Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c4_5260 Physcomitrium patens HOM05D006113 ORTHO05D007828 6.5e-230 800.4 421 100.0
Pp3c12_11290 Physcomitrium patens HOM05D006113 ORTHO05D007828 3.8e-145 518.8 555 56.2
Mapoly0097s0089 Marchantia polymorpha HOM05D006113 ORTHO05D007828 2.9e-73 280.0 463 39.7
SMO356G0179 Selaginella moellendorffii HOM05D006113 ORTHO05D007828 7.5e-69 265.4 470 38.7
AagrBONN_evm.TU.Sc2ySwM_228.790 Anthoceros agrestis HOM05D006113 ORTHO05D007828 4.9e-68 262.7 523 37.1
CANSAT21G0754 Cannabis sativa HOM05D006113 ORTHO05D007828 1.9e-64 250.8 459 37.3
Eucgr.E00301 Eucalyptus grandis HOM05D006113 ORTHO05D007828 1.9e-64 250.8 454 37.0
Gohir.D08G178600 Gossypium hirsutum HOM05D006113 ORTHO05D007828 2.1e-63 247.3 469 36.2
Cc08_g02430 Coffea canephora HOM05D006113 ORTHO05D007828 4.7e-63 246.1 435 37.5
Gorai.004G186900 Gossypium raimondii HOM05D006113 ORTHO05D007828 1.1e-62 245.0 469 36.0
Thecc.03G231000 Theobroma cacao HOM05D006113 ORTHO05D007828 1.4e-62 244.6 450 37.3
Gohir.A08G158300 Gossypium hirsutum HOM05D006113 ORTHO05D007828 4.0e-62 243.0 469 35.8
Sabra01G0112900 Salix brachista HOM05D006113 ORTHO05D007828 5.2e-62 242.7 461 37.1
COL.COLO4_17073 Corchorus olitorius HOM05D006113 ORTHO05D007828 8.9e-62 241.9 447 36.7
Potri.001G144500 Populus trichocarpa HOM05D006113 ORTHO05D007828 1.2e-61 241.5 471 37.2
SEGI_13135 Sequoiadendron giganteum HOM05D006113 ORTHO05D007828 1.5e-61 241.1 444 34.7
Migut.E01131 Erythranthe guttata HOM05D006113 ORTHO05D007828 4.4e-61 239.6 449 36.7
TWI60G1370 Tripterygium wilfordii HOM05D006113 ORTHO05D007828 7.5e-61 238.8 464 36.4
GSVIVG01013180001 Vitis vinifera HOM05D006113 ORTHO05D007828 7.5e-61 238.8 464 35.3
CsaV3_3G049370 Cucumis sativus L. HOM05D006113 ORTHO05D007828 1.3e-60 238.0 444 36.5
Atru.chr6.1754 Acer truncatum HOM05D006113 ORTHO05D007828 2.2e-60 237.3 444 36.5
CAN.G845.35 Capsicum annuum HOM05D006113 ORTHO05D007828 2.2e-60 237.3 449 36.5
PGR042G1735 Punica granatum HOM05D006113 ORTHO05D007828 2.9e-60 236.9 458 36.2
Manes.05G117026 Manihot esculenta HOM05D006113 ORTHO05D007828 3.7e-60 236.5 460 37.0
Oeu062745.2 Olea europaea HOM05D006113 ORTHO05D007828 3.7e-60 236.5 443 35.4
Potri.003G089700 Populus trichocarpa HOM05D006113 ORTHO05D007828 3.7e-60 236.5 461 36.7
Nitab4.5_0000535g0010 Nicotiana tabacum HOM05D006113 ORTHO05D007828 4.9e-60 236.1 441 36.3
MELO3C003389.2 Cucumis melo HOM05D006113 ORTHO05D007828 6.4e-60 235.7 444 36.5
Sopen08g002980 Solanum pennellii HOM05D006113 ORTHO05D007828 6.4e-60 235.7 440 35.2
CSS0019238 Camellia sinensis var. sinensis HOM05D006113 ORTHO05D007828 8.3e-60 235.3 445 36.0
