HOM05D004713 ORTHO05D005658 1.5e-08 65.1 59 44.1
Potri.013G148900 Populus trichocarpa HOM05D004713 ORTHO05D005658 1.5e-08 65.1 59 45.8
QL08p036617 Quercus lobata HOM05D004713 ORTHO05D005658 1.5e-08 65.1 59 45.8
SalBow7G3919 Salvia bowleyana HOM05D004713 ORTHO05D005658 1.5e-08 65.1 59 44.1
SGA_v2.0_scaffold49G18316 Striga asiatica HOM05D004713 ORTHO05D005658 1.5e-08 65.1 59 44.1
THA.LOC104801189 Tarenaya hassleriana HOM05D004713 ORTHO05D005658 1.5e-08 65.1 59 44.1
Thecc.02G168200 Theobroma cacao HOM05D004713 ORTHO05D005658 1.5e-08 65.1 59 44.1
unitig_85.g27301 Utricularia gibba HOM05D004713 ORTHO05D005658 1.5e-08 65.1 59 44.1
GSVIVG01014457001 Vitis vinifera HOM05D004713 ORTHO05D005658 1.5e-08 65.1 59 44.1
Zm00001eb204410 Zea mays HOM05D004713 ORTHO05D005658 1.5e-08 65.1 59 44.1
Zm00001eb238370 Zea mays HOM05D004713 ORTHO05D005658 1.5e-08 65.1 59 44.1
Ah.01g014440 Amaranthus hybridus HOM05D004713 ORTHO05D005658 2.0e-08 64.7 59 44.1
Lj1A855G17 Lonicera japonica HOM05D004713 ORTHO05D005658 2.0e-08 64.7 59 44.1
Oeu019373.1 Olea europaea HOM05D004713 ORTHO05D005658 2.0e-08 64.7 59 44.1
Os07g0556200 Oryza sativa ssp. japonica HOM05D004713 ORTHO05D005658 2.0e-08 64.7 59 44.1
Potri.019G118500 Populus trichocarpa HOM05D004713 ORTHO05D005658 2.0e-08 64.7 59 45.8
PGR083G1071 Punica granatum HOM05D004713 ORTHO05D005658 2.0e-08 64.7 59 44.1
Hund01214 Selenicereus undatus HOM05D004713 ORTHO05D005658 2.0e-08 64.7 59 44.1
vmacro09572 Vaccinium macrocarpon HOM05D004713 ORTHO05D005658 2.0e-08 64.7 59 44.1
GSVIVG01015713001 Vitis vinifera HOM05D004713 ORTHO05D005658 2.0e-08 64.7 59 44.1
Haze_09549 Corylus avellana HOM05D004713 ORTHO05D005658 2.6e-08 64.3 59 44.1
ECA236G1690 Erigeron canadensis HOM05D004713 ORTHO05D005658 2.6e-08 64.3 44 54.5
Phvul.005G109400 Phaseolus vulgaris HOM05D004713 ORTHO05D005658 2.6e-08 64.3 59 45.8
Sabra13G0120100 Salix brachista HOM05D004713 ORTHO05D005658 2.6e-08 64.3 59 45.8
Sabra19G0119100 Salix brachista HOM05D004713 ORTHO05D005658 2.6e-08 64.3 59 45.8
Sabra19G0134800 Salix brachista HOM05D004713 ORTHO05D005658 2.6e-08 64.3 59 45.8
SMO358G0667 Selaginella moellendorffii HOM05D004713 ORTHO05D005658 2.6e-08 64.3 89 38.2
AL6G49650 Arabidopsis lyrata HOM05D004713 ORTHO05D005658 3.4e-08 63.9 59 44.1
AT4G03280 Arabidopsis thaliana HOM05D004713 ORTHO05D005658 3.4e-08 63.9 59 44.1
BcaB01g01960 Brassica carinata HOM05D004713 ORTHO05D005658 3.4e-08 63.9 59 44.1
BcaB01g02517 Brassica carinata HOM05D004713 ORTHO05D005658 3.4e-08 63.9 59 44.1
