Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c4_6990 Physcomitrium patens HOM05D003156 ORTHO05D003508 0.0e+00 4597.0 2593 100.0
Pp3c4_7100 Physcomitrium patens HOM05D003156 ORTHO05D003508 0.0e+00 3425.2 2656 75.1
Pp3c12_21290 Physcomitrium patens HOM05D003156 ORTHO05D003508 0.0e+00 1982.2 2632 51.3
Pp3c12_21500 Physcomitrium patens HOM05D003156 ORTHO05D003508 0.0e+00 1479.5 2241 47.7
AagrBONN_evm.TU.Sc2ySwM_228.3670 Anthoceros agrestis HOM05D003156 ORTHO05D003508 3.1e-165 588.2 1911 32.3
Pp3c11_8780 Physcomitrium patens HOM05D003156 ORTHO05D003508 1.2e-95 357.1 1590 28.9
Pp3c11_8790 Physcomitrium patens HOM05D003156 ORTHO05D003508 1.2e-95 357.1 1590 28.9
Pp3c7_16800 Physcomitrium patens HOM05D003156 ORTHO05D003508 1.9e-90 339.7 2236 26.0
SEGI_14984 Sequoiadendron giganteum HOM05D003156 ORTHO05D003508 2.0e-79 303.1 2102 25.0
Mapoly0001s0480 Marchantia polymorpha HOM05D003156 ORTHO05D003508 9.9e-79 300.8 1801 28.3
AagrBONN_evm.TU.Sc2ySwM_203.1 Anthoceros agrestis HOM05D003156 ORTHO05D003508 2.1e-73 283.1 548 38.0
AagrBONN_evm.TU.Sc2ySwM_351.7 Anthoceros agrestis HOM05D003156 ORTHO05D003508 8.1e-73 281.2 548 37.8
AagrBONN_evm.TU.Sc2ySwM_185.8 Anthoceros agrestis HOM05D003156 ORTHO05D003508 4.5e-71 275.4 616 36.0
AagrBONN_evm.TU.Sc2ySwM_351.4 Anthoceros agrestis HOM05D003156 ORTHO05D003508 3.2e-53 216.1 425 37.9
SEGI_14396 Sequoiadendron giganteum HOM05D003156 ORTHO05D003508 6.3e-49 201.8 1160 26.3
PSO339G2433 Papaver somniferum HOM05D003156 ORTHO05D003508 4.4e-42 179.1 608 30.4
Glyma.10G212600 Glycine max HOM05D003156 ORTHO05D003508 7.4e-42 178.3 530 32.3
Lalb_Chr06g0162221 Lupinus albus HOM05D003156 ORTHO05D003508 9.7e-42 177.9 448 34.2
CsaV3_5G025770 Cucumis sativus L. HOM05D003156 ORTHO05D003508 1.3e-41 177.6 542 30.1
Lj1C919T3 Lonicera japonica HOM05D003156 ORTHO05D003508 1.7e-41 177.2 500 31.4
Atru.chr12.725 Acer truncatum HOM05D003156 ORTHO05D003508 2.8e-41 176.4 1009 27.1
CBR_g49682 Chara braunii HOM05D000785 ORTHO05D000231 3.7e-41 176.0 416 33.9
MELO3C002897.2 Cucumis melo HOM05D003156 ORTHO05D003508 8.2e-41 174.9 621 28.8
MD12G1111500 Malus domestica HOM05D003156 ORTHO05D003508 1.1e-40 174.5 494 31.8
VMungo0720G1431 Vigna mungo HOM05D003156 ORTHO05D003508 1.4e-40 174.1 579 30.9
MD01G1110800 Malus domestica HOM05D003156 ORTHO05D003508 1.8e-40 173.7 511 31.7
Nn2g10723 Nelumbo nucifera HOM05D003156 ORTHO05D003508 1.8e-40 173.7 530 29.4
Phvul.007G093100 Phaseolus vulgaris HOM05D003156 ORTHO05D003508 4.1e-40 172.6 627 30.9
Gorai.011G240800 Gossypium raimondii HOM05D003156 ORTHO05D003508 9.1e-40 171.4 533 31.7
