Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c4_27720 Physcomitrium patens HOM05D004412 ORTHO05D005316 2.3e-159 565.5 279 100.0
Pp3c26_15150 Physcomitrium patens HOM05D004412 ORTHO05D005316 6.6e-114 414.5 272 73.9
HPP92_013717 Vanilla planifolia HOM05D004412 ORTHO05D005316 5.5e-84 315.1 258 57.8
Zm00001eb142350 Zea mays HOM05D004412 ORTHO05D005316 2.7e-83 312.8 257 57.2
TAR362G0097 Trochodendron aralioides HOM05D004412 ORTHO05D005316 2.3e-82 309.7 231 62.3
Cfa005939 Carpinus fangiana HOM05D004412 ORTHO05D005316 1.1e-81 307.4 231 62.3
THA.LOC104825974 Tarenaya hassleriana HOM05D004412 ORTHO05D005316 1.1e-81 307.4 231 60.2
Os05g0367400 Oryza sativa ssp. japonica HOM05D004412 ORTHO05D005316 1.5e-81 307.0 237 60.8
Haze_04907 Corylus avellana HOM05D004412 ORTHO05D005316 1.9e-81 306.6 231 62.3
Thecc.01G297900 Theobroma cacao HOM05D004412 ORTHO05D005316 1.9e-81 306.6 231 63.2
Eucgr.H01156 Eucalyptus grandis HOM05D004412 ORTHO05D005316 4.3e-81 305.4 264 54.9
vmacro02463 Vaccinium macrocarpon HOM05D004412 ORTHO05D005316 9.7e-81 304.3 236 62.3
Duzib211G0511 Durio zibethinus HOM05D004412 ORTHO05D005316 1.6e-80 303.5 231 62.8
Hma1.2p1_0491F.1_g164430 Hydrangea macrophylla HOM05D004412 ORTHO05D005316 1.6e-80 303.5 231 61.9
ATR0693G457 Amborella trichopoda HOM05D004412 ORTHO05D005316 2.8e-80 302.8 236 60.2
TAR633G0484 Trochodendron aralioides HOM05D004412 ORTHO05D005316 2.8e-80 302.8 231 61.5
CDE05G1992 Ceratophyllum demersum HOM05D004412 ORTHO05D005316 3.7e-80 302.4 233 59.7
Ciclev10021279m.g Citrus clementina HOM05D004412 ORTHO05D005316 4.8e-80 302.0 243 57.6
Glyma.03G213500 Glycine max HOM05D004412 ORTHO05D005316 4.8e-80 302.0 231 60.6
PGR119G0650 Punica granatum HOM05D004412 ORTHO05D005316 4.8e-80 302.0 235 59.1
Rhsim13G0011700 Rhododendron simsii HOM05D004412 ORTHO05D005316 4.8e-80 302.0 241 61.0
Potri.002G205800 Populus trichocarpa HOM05D004412 ORTHO05D005316 6.3e-80 301.6 236 58.1
TWI14G0137 Tripterygium wilfordii HOM05D004412 ORTHO05D005316 8.2e-80 301.2 231 60.2
CDE11G0241 Ceratophyllum demersum HOM05D004412 ORTHO05D005316 1.1e-79 300.8 232 60.3
Duzib138G0322 Durio zibethinus HOM05D004412 ORTHO05D005316 1.1e-79 300.8 231 61.5
Gohir.A08G042700 Gossypium hirsutum HOM05D004412 ORTHO05D005316 1.1e-79 300.8 231 61.5
Carub.0001s0201 Capsella rubella HOM05D004412 ORTHO05D005316 1.8e-79 300.1 257 54.1
Potri.014G130900 Populus trichocarpa HOM05D004412 ORTHO05D005316 1.8e-79 300.1 236 57.2
TPR.G9643 Trifolium pratense HOM05D004412 ORTHO05D005316 1.8e-79 300.1 261 53.6
AT1G02880 Arabidopsis thaliana HOM05D004412 ORTHO05D005316 2.4e-79 299.7 231 60.2
AT2G44750 Arabidopsis thaliana HOM05D004412 ORTHO05D005316 3.1e-79 299.3 231 58.9
GSVIVG01027984001 Vitis vinifera HOM05D004412 ORTHO05D005316 3.1e-79 299.3 237 59.9