BcaC01g06693 Brassica carinata HOM05D004713 ORTHO05D005658 3.4e-08 63.9 59 44.1
BcaC04g23984 Brassica carinata HOM05D004713 ORTHO05D005658 3.4e-08 63.9 59 44.1
A03p30490 Brassica napus HOM05D004713 ORTHO05D005658 3.4e-08 63.9 59 44.1
A09p02620 Brassica napus HOM05D004713 ORTHO05D005658 3.4e-08 63.9 59 44.1
C03p36910 Brassica napus HOM05D004713 ORTHO05D005658 3.4e-08 63.9 59 44.1
C09p02650 Brassica napus HOM05D004713 ORTHO05D005658 3.4e-08 63.9 59 44.1
BolC3t15998H Brassica oleracea HOM05D004713 ORTHO05D005658 3.4e-08 63.9 59 44.1
BolC9t53193H Brassica oleracea HOM05D004713 ORTHO05D005658 3.4e-08 63.9 59 44.1
BraA03t12231Z Brassica rapa HOM05D004713 ORTHO05D005658 3.4e-08 63.9 59 44.1
BraA09t35905Z Brassica rapa HOM05D004713 ORTHO05D005658 3.4e-08 63.9 59 44.1
CSS0013440 Camellia sinensis var. sinensis HOM05D004713 ORTHO05D005658 3.4e-08 63.9 59 44.1
Carub.0006s3378 Capsella rubella HOM05D004713 ORTHO05D005658 3.4e-08 63.9 59 44.1
CAN.G980.4 Capsicum annuum HOM05D004713 ORTHO05D005658 3.4e-08 63.9 59 44.1
CARHR251730 Cardamine hirsuta HOM05D004713 ORTHO05D005658 3.4e-08 63.9 59 44.1
Cfa020490 Carpinus fangiana HOM05D004713 ORTHO05D005658 3.4e-08 63.9 59 44.1
MELO3C018775.2 Cucumis melo HOM05D004713 ORTHO05D005658 3.4e-08 63.9 54 46.3
Thhalv10028941m.g Eutrema salsugineum HOM05D004713 ORTHO05D005658 3.4e-08 63.9 59 44.1
MCO06G171 Micromonas commoda HOM05D004713 ORTHO05D005658 3.4e-08 63.9 45 55.6
Nn1g03832 Nelumbo nucifera HOM05D004713 ORTHO05D005658 3.4e-08 63.9 59 44.1
RhsimUnG0257700 Rhododendron simsii HOM05D004713 ORTHO05D005658 3.4e-08 63.9 59 44.1
Sp6g03320 Schrenkiella parvula HOM05D004713 ORTHO05D005658 3.4e-08 63.9 59 44.1
Solyc12g005630.2 Solanum lycopersicum HOM05D004713 ORTHO05D005658 3.4e-08 63.9 59 44.1
Sopen12g001560 Solanum pennellii HOM05D004713 ORTHO05D005658 3.4e-08 63.9 59 44.1
PGSC0003DMG400013751 Solanum tuberosum HOM05D004713 ORTHO05D005658 3.4e-08 63.9 59 44.1
SEGI_32030 Sequoiadendron giganteum HOM05D004713 ORTHO05D005658 4.4e-08 63.5 59 44.1
MSTRG.6530 Avicennia marina HOM05D004713 ORTHO05D005658 5.8e-08 63.2 59 42.4
Eucgr.F01067 Eucalyptus grandis HOM05D004713 ORTHO05D005658 5.8e-08 63.2 54 44.4
Sc21g0002180 Simmondsia chinensis HOM05D004713 ORTHO05D005658 5.8e-08 63.2 59 42.4
Prupe.3G228100 Prunus persica HOM05D004713 ORTHO05D005658 7.6e-08 62.8 59 44.1
TAR627G1043 Trochodendron aralioides HOM05D004713 ORTHO05D005658 7.6e-08 62.8 59 44.1
CBR_g52397 Chara braunii HOM05D004713 ORTHO05D005658 9.9e-08 62.4 45 53.3
MD09G1098300 Malus domestica HOM05D004713 ORTHO05D005658 9.9e-08 62.4 59 44.1
