Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c4_31210 Physcomitrium patens HOM05D004813 ORTHO05D005889 1.9e-278 962.2 618 100.0
Mapoly0077s0037 Marchantia polymorpha HOM05D004813 ORTHO05D005889 2.2e-93 347.4 624 45.4
CSS0044871 Camellia sinensis var. sinensis HOM05D004813 ORTHO05D005889 3.6e-88 330.1 530 49.6
CSS0009747 Camellia sinensis var. sinensis HOM05D004813 ORTHO05D005889 4.0e-87 326.6 531 49.5
MBI16_g39216_MAGBIO Magnolia biondii HOM05D004813 ORTHO05D005889 9.0e-87 325.5 529 47.1
Phvul.003G201700 Phaseolus vulgaris HOM05D004813 ORTHO05D005889 7.6e-86 322.4 523 48.8
Nn4g22713 Nelumbo nucifera HOM05D004813 ORTHO05D005889 2.2e-85 320.9 550 45.6
Cc04_g12130 Coffea canephora HOM05D004813 ORTHO05D005889 8.4e-85 318.9 538 47.4
Cpa.g.sc76.31 Carica papaya HOM05D004813 ORTHO05D005889 1.9e-84 317.8 535 51.4
MBI17_g17505_MAGBIO Magnolia biondii HOM05D004813 ORTHO05D005889 1.9e-84 317.8 557 49.2
CsaV3_1G000640 Cucumis sativus L. HOM05D004813 ORTHO05D005889 3.2e-84 317.0 526 48.5
CiPaw.11G024600 Carya illinoinensis HOM05D004813 ORTHO05D005889 5.4e-84 316.2 525 47.2
Dinv20637 Davidia involucrata HOM05D004813 ORTHO05D005889 3.5e-83 313.5 532 46.6
MBI16_g37492_MAGBIO Magnolia biondii HOM05D004813 ORTHO05D005889 3.5e-83 313.5 557 49.7
Peaxi162Scf00089g01844 Petunia axillaris HOM05D004813 ORTHO05D005889 4.6e-83 313.2 536 45.9
AagrBONN_evm.TU.Sc2ySwM_369.357 Anthoceros agrestis HOM05D004813 ORTHO05D005889 6.0e-83 312.8 609 38.3
Nitab4.5_0000514g0060 Nicotiana tabacum HOM05D004813 ORTHO05D005889 6.0e-83 312.8 547 46.1
VMungo1215G0389 Vigna mungo HOM05D004813 ORTHO05D005889 1.3e-82 311.6 526 47.0
MELO3C026213.2 Cucumis melo HOM05D004813 ORTHO05D005889 1.8e-82 311.2 535 48.0
Gohir.D12G275800 Gossypium hirsutum HOM05D004813 ORTHO05D005889 1.8e-82 311.2 558 45.5
ATR1091G095 Amborella trichopoda HOM05D004813 ORTHO05D005889 3.9e-82 310.1 560 41.1
Potri.012G082600 Populus trichocarpa HOM05D004813 ORTHO05D005889 3.9e-82 310.1 558 42.8
Cfa019150 Carpinus fangiana HOM05D004813 ORTHO05D005889 2.5e-81 307.4 563 38.4
Thecc.03G014500 Theobroma cacao HOM05D004813 ORTHO05D005889 4.3e-81 306.6 535 47.1
vmacro16622 Vaccinium macrocarpon HOM05D004813 ORTHO05D005889 9.6e-81 305.4 579 43.9
BcaNung05723 Brassica carinata HOM05D004813 ORTHO05D005889 1.6e-80 304.7 563 48.5
BolC9t54072H Brassica oleracea HOM05D004813 ORTHO05D005889 1.6e-80 304.7 531 47.6
CARHR281210 Cardamine hirsuta HOM05D004813 ORTHO05D005889 1.6e-80 304.7 549 44.3