CSS0023186 Camellia sinensis var. sinensis HOM05D006113 ORTHO05D007828 8.3e-60 235.3 445 36.0
FvH4_6g31710 Fragaria vesca HOM05D006113 ORTHO05D007828 1.1e-59 235.0 441 35.8
Sed0027774 Sechium edule HOM05D006113 ORTHO05D007828 1.1e-59 235.0 461 35.6
DCAR_008285 Daucus carota HOM05D006113 ORTHO05D007828 1.4e-59 234.6 469 35.2
Duzib205G1867 Durio zibethinus HOM05D006113 ORTHO05D007828 1.4e-59 234.6 447 36.2
CBR_g5705 Chara braunii HOM05D006113 ORTHO05D007828 1.9e-59 234.2 457 36.8
HanXRQChr06g0167341 Helianthus annuus HOM05D006113 ORTHO05D007828 1.9e-59 234.2 448 35.0
Peaxi162Scf00102g00639 Petunia axillaris HOM05D006113 ORTHO05D007828 1.9e-59 234.2 443 35.7
Dinv28932 Davidia involucrata HOM05D006113 ORTHO05D007828 2.4e-59 233.8 442 36.0
Rhsim07G0124800 Rhododendron simsii HOM05D006113 ORTHO05D007828 2.4e-59 233.8 442 36.9
TWI81G0082 Tripterygium wilfordii HOM05D006113 ORTHO05D007828 2.4e-59 233.8 444 36.7
MD09G1232600 Malus domestica HOM05D006113 ORTHO05D007828 3.2e-59 233.4 459 35.5
Prupe.1G552500 Prunus persica HOM05D006113 ORTHO05D007828 3.2e-59 233.4 439 36.0
CiPaw.11G091200 Carya illinoinensis HOM05D006113 ORTHO05D007828 4.1e-59 233.0 462 35.9
SalBow1G7584 Salvia bowleyana HOM05D006113 ORTHO05D007828 5.4e-59 232.6 441 36.1
PGSC0003DMG400020501 Solanum tuberosum HOM05D006113 ORTHO05D007828 5.4e-59 232.6 445 34.8
CSS0010269 Camellia sinensis var. sinensis HOM05D006113 ORTHO05D007828 7.0e-59 232.3 442 35.7
SGA_v2.0_scaffold385G50460 Striga asiatica HOM05D006113 ORTHO05D007828 7.0e-59 232.3 443 34.1
HanXRQChr17g0535731 Helianthus annuus HOM05D006113 ORTHO05D007828 1.6e-58 231.1 455 34.9
Sc22g0001480 Simmondsia chinensis HOM05D006113 ORTHO05D007828 1.6e-58 231.1 440 34.3
Lsat_1_v5_gn_3_16601 Lactuca sativa HOM05D006113 ORTHO05D007828 2.1e-58 230.7 460 35.4
Medtr5g014290 Medicago truncatula HOM05D006113 ORTHO05D007828 2.1e-58 230.7 479 34.2
Hund14417 Selenicereus undatus HOM05D006113 ORTHO05D007828 2.7e-58 230.3 447 36.0
Ciclev10031360m.g Citrus clementina HOM05D006113 ORTHO05D007828 3.5e-58 229.9 434 37.3
vmacro14161 Vaccinium macrocarpon HOM05D006113 ORTHO05D007828 3.5e-58 229.9 443 35.7
CBR_g5706 Chara braunii HOM05D006113 ORTHO05D007828 6.0e-58 229.2 453 36.9
ECA246G3200 Erigeron canadensis HOM05D006113 ORTHO05D007828 7.8e-58 228.8 454 34.8
EL10Ac1g02288 Beta vulgaris HOM05D006113 ORTHO05D007828 1.0e-57 228.4 428 35.7
Lalb_Chr05g0214021 Lupinus albus HOM05D006113 ORTHO05D007828 2.3e-57 227.3 444 35.8
MBI18_g17018_MAGBIO Magnolia biondii HOM05D006113 ORTHO05D007828 2.3e-57 227.3 448 35.7
FAN02G2000 Fragaria x ananassa HOM05D006113 ORTHO05D007828 3.0e-57 226.9 438 35.2