MD17G1086300 Malus domestica HOM05D004713 ORTHO05D005658 9.9e-08 62.4 59 44.1
FvH4_6g44370 Fragaria vesca HOM05D004713 ORTHO05D005658 1.3e-07 62.0 59 44.1
FAN02G1221 Fragaria x ananassa HOM05D004713 ORTHO05D005658 1.3e-07 62.0 59 44.1
FAN05G5200 Fragaria x ananassa HOM05D004713 ORTHO05D005658 1.3e-07 62.0 59 44.1
FAN05G5597 Fragaria x ananassa HOM05D004713 ORTHO05D005658 1.3e-07 62.0 59 44.1
FAN14G2217 Fragaria x ananassa HOM05D004713 ORTHO05D005658 1.3e-07 62.0 59 44.1
RcHm_v2.0_Chr2g0161301 Rosa chinensis HOM05D004713 ORTHO05D005658 1.3e-07 62.0 59 44.1
Aqoxy1G03926 Aquilegia oxysepala HOM05D004713 ORTHO05D005658 2.2e-07 61.2 59 42.4
Aqoxy1G03929 Aquilegia oxysepala HOM05D004713 ORTHO05D005658 2.2e-07 61.2 59 42.4
Duzib052G0720 Durio zibethinus HOM05D004713 ORTHO05D005658 2.2e-07 61.2 59 44.1
Lj8C161T8 Lonicera japonica HOM05D004713 ORTHO05D005658 2.2e-07 61.2 59 42.4
Lj3g0005468 Lotus japonicus HOM05D004713 ORTHO05D005658 2.2e-07 61.2 59 44.1
Psat5g267960 Pisum sativum HOM05D004713 ORTHO05D005658 2.2e-07 61.2 59 44.1
TWI36G0474 Tripterygium wilfordii HOM05D004713 ORTHO05D005658 2.2e-07 61.2 59 44.1
FAN09G3163 Fragaria x ananassa HOM05D004713 ORTHO05D005658 2.9e-07 60.8 54 44.4
Nitab4.5_0002714g0020 Nicotiana tabacum HOM05D004713 ORTHO05D005658 4.9e-07 60.1 59 42.4
Nitab4.5_0014322g0020 Nicotiana tabacum HOM05D004713 ORTHO05D005658 4.9e-07 60.1 59 42.4
Peaxi162Scf00485g00109 Petunia axillaris HOM05D004713 ORTHO05D005658 4.9e-07 60.1 59 42.4
EL10Ac9g20726 Beta vulgaris HOM05D004713 ORTHO05D005658 6.4e-07 59.7 59 42.4
Mapoly0015s0074 Marchantia polymorpha HOM05D004713 ORTHO05D005658 6.4e-07 59.7 59 42.4
PSO541G4076 Papaver somniferum HOM05D004713 ORTHO05D005658 8.4e-07 59.3 59 42.4
PSO675G3482 Papaver somniferum HOM05D004713 ORTHO05D005658 8.4e-07 59.3 59 42.4
Cre11.g467689 Chlamydomonas reinhardtii HOM05D004713 ORTHO05D005658 1.1e-06 58.9 45 51.1
Migut.M00361 Erythranthe guttata HOM05D004713 ORTHO05D005658 1.1e-06 58.9 59 42.4
Pp3c3_35180 Physcomitrium patens HOM05D004713 ORTHO05D005658 1.1e-06 58.9 45 51.1
Pp3c8_1940 Physcomitrium patens HOM05D004713 ORTHO05D005658 1.1e-06 58.9 45 51.1
Medtr2g089510 Medicago truncatula HOM05D004713 ORTHO05D005658 1.4e-06 58.5 59 42.4
TPR.G18047 Trifolium pratense HOM05D004713 ORTHO05D005658 1.4e-06 58.5 59 42.4
AagrBONN_evm.TU.Sc2ySwM_228.1073 Anthoceros agrestis HOM05D004713 ORTHO05D005658 2.4e-06 57.8 45 51.1


User provided reference genes

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