Gorai.008G296300 Gossypium raimondii HOM05D004813 ORTHO05D005889 1.6e-80 304.7 534 46.1
Sabra15G0103000 Salix brachista HOM05D004813 ORTHO05D005889 2.1e-80 304.3 521 46.3
A09p09960 Brassica napus HOM05D004813 ORTHO05D005889 2.8e-80 303.9 533 49.2
unitig_0.g15 Utricularia gibba HOM05D004813 ORTHO05D005889 2.8e-80 303.9 523 43.8
BcaC04g23133 Brassica carinata HOM05D004813 ORTHO05D005889 3.7e-80 303.5 535 47.5
C09p11820 Brassica napus HOM05D004813 ORTHO05D005889 3.7e-80 303.5 535 47.5
CDE05G0644 Ceratophyllum demersum HOM05D004813 ORTHO05D005889 4.8e-80 303.1 552 47.3
Glyma.05G038800 Glycine max HOM05D004813 ORTHO05D005889 6.2e-80 302.8 555 47.0
Sed0018710 Sechium edule HOM05D004813 ORTHO05D005889 6.2e-80 302.8 543 48.1
PSO063G0570 Papaver somniferum HOM05D004813 ORTHO05D005889 1.1e-79 302.0 558 43.9
TAR629G2765 Trochodendron aralioides HOM05D004813 ORTHO05D005889 1.8e-79 301.2 525 46.1
COL.COLO4_30069 Corchorus olitorius HOM05D004813 ORTHO05D005889 3.1e-79 300.4 554 44.8
Eucgr.K02829 Eucalyptus grandis HOM05D004813 ORTHO05D005889 3.1e-79 300.4 571 46.6
arahy.Tifrunner.gnm1.ann1.J26J1M Arachis hypogaea HOM05D004813 ORTHO05D005889 4.0e-79 300.1 537 47.1
BraA09t36642Z Brassica rapa HOM05D004813 ORTHO05D005889 4.0e-79 300.1 531 49.0
Ciclev10019513m.g Citrus clementina HOM05D004813 ORTHO05D005889 9.0e-79 298.9 555 44.0
Manes.14G064300 Manihot esculenta HOM05D004813 ORTHO05D005889 2.0e-78 297.7 562 41.5
A07p17440 Brassica napus HOM05D004813 ORTHO05D005889 2.6e-78 297.4 549 46.3
Carub.0002s0981 Capsella rubella HOM05D004813 ORTHO05D005889 4.5e-78 296.6 523 46.5
PSO832G2178 Papaver somniferum HOM05D004813 ORTHO05D005889 4.5e-78 296.6 560 45.2
Gohir.A12G275100 Gossypium hirsutum HOM05D004813 ORTHO05D005889 7.6e-78 295.8 542 45.9
PGR044G0958 Punica granatum HOM05D004813 ORTHO05D005889 7.6e-78 295.8 535 50.1
Lsat_1_v5_gn_4_75841 Lactuca sativa HOM05D004813 ORTHO05D005889 2.2e-77 294.3 568 45.4
Sp2g30180 Schrenkiella parvula HOM05D004813 ORTHO05D005889 2.9e-77 293.9 526 45.8
BcaB02g10019 Brassica carinata HOM05D004813 ORTHO05D005889 3.8e-77 293.5 563 46.2
MD14G1178200 Malus domestica HOM05D004813 ORTHO05D005889 3.8e-77 293.5 524 50.2
AT5G66540 Arabidopsis thaliana HOM05D004813 ORTHO05D005889 6.4e-77 292.7 530 48.9
Atru.chr8.1447 Acer truncatum HOM05D004813 ORTHO05D005889 8.4e-77 292.4 556 48.6
Potri.015G078500 Populus trichocarpa HOM05D004813 ORTHO05D005889 8.4e-77 292.4 543 48.8