Lalb_Chr01g0010131 Lupinus albus HOM05D003156 ORTHO05D003508 9.1e-40 171.4 492 33.1
Lalb_Chr03g0035991 Lupinus albus HOM05D003156 ORTHO05D003508 9.1e-40 171.4 563 31.8
Thecc.10G070400 Theobroma cacao HOM05D003156 ORTHO05D003508 9.1e-40 171.4 1039 26.4
COL.COLO4_23712 Corchorus olitorius HOM05D003156 ORTHO05D003508 1.2e-39 171.0 1018 25.9
Hund19345 Selenicereus undatus HOM05D003156 ORTHO05D003508 1.2e-39 171.0 497 30.8
GSVIVG01016309001 Vitis vinifera HOM05D003156 ORTHO05D003508 1.2e-39 171.0 488 32.2
arahy.Tifrunner.gnm1.ann1.0MFP8V Arachis hypogaea HOM05D003156 ORTHO05D003508 1.6e-39 170.6 543 30.0
Ca_10580_v3 Cicer arietinum L. HOM05D003156 ORTHO05D003508 1.6e-39 170.6 508 31.1
AagrBONN_evm.TU.Sc2ySwM_25.2 Anthoceros agrestis HOM05D003156 ORTHO05D003508 2.0e-39 170.2 259 42.5
PSO384G3096 Papaver somniferum HOM05D003156 ORTHO05D003508 2.0e-39 170.2 601 30.0
arahy.Tifrunner.gnm1.ann1.PUBH8J Arachis hypogaea HOM05D003156 ORTHO05D003508 2.6e-39 169.9 542 30.3
Glyma.20G178500 Glycine max HOM05D003156 ORTHO05D003508 2.6e-39 169.9 550 30.5
Gohir.D10G215300 Gossypium hirsutum HOM05D003156 ORTHO05D003508 2.6e-39 169.9 535 31.8
TAR369G0111 Trochodendron aralioides HOM05D003156 ORTHO05D003508 2.6e-39 169.9 515 30.1
Manes.07G103600 Manihot esculenta HOM05D003156 ORTHO05D003508 4.5e-39 169.1 510 30.6
Gohir.A10G207200 Gossypium hirsutum HOM05D003156 ORTHO05D003508 5.9e-39 168.7 532 31.4
Sed0022604 Sechium edule HOM05D003156 ORTHO05D003508 5.9e-39 168.7 588 30.3
TPR.G36666 Trifolium pratense HOM05D003156 ORTHO05D003508 5.9e-39 168.7 607 29.5
Nn2g13035 Nelumbo nucifera HOM05D003156 ORTHO05D003508 7.7e-39 168.3 569 28.3
AagrBONN_evm.TU.Sc2ySwM_186.2 Anthoceros agrestis HOM05D003156 ORTHO05D003508 2.2e-38 166.8 955 24.7
Lj2g0025480 Lotus japonicus HOM05D003156 ORTHO05D003508 5.0e-38 165.6 533 31.9
FvH4_7g19850 Fragaria vesca HOM05D003156 ORTHO05D003508 8.5e-38 164.9 504 30.0
MBI14_g09786_MAGBIO Magnolia biondii HOM05D003156 ORTHO05D003508 8.5e-38 164.9 939 27.1
Potri.010G220000 Populus trichocarpa HOM05D003156 ORTHO05D003508 1.1e-37 164.5 510 29.4
FAN06G3106 Fragaria x ananassa HOM05D003156 ORTHO05D003508 1.5e-37 164.1 504 29.8
Ciclev10030482m.g Citrus clementina HOM05D003156 ORTHO05D003508 2.5e-37 163.3 1026 25.7
Duzib106G1668 Durio zibethinus HOM05D003156 ORTHO05D003508 3.2e-37 162.9 724 28.6
Gohir.A13G024600 Gossypium hirsutum HOM05D003156 ORTHO05D003508 4.2e-37 162.5 1047 24.9
CAN.G131.2 Capsicum annuum HOM05D003156 ORTHO05D003508 5.5e-37 162.2 508 28.7
Duzib114G0389 Durio zibethinus HOM05D003156 ORTHO05D003508 5.5e-37 162.2 735 26.9