Lj1g0006783 Lotus japonicus HOM05D004412 ORTHO05D005316 4.1e-79 298.9 231 59.3
Lj2C1191G7 Lonicera japonica HOM05D004412 ORTHO05D005316 5.3e-79 298.5 255 58.0
Gorai.004G052600 Gossypium raimondii HOM05D004412 ORTHO05D005316 6.9e-79 298.1 231 61.5
AagrBONN_evm.TU.Sc2ySwM_362.2756 Anthoceros agrestis HOM05D004412 ORTHO05D005316 9.1e-79 297.7 263 55.9
CANSAT25G2200 Cannabis sativa HOM05D004412 ORTHO05D005316 9.1e-79 297.7 231 59.7
CANSAT25G3274 Cannabis sativa HOM05D004412 ORTHO05D005316 9.1e-79 297.7 231 59.7
COL.COLO4_23368 Corchorus olitorius HOM05D004412 ORTHO05D005316 9.1e-79 297.7 231 60.6
Manes.05G063600 Manihot esculenta HOM05D004412 ORTHO05D005316 9.1e-79 297.7 238 58.0
arahy.Tifrunner.gnm1.ann1.TC9I43 Arachis hypogaea HOM05D004412 ORTHO05D005316 1.2e-78 297.4 231 58.9
arahy.Tifrunner.gnm1.ann1.V4DRNI Arachis hypogaea HOM05D004412 ORTHO05D005316 1.2e-78 297.4 231 58.9
Dinv19708 Davidia involucrata HOM05D004412 ORTHO05D005316 1.2e-78 297.4 231 61.9
FvH4_2g25500 Fragaria vesca HOM05D004412 ORTHO05D005316 1.2e-78 297.4 231 60.2
Carub.0007s3652 Capsella rubella HOM05D004412 ORTHO05D005316 2.0e-78 296.6 252 54.4
Aa31LG1G9690 Aethionema arabicum HOM05D004412 ORTHO05D005316 2.6e-78 296.2 237 58.2
AL1G12300 Arabidopsis lyrata HOM05D004412 ORTHO05D005316 2.6e-78 296.2 231 59.3
Gohir.D08G052500 Gossypium hirsutum HOM05D004412 ORTHO05D005316 2.6e-78 296.2 231 60.6
Atru.chr5.1172 Acer truncatum HOM05D004412 ORTHO05D005316 3.4e-78 295.8 231 60.2
BcaB03g13500 Brassica carinata HOM05D004412 ORTHO05D005316 3.4e-78 295.8 231 60.2
Gohir.D12G135400 Gossypium hirsutum HOM05D004412 ORTHO05D005316 4.5e-78 295.4 231 59.7
Medtr7g108680 Medicago truncatula HOM05D004412 ORTHO05D005316 5.9e-78 295.0 255 54.9
DCAR_002821 Daucus carota HOM05D004412 ORTHO05D005316 7.7e-78 294.7 230 60.4
RcHm_v2.0_Chr6g0293711 Rosa chinensis HOM05D004412 ORTHO05D005316 7.7e-78 294.7 231 59.3
BraA10t42430Z Brassica rapa HOM05D000147 ORTHO05D001254 1.3e-77 293.9 261 52.9
Gorai.008G146400 Gossypium raimondii HOM05D004412 ORTHO05D005316 1.3e-77 293.9 231 59.7
Prupe.8G259100 Prunus persica HOM05D004412 ORTHO05D005316 1.3e-77 293.9 239 59.0
TWI59G0713 Tripterygium wilfordii HOM05D004412 ORTHO05D005316 1.3e-77 293.9 231 59.3
Phvul.001G206100 Phaseolus vulgaris HOM05D004412 ORTHO05D005316 1.7e-77 293.5 231 58.0
QL12p027258 Quercus lobata HOM05D004412 ORTHO05D005316 1.7e-77 293.5 231 60.2
FAN24G2667 Fragaria x ananassa HOM05D004412 ORTHO05D005316 2.2e-77 293.1 232 59.9
A10p01550 Brassica napus HOM05D000147 ORTHO05D001254 2.9e-77 292.7 261 52.5
Psat0s3188g0040 Pisum sativum HOM05D004412 ORTHO05D005316 2.9e-77 292.7 231 59.3
arahy.Tifrunner.gnm1.ann1.E95WBF Arachis hypogaea HOM05D004412 ORTHO05D005316 3.8e-77 292.4 232 59.9
DCAR_005799 Daucus carota HOM05D004412 ORTHO05D005316 3.8e-77 292.4 231 60.2