DCAR_031351 Daucus carota HOM05D004813 ORTHO05D005889 1.4e-76 291.6 526 45.2
Oeu016404.1 Olea europaea HOM05D004813 ORTHO05D005889 1.9e-76 291.2 533 44.7
Thhalv10003981m.g Eutrema salsugineum HOM05D004813 ORTHO05D005889 3.2e-76 290.4 527 45.4
Lalb_Chr07g0182801 Lupinus albus HOM05D004813 ORTHO05D005889 7.1e-76 289.3 524 47.1
arahy.Tifrunner.gnm1.ann1.9LWV25 Arachis hypogaea HOM05D004813 ORTHO05D005889 9.3e-76 288.9 540 46.5
Hund02755 Selenicereus undatus HOM05D004813 ORTHO05D005889 9.3e-76 288.9 565 43.0
Zm00001eb293550 Zea mays HOM05D004813 ORTHO05D005889 9.3e-76 288.9 527 43.3
QL10p010983 Quercus lobata HOM05D004813 ORTHO05D005889 1.2e-75 288.5 550 46.0
GSVIVG01007723001 Vitis vinifera HOM05D004813 ORTHO05D005889 2.1e-75 287.7 510 38.6
Carub.0008s2799 Capsella rubella HOM05D004813 ORTHO05D005889 3.5e-75 287.0 554 45.1
Migut.D01957 Erythranthe guttata HOM05D004813 ORTHO05D005889 3.5e-75 287.0 575 43.3
Glyma.17G088200 Glycine max HOM05D004813 ORTHO05D005889 6.0e-75 286.2 549 47.0
Sc04g0001740 Simmondsia chinensis HOM05D004813 ORTHO05D005889 6.0e-75 286.2 561 45.8
CANSAT80G1068 Cannabis sativa HOM05D004813 ORTHO05D005889 1.0e-74 285.4 533 47.5
SMO275G0031 Selaginella moellendorffii HOM05D004813 ORTHO05D005889 1.3e-74 285.0 539 41.7
Haze_07517 Corylus avellana HOM05D004813 ORTHO05D005889 3.9e-74 283.5 592 44.3
Ca_21934_v3 Cicer arietinum L. HOM05D004813 ORTHO05D005889 5.1e-74 283.1 526 46.2
AUR62013092 Chenopodium quinoa HOM05D004813 ORTHO05D005889 8.7e-74 282.3 495 40.0
Psat4g058360 Pisum sativum HOM05D004813 ORTHO05D005889 8.7e-74 282.3 522 39.7
Rhsim12G0165800 Rhododendron simsii HOM05D004813 ORTHO05D005889 8.7e-74 282.3 547 37.3
Prupe.5G171700 Prunus persica HOM05D004813 ORTHO05D005889 1.9e-73 281.2 555 48.5
FAN18G0441 Fragaria x ananassa HOM05D004813 ORTHO05D005889 2.5e-73 280.8 538 45.0
RcHm_v2.0_Chr7g0193361 Rosa chinensis HOM05D004813 ORTHO05D005889 3.3e-73 280.4 526 48.7
TWI23G0210 Tripterygium wilfordii HOM05D004813 ORTHO05D005889 3.3e-73 280.4 563 44.2
FvH4_5g05471 Fragaria vesca HOM05D004813 ORTHO05D005889 5.7e-73 279.6 535 46.0
FAN18G4177 Fragaria x ananassa HOM05D004813 ORTHO05D005889 5.7e-73 279.6 536 44.2
TWI14G0980 Tripterygium wilfordii HOM05D004813 ORTHO05D005889 5.7e-73 279.6 549 45.7
Sopen03g031900 Solanum pennellii HOM05D004813 ORTHO05D005889 7.4e-73 279.3 532 45.5
Lj4g0001275 Lotus japonicus HOM05D004813 ORTHO05D005889 9.6e-73 278.9 544 46.0
Solyc03g112820.4 Solanum lycopersicum HOM05D004813 ORTHO05D005889 9.6e-73 278.9 542 46.1