Medtr1g095570 Medicago truncatula HOM05D003156 ORTHO05D003508 5.5e-37 162.2 491 30.5
THA.LOC104819148 Tarenaya hassleriana HOM05D003156 ORTHO05D003508 5.5e-37 162.2 512 30.9
DCAR_006452 Daucus carota HOM05D003156 ORTHO05D003508 7.2e-37 161.8 500 30.0
Sabra10G0169800 Salix brachista HOM05D003156 ORTHO05D003508 7.2e-37 161.8 487 29.8
CANSAT56G0537 Cannabis sativa HOM05D003156 ORTHO05D003508 9.4e-37 161.4 516 31.4
FAN03G0982 Fragaria x ananassa HOM05D003156 ORTHO05D003508 2.1e-36 160.2 505 30.3
Gohir.D13G023500 Gossypium hirsutum HOM05D003156 ORTHO05D003508 2.1e-36 160.2 1048 25.0
Nitab4.5_0000233g0120 Nicotiana tabacum HOM05D003156 ORTHO05D003508 2.1e-36 160.2 514 29.6
Prupe.2G215600 Prunus persica HOM05D003156 ORTHO05D003508 3.6e-36 159.5 493 29.6
Ah.11g043470 Amaranthus hybridus HOM05D003156 ORTHO05D003508 4.7e-36 159.1 1025 26.0
FAN01G2311 Fragaria x ananassa HOM05D003156 ORTHO05D003508 4.7e-36 159.1 494 29.4
Gorai.013G026300 Gossypium raimondii HOM05D003156 ORTHO05D003508 4.7e-36 159.1 1051 25.3
Oeu033854.1 Olea europaea HOM05D003156 ORTHO05D003508 4.7e-36 159.1 431 30.9
Dinv11794 Davidia involucrata HOM05D003156 ORTHO05D003508 6.1e-36 158.7 493 30.4
Lalb_Chr02g0141981 Lupinus albus HOM05D003156 ORTHO05D003508 6.1e-36 158.7 509 29.7
Sed0025548 Sechium edule HOM05D003156 ORTHO05D003508 6.1e-36 158.7 494 30.2
CSS0022533 Camellia sinensis var. sinensis HOM05D003156 ORTHO05D003508 8.0e-36 158.3 504 30.2
Rhsim09G0153200 Rhododendron simsii HOM05D003156 ORTHO05D003508 8.0e-36 158.3 525 30.3
RcHm_v2.0_Chr1g0363841 Rosa chinensis HOM05D003156 ORTHO05D003508 8.0e-36 158.3 513 30.8
Dinv31359 Davidia involucrata HOM05D003156 ORTHO05D003508 1.0e-35 157.9 623 26.5
AUR62020759 Chenopodium quinoa HOM05D003156 ORTHO05D003508 1.4e-35 157.5 1033 24.8
Psat6g185160 Pisum sativum HOM05D003156 ORTHO05D003508 1.8e-35 157.1 511 30.7
Sc20g0001950 Simmondsia chinensis HOM05D003156 ORTHO05D003508 1.8e-35 157.1 1046 26.2
TPR.G1826 Trifolium pratense HOM05D003156 ORTHO05D003508 2.3e-35 156.8 549 30.4
Lalb_Chr19g0129611 Lupinus albus HOM05D003156 ORTHO05D003508 3.0e-35 156.4 553 31.5
QL08p056552 Quercus lobata HOM05D003156 ORTHO05D003508 3.0e-35 156.4 598 29.4
TAR081G0003 Trochodendron aralioides HOM05D003156 ORTHO05D003508 4.0e-35 156.0 637 27.5
Cc02_g11460 Coffea canephora HOM05D003156 ORTHO05D003508 5.2e-35 155.6 588 27.4
Cpa.g.sc53.53 Carica papaya HOM05D003156 ORTHO05D003508 1.2e-34 154.5 544 28.9
Manes.10G044400 Manihot esculenta HOM05D003156 ORTHO05D003508 1.2e-34 154.5 491 30.5