arahy.Tifrunner.gnm1.ann1.K6REY5 Arachis hypogaea HOM05D004412 ORTHO05D005316 5.0e-77 292.0 232 59.9
Lalb_Chr18g0047081 Lupinus albus HOM05D004412 ORTHO05D005316 5.0e-77 292.0 252 56.3
Ca_09149_v3 Cicer arietinum L. HOM05D004412 ORTHO05D005316 6.5e-77 291.6 231 58.0
BcaC05g24629 Brassica carinata HOM05D004412 ORTHO05D005316 8.5e-77 291.2 231 58.4
C05p01550 Brassica napus HOM05D000147 ORTHO05D001254 8.5e-77 291.2 231 58.4
Oeu032104.1 Olea europaea HOM05D004412 ORTHO05D005316 8.5e-77 291.2 261 57.1
Cc04_g10720 Coffea canephora HOM05D004412 ORTHO05D005316 1.1e-76 290.8 260 54.6
BcaB03g15756 Brassica carinata HOM05D004412 ORTHO05D005316 1.4e-76 290.4 240 55.8
Zm00001eb285500 Zea mays HOM05D004412 ORTHO05D005316 1.4e-76 290.4 244 57.8
Thhalv10008492m.g Eutrema salsugineum HOM05D004412 ORTHO05D005316 1.9e-76 290.0 231 58.0
Hund18137 Selenicereus undatus HOM05D004412 ORTHO05D005316 2.5e-76 289.7 238 57.6
PSO782G2310 Papaver somniferum HOM05D004412 ORTHO05D005316 3.2e-76 289.3 231 56.7
Glyma.19G210300 Glycine max HOM05D004412 ORTHO05D005316 4.2e-76 288.9 246 56.1
MD03G1285900 Malus domestica HOM05D004412 ORTHO05D005316 4.2e-76 288.9 236 59.7
Sp1g01880 Schrenkiella parvula HOM05D004412 ORTHO05D005316 4.2e-76 288.9 231 58.4
MSTRG.18165 Avicennia marina HOM05D004412 ORTHO05D005316 7.2e-76 288.1 242 59.1
ECA247G0114 Erigeron canadensis HOM05D004412 ORTHO05D005316 1.2e-75 287.3 260 54.2
BolC5t28933H Brassica oleracea HOM05D004412 ORTHO05D005316 2.1e-75 286.6 234 58.1
PSO302G0109 Papaver somniferum HOM05D004412 ORTHO05D005316 2.7e-75 286.2 231 56.7
BcaC07g36986 Brassica carinata HOM05D004412 ORTHO05D005316 3.6e-75 285.8 231 56.7
BcaC07g36988 Brassica carinata HOM05D004412 ORTHO05D005316 3.6e-75 285.8 231 56.7
Migut.D00201 Erythranthe guttata HOM05D004412 ORTHO05D005316 3.6e-75 285.8 235 59.6
C08p00300 Brassica napus HOM05D004412 ORTHO05D005316 4.6e-75 285.4 231 56.7
PSO210G7114 Papaver somniferum HOM05D004412 ORTHO05D005316 6.1e-75 285.0 231 56.7
MD11G1305700 Malus domestica HOM05D004412 ORTHO05D005316 7.9e-75 284.6 236 58.9
A08p37550 Brassica napus HOM05D004412 ORTHO05D005316 1.4e-74 283.9 231 56.3
Sc05g0004150 Simmondsia chinensis HOM05D004412 ORTHO05D005316 1.4e-74 283.9 231 55.4
CAN.G339.23 Capsicum annuum HOM05D004412 ORTHO05D005316 3.0e-74 282.7 231 57.6
BolC8t46831H Brassica oleracea HOM05D004412 ORTHO05D005316 2.0e-73 280.0 234 56.0
AUR62033109 Chenopodium quinoa HOM05D000147 ORTHO05D001254 2.0e-73 280.0 231 57.6
Lsat_1_v5_gn_9_901 Lactuca sativa HOM05D004412 ORTHO05D005316 2.0e-73 280.0 232 56.5
AUR62008659 Chenopodium quinoa HOM05D004412 ORTHO05D005316 2.6e-73 279.6 231 57.6
PGSC0003DMG401011372 Solanum tuberosum HOM05D004412 ORTHO05D005316 3.3e-73 279.3 234 56.4
Sabra14G0097400 Salix brachista HOM05D004412 ORTHO05D005316 7.4e-73 278.1 267 51.7