PGSC0003DMG400018096 Solanum tuberosum HOM05D004813 ORTHO05D005889 1.3e-72 278.5 526 46.4
ClCG06G017810 Citrullus lanatus HOM05D004813 ORTHO05D005889 2.8e-72 277.3 614 40.1
FAN13G1879 Fragaria x ananassa HOM05D004813 ORTHO05D005889 4.8e-72 276.6 525 45.5
Os11g0137100 Oryza sativa ssp. japonica HOM05D004813 ORTHO05D005889 4.8e-72 276.6 543 42.7
Os12g0133900 Oryza sativa ssp. japonica HOM05D004813 ORTHO05D005889 6.2e-72 276.2 555 45.2
AL8G44980 Arabidopsis lyrata HOM05D004813 ORTHO05D005889 3.1e-71 273.9 558 46.2
MD06G1172400 Malus domestica HOM05D004813 ORTHO05D005889 3.1e-71 273.9 531 49.0
Aqoxy3G02883 Aquilegia oxysepala HOM05D004813 ORTHO05D005889 2.0e-70 271.2 527 49.0
FAN08G2504 Fragaria x ananassa HOM05D004813 ORTHO05D005889 2.6e-70 270.8 526 45.2
Atru.chr9.2495 Acer truncatum HOM05D004813 ORTHO05D005889 4.5e-70 270.0 559 44.9
FAN04G1884 Fragaria x ananassa HOM05D004813 ORTHO05D005889 1.0e-69 268.9 527 43.6
ECA232G2493 Erigeron canadensis HOM05D004813 ORTHO05D005889 2.2e-69 267.7 529 41.0
Lj9A420T39 Lonicera japonica HOM05D004813 ORTHO05D005889 4.9e-69 266.5 543 41.6
SGA_v2.0_scaffold114G31819 Striga asiatica HOM05D004813 ORTHO05D005889 4.9e-69 266.5 590 46.8
Aa31LG1G15060 Aethionema arabicum HOM05D004813 ORTHO05D005889 6.5e-69 266.2 529 44.8
SMO367G0656 Selaginella moellendorffii HOM05D004813 ORTHO05D005889 2.5e-68 264.2 495 43.0
HanXRQChr15g0463041 Helianthus annuus HOM05D004813 ORTHO05D005889 5.5e-68 263.1 576 43.1
Medtr4g105590 Medicago truncatula HOM05D004813 ORTHO05D005889 7.1e-68 262.7 530 46.2
AUR62010096 Chenopodium quinoa HOM05D004813 ORTHO05D005889 4.6e-67 260.0 225 62.2
SalBow6G0518 Salvia bowleyana HOM05D004813 ORTHO05D005889 6.1e-67 259.6 561 43.3
EL10Ac9g21440 Beta vulgaris HOM05D004813 ORTHO05D005889 1.9e-65 254.6 540 47.0
TPR.G37503 Trifolium pratense HOM05D004813 ORTHO05D005889 9.7e-65 252.3 539 47.3
BraA07t29465Z Brassica rapa HOM05D004813 ORTHO05D005889 2.6e-62 244.2 485 44.1
Haze_17000 Corylus avellana HOM05D004813 ORTHO05D005889 2.2e-61 241.1 564 37.6
HPP92_018752 Vanilla planifolia HOM05D004813 ORTHO05D005889 1.1e-60 238.8 522 40.8
Nitab4.5_0008678g0020 Nicotiana tabacum HOM05D004813 ORTHO05D005889 1.2e-59 235.3 240 55.8
CBR_g26354 Chara braunii HOM05D004813 ORTHO05D005889 2.8e-56 224.2 292 49.7
MD01G1006000 Malus domestica HOM05D004813 ORTHO05D005889 1.1e-55 222.2 189 61.9
Ah.01g009190 Amaranthus hybridus HOM05D004813 ORTHO05D005889 2.0e-49 201.4 564 42.2