MSTRG.370 Avicennia marina HOM05D003156 ORTHO05D003508 1.5e-34 154.1 683 29.4
Cfa001606 Carpinus fangiana HOM05D003156 ORTHO05D003508 1.5e-34 154.1 713 26.9
SalBow3G0597 Salvia bowleyana HOM05D003156 ORTHO05D003508 3.3e-34 152.9 464 31.0
Aqoxy2G01803 Aquilegia oxysepala HOM05D003156 ORTHO05D003508 4.4e-34 152.5 597 28.5
CiPaw.02G175200 Carya illinoinensis HOM05D003156 ORTHO05D003508 4.4e-34 152.5 443 32.1
ATR0314G007 Amborella trichopoda HOM05D003156 ORTHO05D003508 5.7e-34 152.1 479 31.3
Ca_04674_v3 Cicer arietinum L. HOM05D003156 ORTHO05D003508 7.5e-34 151.8 523 28.7
TWI15G0830 Tripterygium wilfordii HOM05D003156 ORTHO05D003508 7.5e-34 151.8 723 26.0
CSS0000465 Camellia sinensis var. sinensis HOM05D003156 ORTHO05D003508 1.3e-33 151.0 1020 25.3
Nitab4.5_0004081g0040 Nicotiana tabacum HOM05D003156 ORTHO05D003508 6.3e-33 148.7 508 28.3
Potri.008G041900 Populus trichocarpa HOM05D003156 ORTHO05D003508 8.2e-33 148.3 571 27.0
Eucgr.G02815 Eucalyptus grandis HOM05D003156 ORTHO05D003508 1.1e-32 147.9 514 29.8
TAR633G1985 Trochodendron aralioides HOM05D003156 ORTHO05D003508 1.1e-32 147.9 521 29.2
ECA238G0789 Erigeron canadensis HOM05D003156 ORTHO05D003508 3.1e-32 146.4 433 31.2
Lsat_1_v5_gn_2_113740 Lactuca sativa HOM05D003156 ORTHO05D003508 4.1e-32 146.0 445 31.5
THA.LOC104806084 Tarenaya hassleriana HOM05D003156 ORTHO05D003508 4.1e-32 146.0 532 28.6
vmacro04882 Vaccinium macrocarpon HOM05D003156 ORTHO05D003508 9.1e-32 144.8 692 25.7
MSTRG.8149 Avicennia marina HOM05D003156 ORTHO05D003508 2.0e-31 143.7 985 26.0
FAN10G3307 Fragaria x ananassa HOM05D003156 ORTHO05D003508 2.0e-31 143.7 1105 25.0
Lj5g0023323 Lotus japonicus HOM05D003156 ORTHO05D003508 2.0e-31 143.7 1234 25.1
Migut.F01767 Erythranthe guttata HOM05D003156 ORTHO05D003508 2.7e-31 143.3 536 28.2
Oeu007399.2 Olea europaea HOM05D003156 ORTHO05D003508 2.7e-31 143.3 1052 24.3
SGA_v2.0_scaffold341G49358 Striga asiatica HOM05D003156 ORTHO05D003508 2.7e-31 143.3 439 31.2
Zm00001eb355010 Zea mays HOM05D003156 ORTHO05D003508 3.5e-31 142.9 575 28.7
Sed0017215 Sechium edule HOM05D003156 ORTHO05D003508 4.5e-31 142.5 476 27.9
AUR62027953 Chenopodium quinoa HOM05D003156 ORTHO05D003508 5.9e-31 142.1 1116 24.3
HanXRQChr11g0323301 Helianthus annuus HOM05D003156 ORTHO05D003508 5.9e-31 142.1 470 28.5
Aa31LG10G7350 Aethionema arabicum HOM05D003156 ORTHO05D003508 7.7e-31 141.7 500 28.2
Medtr6g033350 Medicago truncatula HOM05D003156 ORTHO05D003508 7.7e-31 141.7 347 33.4
HanXRQChr14g0457261 Helianthus annuus HOM05D003156 ORTHO05D003508 1.0e-30 141.4 548 28.1
PGR142G2490 Punica granatum HOM05D003156 ORTHO05D003508 1.0e-30 141.4 1199 24.9