THA.LOC104814434 Tarenaya hassleriana HOM05D006113 ORTHO05D007828 3.0e-57 226.9 467 34.3
MSTRG.12007 Avicennia marina HOM05D006113 ORTHO05D007828 8.6e-57 225.3 442 33.5
THA.LOC104807962 Tarenaya hassleriana HOM05D006113 ORTHO05D007828 8.6e-57 225.3 453 34.0
HPP92_003349 Vanilla planifolia HOM05D006113 ORTHO05D007828 8.6e-57 225.3 453 37.1
Cfa012411 Carpinus fangiana HOM05D006113 ORTHO05D007828 1.1e-56 224.9 464 34.9
AL1G46750 Arabidopsis lyrata HOM05D006113 ORTHO05D007828 1.5e-56 224.6 465 34.2
FAN05G0306 Fragaria x ananassa HOM05D006113 ORTHO05D007828 1.5e-56 224.6 438 35.2
Aa31LG2G13450 Aethionema arabicum HOM05D006113 ORTHO05D007828 1.9e-56 224.2 471 33.1
A05p24790 Brassica napus HOM05D006113 ORTHO05D007828 1.9e-56 224.2 460 33.5
BraA05t21362Z Brassica rapa HOM05D006113 ORTHO05D007828 1.9e-56 224.2 460 33.5
AT1G32500 Arabidopsis thaliana HOM05D006113 ORTHO05D007828 2.5e-56 223.8 468 32.9
FAN09G0007 Fragaria x ananassa HOM05D006113 ORTHO05D007828 2.5e-56 223.8 438 34.9
BcaB03g13726 Brassica carinata HOM05D006113 ORTHO05D007828 4.3e-56 223.0 457 33.5
Lj2g0019507 Lotus japonicus HOM05D006113 ORTHO05D007828 4.3e-56 223.0 449 34.7
BolC5t32582H Brassica oleracea HOM05D006113 ORTHO05D007828 7.3e-56 222.2 461 33.0
Lj8A291G57 Lonicera japonica HOM05D006113 ORTHO05D007828 9.5e-56 221.9 415 36.4
RcHm_v2.0_Chr6g0269051 Rosa chinensis HOM05D006113 ORTHO05D007828 1.2e-55 221.5 442 34.4
arahy.Tifrunner.gnm1.ann1.C9Y7N1 Arachis hypogaea HOM05D006113 ORTHO05D007828 1.6e-55 221.1 446 34.3
arahy.Tifrunner.gnm1.ann1.LSM77P Arachis hypogaea HOM05D006113 ORTHO05D007828 1.6e-55 221.1 446 34.3
Carub.0001s3091 Capsella rubella HOM05D006113 ORTHO05D007828 1.6e-55 221.1 453 33.3
CARHR031950 Cardamine hirsuta HOM05D006113 ORTHO05D007828 1.6e-55 221.1 468 33.8
BcaC05g27850 Brassica carinata HOM05D006113 ORTHO05D007828 6.2e-55 219.2 461 32.8
C05p38480 Brassica napus HOM05D006113 ORTHO05D007828 6.2e-55 219.2 461 32.8
Thhalv10007401m.g Eutrema salsugineum HOM05D006113 ORTHO05D007828 6.2e-55 219.2 442 34.2
Ah.12g054610 Amaranthus hybridus HOM05D006113 ORTHO05D007828 1.8e-54 217.6 446 34.3
Aqoxy3G00478 Aquilegia oxysepala HOM05D006113 ORTHO05D007828 1.2e-53 214.9 455 34.1
VMungo1215G1026 Vigna mungo HOM05D006113 ORTHO05D007828 4.4e-53 213.0 427 34.2
unitig_52.g17240 Utricularia gibba HOM05D006113 ORTHO05D007828 7.5e-53 212.2 447 34.0
Nitab4.5_0000804g0060 Nicotiana tabacum HOM05D006113 ORTHO05D007828 4.9e-52 209.5 398 35.7
AUR62007248 Chenopodium quinoa HOM05D006113 ORTHO05D007828 6.4e-52 209.1 402 34.8
Phvul.002G006200 Phaseolus vulgaris HOM05D006113 ORTHO05D007828 1.4e-51 208.0 424 34.2
Sp1g28400 Schrenkiella parvula HOM05D006113 ORTHO05D007828 1.9e-51 207.6 453 32.2