EL10Ac2g03462 Beta vulgaris HOM05D004412 ORTHO05D005316 9.7e-73 277.7 242 55.8
HanXRQChr15g0465781 Helianthus annuus HOM05D004412 ORTHO05D005316 1.3e-72 277.3 232 56.9
CSS0010827 Camellia sinensis var. sinensis HOM05D004412 ORTHO05D005316 1.7e-72 276.9 237 58.6
Sopen09g029800 Solanum pennellii HOM05D004412 ORTHO05D005316 2.8e-72 276.2 233 55.8
MBI19_g12143_MAGBIO Magnolia biondii HOM05D004412 ORTHO05D005316 3.7e-72 275.8 291 48.1
HanXRQChr10g0284561 Helianthus annuus HOM05D004412 ORTHO05D005316 4.8e-72 275.4 233 55.8
PSO832G3509 Papaver somniferum HOM05D004412 ORTHO05D005316 6.3e-72 275.0 231 55.4
Os01g0356500 Oryza sativa ssp. japonica HOM05D004412 ORTHO05D005316 5.3e-71 271.9 231 55.8
CsaV3_7G029140 Cucumis sativus L. HOM05D004412 ORTHO05D005316 6.9e-71 271.6 231 57.1
Peaxi162Scf00001g04911 Petunia axillaris HOM05D004412 ORTHO05D005316 9.1e-71 271.2 238 55.0
Solyc09g074970.3 Solanum lycopersicum HOM05D004412 ORTHO05D005316 4.5e-70 268.9 235 54.9
Aqoxy5G00729 Aquilegia oxysepala HOM05D004412 ORTHO05D005316 5.9e-70 268.5 212 59.9
Nn4g25831 Nelumbo nucifera HOM05D004412 ORTHO05D005316 1.3e-69 267.3 212 57.5
Manes.01G217400 Manihot esculenta HOM05D004412 ORTHO05D005316 3.8e-69 265.8 216 58.3
Hund05414 Selenicereus undatus HOM05D004412 ORTHO05D005316 4.2e-68 262.3 212 56.6
SGA_v2.0_scaffold1G00376 Striga asiatica HOM05D004412 ORTHO05D005316 4.2e-68 262.3 229 56.3
Mapoly0113s0040 Marchantia polymorpha HOM05D004412 ORTHO05D005316 5.5e-68 261.9 261 51.7
Zm00001eb131550 Zea mays HOM05D004412 ORTHO05D005316 1.2e-67 260.8 246 52.0
SalBow3G3296 Salvia bowleyana HOM05D002199 ORTHO05D007829 3.6e-67 259.2 212 59.0
QL12p026683 Quercus lobata HOM05D004412 ORTHO05D005316 1.4e-66 257.3 211 58.8
SGA_v2.0_scaffold2G01402 Striga asiatica HOM05D002199 ORTHO05D007829 5.2e-66 255.4 229 55.9
ClCG09G005980 Citrullus lanatus HOM05D004412 ORTHO05D005316 1.5e-65 253.8 212 57.1
BraA08t35652Z Brassica rapa HOM05D004412 ORTHO05D005316 8.2e-64 248.1 235 51.9
Duzib211G0323 Durio zibethinus HOM05D004412 ORTHO05D005316 5.9e-62 241.9 195 60.0
CARHR002230 Cardamine hirsuta HOM05D004412 ORTHO05D005316 2.9e-61 239.6 235 49.4
CiPaw.07G106900 Carya illinoinensis HOM05D004412 ORTHO05D005316 3.8e-61 239.2 195 59.0
Gohir.A12G131600 Gossypium hirsutum HOM05D004412 ORTHO05D005316 8.5e-61 238.0 195 57.9
Actinidia32228 Actinidia chinensis HOM05D004412 ORTHO05D005316 1.6e-59 233.8 205 55.6
Sed0017881 Sechium edule HOM05D004412 ORTHO05D005316 7.5e-57 224.9 192 55.7
Medtr8g058563 Medicago truncatula HOM05D004412 ORTHO05D005316 2.2e-56 223.4 180 58.3
SMO119G0015 Selaginella moellendorffii HOM05D004412 ORTHO05D005316 3.7e-56 222.6 238 50.0
MELO3C016014.2 Cucumis melo HOM05D004412 ORTHO05D005316 8.5e-53 211.5 192 55.2
PGR119G0381 Punica granatum HOM05D004412 ORTHO05D005316 8.0e-51 204.9 201 50.2