Sabra08G0028800 Salix brachista HOM05D003156 ORTHO05D003508 1.3e-30 141.0 1116 24.4
EL10Ac2g03591 Beta vulgaris HOM05D003156 ORTHO05D003508 3.8e-30 139.4 1044 25.8
Zm00001eb265240 Zea mays HOM05D003156 ORTHO05D003508 3.8e-30 139.4 1017 24.6
Lsat_1_v5_gn_2_113780 Lactuca sativa HOM05D003156 ORTHO05D003508 5.0e-30 139.0 206 39.8
Oeu042736.1 Olea europaea HOM05D003156 ORTHO05D003508 5.0e-30 139.0 521 27.8
SalBow4G2724 Salvia bowleyana HOM05D003156 ORTHO05D003508 8.5e-30 138.3 519 29.5
Sed0017725 Sechium edule HOM05D003156 ORTHO05D003508 1.1e-29 137.9 467 28.7
CiPaw.01G274600 Carya illinoinensis HOM05D003156 ORTHO05D003508 1.9e-29 137.1 435 31.7
CDE02G1002 Ceratophyllum demersum HOM05D003156 ORTHO05D003508 1.9e-29 137.1 437 30.2
CsaV3_5G036430 Cucumis sativus L. HOM05D003156 ORTHO05D003508 2.5e-29 136.7 1116 24.6
C08p27500 Brassica napus HOM05D003156 ORTHO05D003508 5.5e-29 135.6 541 29.2
SGA_v2.0_scaffold51G18682 Striga asiatica HOM05D003156 ORTHO05D003508 5.5e-29 135.6 371 32.1
Aa31csc81G40 Aethionema arabicum HOM05D003156 ORTHO05D003508 7.2e-29 135.2 522 26.4
unitig_0.g194 Utricularia gibba HOM05D003156 ORTHO05D003508 9.4e-29 134.8 497 28.0
ClCG05G020880 Citrullus lanatus HOM05D003156 ORTHO05D003508 1.2e-28 134.4 1055 24.2
BraA09t39994Z Brassica rapa HOM05D003156 ORTHO05D003508 2.1e-28 133.7 536 29.1
CARHR162010 Cardamine hirsuta HOM05D003156 ORTHO05D003508 2.1e-28 133.7 516 28.1
Thhalv10010054m.g Eutrema salsugineum HOM05D003156 ORTHO05D003508 2.1e-28 133.7 593 28.0
Peaxi162Scf00108g00911 Petunia axillaris HOM05D003156 ORTHO05D003508 2.1e-28 133.7 545 26.4
Sp5g10010 Schrenkiella parvula HOM05D003156 ORTHO05D003508 2.7e-28 133.3 549 27.1
AL5G32840 Arabidopsis lyrata HOM05D003156 ORTHO05D003508 3.6e-28 132.9 524 29.0
A03p48760 Brassica napus HOM05D003156 ORTHO05D003508 4.7e-28 132.5 564 28.2
A09p45310 Brassica napus HOM05D003156 ORTHO05D003508 4.7e-28 132.5 536 29.1
Oeu014390.1 Olea europaea HOM05D003156 ORTHO05D003508 6.1e-28 132.1 529 27.8
CSS0028910 Camellia sinensis var. sinensis HOM05D003156 ORTHO05D003508 1.0e-27 131.3 499 29.1
BraA03t13976Z Brassica rapa HOM05D003156 ORTHO05D003508 1.4e-27 131.0 544 28.1
Ah.10g032860 Amaranthus hybridus HOM05D003156 ORTHO05D003508 1.8e-27 130.6 493 28.8
BolC8t50370H Brassica oleracea HOM05D003156 ORTHO05D003508 3.0e-27 129.8 540 28.7
C07p46850 Brassica napus HOM05D003156 ORTHO05D003508 4.0e-27 129.4 591 27.1
BolC7t45201H Brassica oleracea HOM05D003156 ORTHO05D003508 4.0e-27 129.4 591 27.1
AT3G52250 Arabidopsis thaliana HOM05D003156 ORTHO05D003508 5.2e-27 129.0 450 30.7
