Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c4_25410 Physcomitrium patens HOM05D004491 ORTHO05D006742 1.3e-230 802.7 410 100.0
Mapoly0023s0134 Marchantia polymorpha HOM05D004491 ORTHO05D006742 7.1e-165 584.3 410 70.7
AagrBONN_evm.TU.Sc2ySwM_228.2306 Anthoceros agrestis HOM05D004491 ORTHO05D006742 2.1e-161 572.8 409 68.0
SEGI_03905 Sequoiadendron giganteum HOM05D004491 ORTHO05D006742 5.0e-150 535.0 411 63.5
ATR0706G070 Amborella trichopoda HOM05D004491 ORTHO05D006742 8.4e-150 534.3 409 63.3
SMO011G0024 Selaginella moellendorffii HOM05D004491 ORTHO05D006742 3.0e-147 525.8 408 63.2
Hma1.2p1_0209F.1_g089210 Hydrangea macrophylla HOM05D004491 ORTHO05D006742 6.3e-145 518.1 410 61.7
SGA_v2.0_scaffold44G16642 Striga asiatica HOM05D004491 ORTHO05D006742 1.1e-144 517.3 411 61.3
vmacro09158 Vaccinium macrocarpon HOM05D004491 ORTHO05D006742 1.8e-144 516.5 412 61.2
AT2G47970 Arabidopsis thaliana HOM05D004491 ORTHO05D006742 2.4e-144 516.2 411 61.6
Aqoxy5G00601 Aquilegia oxysepala HOM05D004491 ORTHO05D006742 1.2e-143 513.8 410 61.5
Thhalv10001466m.g Eutrema salsugineum HOM05D004491 ORTHO05D006742 1.2e-143 513.8 411 60.8
Aa31LG1G29390 Aethionema arabicum HOM05D004491 ORTHO05D006742 1.5e-143 513.5 411 60.8
Peaxi162Scf01039g00225 Petunia axillaris HOM05D004491 ORTHO05D006742 2.0e-143 513.1 411 61.1
SalBow3G0026 Salvia bowleyana HOM05D004491 ORTHO05D006742 5.9e-143 511.5 410 60.7
AL4G47560 Arabidopsis lyrata HOM05D004491 ORTHO05D006742 7.7e-143 511.1 411 60.6
Migut.F00598 Erythranthe guttata HOM05D004491 ORTHO05D006742 7.7e-143 511.1 410 61.0
PGSC0003DMG400024040 Solanum tuberosum HOM05D004491 ORTHO05D006742 7.7e-143 511.1 410 61.5
DCAR_012436 Daucus carota HOM05D004491 ORTHO05D006742 1.0e-142 510.8 412 60.4
MSTRG.27268 Avicennia marina HOM05D004491 ORTHO05D006742 1.7e-142 510.0 410 60.7
CSS0018382 Camellia sinensis var. sinensis HOM05D004491 ORTHO05D006742 1.7e-142 510.0 410 61.0
BcaC02g10333 Brassica carinata HOM05D004491 ORTHO05D006742 2.2e-142 509.6 411 59.4
C04p30230 Brassica napus HOM05D004491 ORTHO05D006742 2.9e-142 509.2 411 59.4
BolC4t24555H Brassica oleracea HOM05D004491 ORTHO05D006742 2.9e-142 509.2 411 59.4
BcaB02g08082 Brassica carinata HOM05D004491 ORTHO05D006742 3.8e-142 508.8 411 59.6
A04p00390 Brassica napus HOM05D004491 ORTHO05D006742 3.8e-142 508.8 411 59.4
BraA04t15757Z Brassica rapa HOM05D004491 ORTHO05D006742 3.8e-142 508.8 411 59.4
CDE12G0180 Ceratophyllum demersum HOM05D004491 ORTHO05D006742 3.8e-142 508.8 410 61.2
QL12p023667 Quercus lobata HOM05D004491 ORTHO05D006742 3.8e-142 508.8 409 61.9
Nitab4.5_0003831g0010 Nicotiana tabacum HOM05D004491 ORTHO05D006742 5.0e-142 508.4 412 61.2
Rhsim13G0018200 Rhododendron simsii HOM05D004491 ORTHO05D006742 5.0e-142 508.4 413 61.5
Actinidia24287 Actinidia chinensis HOM05D004491 ORTHO05D006742 6.5e-142 508.1 410 60.7
RcHm_v2.0_Chr6g0292401 Rosa chinensis HOM05D004491 ORTHO05D006742 1.1e-141 507.3 410 60.0
Cc01_g20110 Coffea canephora HOM05D004491 ORTHO05D006742 1.4e-141 506.9 411 60.6
Sopen06g035830 Solanum pennellii HOM05D004491 ORTHO05D006742 1.4e-141 506.9 410 60.7
unitig_37.g12470 Utricularia gibba HOM05D004491 ORTHO05D006742 1.9e-141 506.5 411 60.6
Solyc06g084440.3 Solanum lycopersicum HOM05D004491 ORTHO05D006742 2.5e-141 506.1 410 60.7
Carub.0005s2965 Capsella rubella HOM05D004491 ORTHO05D006742 3.2e-141 505.8 410 59.8
CDE01G0135 Ceratophyllum demersum HOM05D004491 ORTHO05D006742 3.2e-141 505.8 410 61.5