CBR_g34735 Chara braunii HOM05D004412 ORTHO05D000002 1.8e-50 203.8 179 54.7
Dinv33040 Davidia involucrata HOM05D004412 ORTHO05D005316 1.8e-50 203.8 170 57.1
SEGI_10498 Sequoiadendron giganteum HOM05D004412 ORTHO05D005316 2.6e-49 199.9 155 61.3
Sabra02G0153500 Salix brachista HOM05D004412 ORTHO05D005316 5.7e-49 198.7 153 58.2
SMO304G0134 Selaginella moellendorffii HOM05D004412 ORTHO05D005316 1.7e-48 197.2 180 52.2
unitig_0.g656 Utricularia gibba HOM05D004412 ORTHO05D005316 6.3e-48 195.3 155 63.2
Nitab4.5_0002469g0010 Nicotiana tabacum HOM05D004412 ORTHO05D005316 1.9e-44 183.7 240 42.1
Nitab4.5_0005515g0010 Nicotiana tabacum HOM05D004412 ORTHO05D005316 2.3e-42 176.8 338 35.2
MCO04G072 Micromonas commoda HOM05D004412 ORTHO05D005316 5.2e-42 175.6 278 34.9
Cre01.g040050 Chlamydomonas reinhardtii HOM05D004412 ORTHO05D005316 2.4e-39 166.8 301 36.2
Carub.0033s0005 Capsella rubella HOM05D004412 ORTHO05D005316 2.3e-37 160.2 132 55.3
Lj1g0003703 Lotus japonicus HOM05D004412 ORTHO05D005316 5.0e-37 159.1 109 62.4
SHI29035 Sapria himalayana HOM05D004412 ORTHO05D005316 2.8e-35 153.3 210 41.0
Nitab4.5_0001756g0180 Nicotiana tabacum HOM05D004412 ORTHO05D005316 8.9e-34 148.3 101 64.4
Nitab4.5_0000619g0170 Nicotiana tabacum HOM05D004412 ORTHO05D005316 9.2e-31 138.3 101 61.4
SMO304G0108 Selaginella moellendorffii HOM05D004412 ORTHO05D005316 1.3e-29 134.4 183 42.6
PRCOL_00001679 Prasinoderma coloniale HOM05D004412 ORTHO05D005316 2.5e-28 130.2 246 37.0
SMO304G0017 Selaginella moellendorffii HOM05D004412 ORTHO05D005316 2.6e-25 120.2 146 47.9
SEGI_14482 Sequoiadendron giganteum HOM05D004412 ORTHO05D005316 2.6e-25 120.2 100 56.0
Nitab4.5_0001756g0260 Nicotiana tabacum HOM05D004412 ORTHO05D005316 1.3e-24 117.9 104 53.8
Nitab4.5_0001756g0250 Nicotiana tabacum HOM05D004412 ORTHO05D005316 2.2e-24 117.1 81 61.7
Cc01_g20710 Coffea canephora HOM05D004412 ORTHO05D005316 8.6e-21 105.1 91 52.7
SMO304G0077 Selaginella moellendorffii HOM05D004412 ORTHO05D005316 5.8e-17 92.4 128 41.4
Os01g0931400 Oryza sativa ssp. japonica HOM05D004412 ORTHO05D005316 9.2e-15 85.1 57 66.7
MD11G1034700 Malus domestica HOM05D004412 ORTHO05D005316 2.7e-14 83.6 173 35.3
SHI29034 Sapria himalayana HOM05D000105 ORTHO05D000023 1.5e-12 77.8 50 64.0
CBR_g34733 Chara braunii HOM05D004412 ORTHO05D005316 3.3e-12 76.6 87 43.7
FAN16G1537 Fragaria x ananassa HOM05D004412 ORTHO05D005316 6.2e-11 72.4 57 56.1
BcaC05g24583 Brassica carinata HOM05D004412 ORTHO05D005316 2.2e-08 63.9 55 52.7
MD02G1044100 Malus domestica HOM05D004412 ORTHO05D005316 4.9e-08 62.8 51 58.8
MD06G1023300 Malus domestica HOM05D004412 ORTHO05D005316 4.9e-08 62.8 51 58.8
BcaB01g01260 Brassica carinata HOM05D004412 ORTHO05D093464 2.1e-06 57.4 51 54.9


User provided reference genes

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