Glyma.11G042400 Glycine max HOM05D006113 ORTHO05D007828 7.1e-51 205.7 429 34.5
Haze_08267 Corylus avellana HOM05D006113 ORTHO05D007828 2.1e-50 204.1 500 31.8
PSO017G4443 Papaver somniferum HOM05D006113 ORTHO05D007828 2.7e-50 203.8 451 33.0
PSO478G3605 Papaver somniferum HOM05D006113 ORTHO05D007828 3.3e-48 196.8 451 32.4
Ca_24644_v3 Cicer arietinum L. HOM05D006113 ORTHO05D007828 8.1e-47 192.2 350 36.9
Solyc08g007010.4 Solanum lycopersicum HOM05D006113 ORTHO05D007828 1.4e-46 191.4 139 67.6
Cre12.g513950 Chlamydomonas reinhardtii HOM05D006113 ORTHO05D007828 8.9e-46 188.7 420 33.3
ATR0680G232 Amborella trichopoda HOM05D006113 ORTHO05D007828 2.0e-45 187.6 143 65.7
Os01g0127300 Oryza sativa ssp. japonica HOM05D006113 ORTHO05D007828 4.4e-45 186.4 522 32.0
GSVIVG01015822001 Vitis vinifera HOM05D006113 ORTHO05D007828 6.4e-44 182.6 139 66.2
QL12p006235 Quercus lobata HOM05D006113 ORTHO05D007828 8.4e-44 182.2 139 66.9
TPR.G7828 Trifolium pratense HOM05D006113 ORTHO05D007828 2.4e-43 180.6 141 65.2
Zm00001eb335220 Zea mays HOM05D006113 ORTHO05D007828 5.4e-43 179.5 440 31.6
AUR62018750 Chenopodium quinoa HOM05D006113 ORTHO05D007828 2.1e-42 177.6 121 71.9
Cpa.g.c32163 Carica papaya HOM05D006113 ORTHO05D007828 1.0e-41 175.3 116 73.3
PRCOL_00003470 Prasinoderma coloniale HOM05D006113 ORTHO05D007828 5.6e-40 169.5 440 31.8
MCO11G391 Micromonas commoda HOM05D006113 ORTHO05D007828 1.7e-36 157.9 126 59.5
Sed0023119 Sechium edule HOM05D006113 ORTHO05D007828 3.9e-33 146.7 131 60.3
ClCG09G012190 Citrullus lanatus HOM05D006113 ORTHO05D007828 8.4e-28 129.0 103 66.0
PSO478G2563 Papaver somniferum HOM05D006113 ORTHO05D007828 3.2e-27 127.1 445 26.7
TAR371G1082 Trochodendron aralioides HOM05D006113 ORTHO05D007828 2.7e-26 124.0 99 64.6
ClCG09G012180 Citrullus lanatus HOM05D006113 ORTHO05D007828 1.3e-25 121.7 357 28.6
Nn3g17324 Nelumbo nucifera HOM05D006113 ORTHO05D007828 1.8e-25 121.3 343 30.0
Glyma.01G199500 Glycine max HOM05D006113 ORTHO05D007828 8.7e-25 119.0 141 49.6
Psat2g173560 Pisum sativum HOM05D006113 ORTHO05D007828 8.7e-25 119.0 380 26.8
QL12p004317 Quercus lobata HOM05D006113 ORTHO05D007828 1.7e-20 104.8 65 76.9
TAR371G0010 Trochodendron aralioides HOM05D006113 ORTHO05D007828 1.6e-18 98.2 216 31.0
Cpa.g.sc90.55 Carica papaya HOM05D006113 ORTHO05D007828 2.5e-16 90.9 241 29.9
AUR62018751 Chenopodium quinoa HOM05D006113 ORTHO05D007828 2.8e-15 87.4 216 30.1
TPR.G17447 Trifolium pratense HOM05D006113 ORTHO05D007828 6.5e-12 76.3 210 27.1
SMO234G0017 Selaginella moellendorffii HOM05D000840 ORTHO05D000670 2.8e-07 60.8 65 47.7


User provided reference genes

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