Actinidia38262 Actinidia chinensis HOM05D003156 ORTHO05D003508 6.8e-27 128.6 935 24.3
Carub.0005s1861 Capsella rubella HOM05D003156 ORTHO05D003508 1.5e-26 127.5 562 27.2
DCAR_019123 Daucus carota HOM05D003156 ORTHO05D003508 1.5e-26 127.5 775 26.3
Oeu043931.1 Olea europaea HOM05D003156 ORTHO05D003508 2.6e-26 126.7 489 26.8
PGR044G0836 Punica granatum HOM05D003156 ORTHO05D003508 5.7e-26 125.6 236 34.3
Solyc04g049120.4 Solanum lycopersicum HOM05D003156 ORTHO05D003508 7.5e-26 125.2 270 33.3
Actinidia03046 Actinidia chinensis HOM05D003156 ORTHO05D003508 9.8e-26 124.8 446 29.4
CDE09G0617 Ceratophyllum demersum HOM05D003156 ORTHO05D003508 9.8e-26 124.8 561 27.8
Gohir.D05G297300 Gossypium hirsutum HOM05D003156 ORTHO05D003508 1.7e-25 124.0 516 29.3
Actinidia38263 Actinidia chinensis HOM05D003156 ORTHO05D003508 4.8e-25 122.5 498 29.7
MELO3C012441.2 Cucumis melo HOM05D003156 ORTHO05D003508 4.8e-25 122.5 1122 23.6
Sopen04g018550 Solanum pennellii HOM05D003156 ORTHO05D003508 1.1e-24 121.3 1106 24.1
VMungo0464G1901 Vigna mungo HOM05D003156 ORTHO05D003508 4.5e-23 115.9 309 31.1
AagrBONN_evm.TU.Sc2ySwM_186.4 Anthoceros agrestis HOM05D003156 ORTHO05D003508 5.9e-23 115.5 98 67.3
AagrBONN_evm.TU.Sc2ySwM_351.5 Anthoceros agrestis HOM05D003156 ORTHO05D003508 5.9e-23 115.5 98 67.3
Psat7g135120 Pisum sativum HOM05D003156 ORTHO05D003508 5.9e-23 115.5 125 46.4
unitig_60.g25704 Utricularia gibba HOM05D003156 ORTHO05D003508 7.7e-23 115.2 396 29.3
Haze_16918 Corylus avellana HOM05D003156 ORTHO05D003508 1.3e-22 114.4 319 32.9
Gohir.A05G297400 Gossypium hirsutum HOM05D003156 ORTHO05D003508 1.7e-22 114.0 226 35.0
SMO361G0003 Selaginella moellendorffii HOM05D003156 ORTHO05D003508 6.1e-20 105.5 84 58.3
SMO361G0517 Selaginella moellendorffii HOM05D003156 ORTHO05D003508 6.1e-20 105.5 84 58.3
Glyma.13G071701 Glycine max HOM05D003156 ORTHO05D003508 2.0e-18 100.5 97 48.5
MCO13G549 Micromonas commoda HOM05D003156 ORTHO05D003508 8.3e-17 95.1 198 35.4
Actinidia03045 Actinidia chinensis HOM05D003156 ORTHO05D003508 9.2e-16 91.7 89 48.3
Actinidia08029 Actinidia chinensis HOM05D003156 ORTHO05D003508 2.7e-15 90.1 88 48.9
Actinidia08031 Actinidia chinensis HOM05D003156 ORTHO05D003508 2.9e-14 86.7 374 25.7
Psat1g100160 Pisum sativum HOM05D003156 ORTHO05D003508 1.5e-10 74.3 483 26.7
Cre06.g264400 Chlamydomonas reinhardtii HOM05D003156 ORTHO05D003508 2.9e-09 70.1 79 44.3
HPP92_006757 Vanilla planifolia HOM05D003156 ORTHO05D003508 1.6e-07 64.3 735 20.3


User provided reference genes

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