Oeu020911.1 Olea europaea HOM05D004813 ORTHO05D005889 2.2e-45 188.0 243 46.9
Cre08.g370601 Chlamydomonas reinhardtii HOM05D004813 ORTHO05D005889 6.1e-43 179.9 251 43.0
Psat4g058280 Pisum sativum HOM05D004813 ORTHO05D005889 2.0e-41 174.9 526 31.2
arahy.Tifrunner.gnm1.ann1.J34B41 Arachis hypogaea HOM05D004813 ORTHO05D005889 2.8e-40 171.0 211 49.8
PRCOL_00002680 Prasinoderma coloniale HOM05D004813 ORTHO05D005889 3.7e-40 170.6 234 44.0
CAN.G1166.5 Capsicum annuum HOM05D004813 ORTHO05D005889 3.8e-37 160.6 143 58.0
Actinidia19105 Actinidia chinensis HOM05D004813 ORTHO05D005889 1.1e-36 159.1 380 38.2
Actinidia19106 Actinidia chinensis HOM05D004813 ORTHO05D005889 4.7e-35 153.7 121 65.3
PGR044G0267 Punica granatum HOM05D004813 ORTHO05D005889 6.1e-35 153.3 147 58.5
BolC7t43059H Brassica oleracea HOM05D004813 ORTHO05D005889 1.3e-32 145.6 222 41.4
SEGI_37748 Sequoiadendron giganteum HOM05D004813 ORTHO05D005889 4.8e-32 143.7 381 43.3
C07p25370 Brassica napus HOM05D004813 ORTHO05D005889 8.5e-29 132.9 217 41.9
SEGI_16864 Sequoiadendron giganteum HOM05D004813 ORTHO05D005889 3.2e-28 131.0 169 50.3
BcaC06g34713 Brassica carinata HOM05D004813 ORTHO05D005889 4.7e-27 127.1 191 40.8
BcaNung06644 Brassica carinata HOM05D004813 ORTHO05D005889 4.7e-27 127.1 191 40.8
CAN.G1166.4 Capsicum annuum HOM05D004813 ORTHO05D005889 6.1e-27 126.7 366 36.6
MCO01G452 Micromonas commoda HOM05D004813 ORTHO05D005889 4.9e-16 90.5 315 26.7
MBI14_g23619_MAGBIO Magnolia biondii HOM05D004813 ORTHO05D005889 1.4e-15 89.0 62 71.0
MBI07_g10351_MAGBIO Magnolia biondii HOM05D004813 ORTHO05D005889 1.6e-11 75.5 108 45.4
MBI05_g41028_MAGBIO Magnolia biondii HOM05D000669 ORTHO05D005889 1.4e-10 72.4 73 53.4
SEGI_40991 Sequoiadendron giganteum HOM05D004813 ORTHO05D005889 2.3e-10 71.6 67 58.2
Lj3g0016907 Lotus japonicus HOM05D004813 ORTHO05D005889 2.6e-09 68.2 125 38.4
Haze_20617 Corylus avellana HOM05D004813 ORTHO05D005889 5.8e-09 67.0 57 63.2
BcaB02g10018 Brassica carinata HOM05D004813 ORTHO05D005889 8.3e-08 63.2 95 38.9
Mapoly0050s0001 Marchantia polymorpha HOM05D004813 ORTHO05D005889 1.1e-07 62.8 67 53.7
Lj6g0012951 Lotus japonicus HOM05D004813 ORTHO05D005889 1.2e-06 59.3 66 48.5
HanXRQChr11g0336351 Helianthus annuus HOM05D004813 ORTHO05D005889 2.0e-06 58.5 73 45.2
SalBow1G5081 Salvia bowleyana HOM05D004813 ORTHO05D018488 6.0e-06 57.0 44 68.2


User provided reference genes

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