MELO3C005918.2 Cucumis melo HOM05D004491 ORTHO05D006742 4.2e-141 505.4 410 59.3
Potri.014G135590 Populus trichocarpa HOM05D004491 ORTHO05D006742 4.2e-141 505.4 410 59.5
Sp4g29890 Schrenkiella parvula HOM05D004491 ORTHO05D006742 4.2e-141 505.4 411 60.1
AT3G63000 Arabidopsis thaliana HOM05D004491 ORTHO05D006742 5.5e-141 505.0 410 59.3
arahy.Tifrunner.gnm1.ann1.16527J Arachis hypogaea HOM05D004491 ORTHO05D006742 5.5e-141 505.0 414 61.6
FAN20G1381 Fragaria x ananassa HOM05D004491 ORTHO05D006742 7.2e-141 504.6 410 59.0
Potri.002G213600 Populus trichocarpa HOM05D004491 ORTHO05D006742 7.2e-141 504.6 410 59.0
arahy.Tifrunner.gnm1.ann1.5A22SW Arachis hypogaea HOM05D004491 ORTHO05D006742 9.4e-141 504.2 414 61.4
CANSAT25G3440 Cannabis sativa HOM05D004491 ORTHO05D006742 9.4e-141 504.2 410 60.5
FvH4_2g24580 Fragaria vesca HOM05D004491 ORTHO05D006742 1.2e-140 503.8 410 59.0
Sed0005784 Sechium edule HOM05D004491 ORTHO05D006742 1.2e-140 503.8 410 59.5
Nitab4.5_0002093g0130 Nicotiana tabacum HOM05D004491 ORTHO05D006742 1.6e-140 503.4 412 60.7
FAN27G1423 Fragaria x ananassa HOM05D004491 ORTHO05D006742 2.7e-140 502.7 410 58.8
Cpa.g.sc9.150 Carica papaya HOM05D004491 ORTHO05D006742 3.6e-140 502.3 413 61.0
FAN15G2832 Fragaria x ananassa HOM05D004491 ORTHO05D006742 3.6e-140 502.3 410 58.8
Hund18024 Selenicereus undatus HOM05D004491 ORTHO05D006742 3.6e-140 502.3 416 58.9
CsaV3_5G000130 Cucumis sativus L. HOM05D004491 ORTHO05D006742 4.6e-140 501.9 410 59.0
FAN24G0196 Fragaria x ananassa HOM05D004491 ORTHO05D006742 4.6e-140 501.9 410 59.0
ClCG01G000050 Citrullus lanatus HOM05D004491 ORTHO05D006742 6.1e-140 501.5 410 58.3
AL5G45780 Arabidopsis lyrata HOM05D004491 ORTHO05D006742 1.0e-139 500.7 410 59.3
Lsat_1_v5_gn_5_189841 Lactuca sativa HOM05D004491 ORTHO05D006742 1.8e-139 500.0 410 58.8
Manes.05G069700 Manihot esculenta HOM05D004491 ORTHO05D006742 2.3e-139 499.6 410 60.7
Sabra14G0101900 Salix brachista HOM05D004491 ORTHO05D006742 2.3e-139 499.6 410 58.8
MSTRG.8371 Avicennia marina HOM05D004491 ORTHO05D006742 3.0e-139 499.2 410 59.3
Glyma.19G205200 Glycine max HOM05D004491 ORTHO05D006742 3.9e-139 498.8 412 60.0
SGA_v2.0_scaffold60G20898 Striga asiatica HOM05D004491 ORTHO05D006742 3.9e-139 498.8 443 56.4
Aa31LG10G16820 Aethionema arabicum HOM05D004491 ORTHO05D006742 5.1e-139 498.4 411 59.9
Sp5g00520 Schrenkiella parvula HOM05D004491 ORTHO05D006742 8.8e-139 497.7 411 59.1
Sed0015582 Sechium edule HOM05D004491 ORTHO05D006742 1.5e-138 496.9 410 58.0
THA.LOC104817536 Tarenaya hassleriana HOM05D004491 ORTHO05D006742 2.0e-138 496.5 412 59.7
PSO170G1317 Papaver somniferum HOM05D004491 ORTHO05D006742 2.5e-138 496.1 412 60.4
Phvul.001G201100 Phaseolus vulgaris HOM05D004491 ORTHO05D006742 3.3e-138 495.7 411 59.9
Atru.chr5.1296 Acer truncatum HOM05D004491 ORTHO05D006742 7.4e-138 494.6 410 58.8
TAR636G1438 Trochodendron aralioides HOM05D004491 ORTHO05D006742 7.4e-138 494.6 410 59.3
ECA248G1403 Erigeron canadensis HOM05D004491 ORTHO05D006742 1.3e-137 493.8 411 59.1
Lj1g0004162 Lotus japonicus HOM05D004491 ORTHO05D006742 1.3e-137 493.8 413 60.0
Cfa006054 Carpinus fangiana HOM05D004491 ORTHO05D006742 1.7e-137 493.4 410 58.8
Haze_04798 Corylus avellana HOM05D004491 ORTHO05D006742 1.7e-137 493.4 410 59.0
Lalb_Chr20g0111001 Lupinus albus HOM05D004491 ORTHO05D006742 1.7e-137 493.4 415 58.6
Sabra02G0149400 Salix brachista HOM05D004491 ORTHO05D006742 1.7e-137 493.4 410 58.3
PSO407G0423 Papaver somniferum HOM05D004491 ORTHO05D006742 2.2e-137 493.0 412 60.2
VMungo1383G0326 Vigna mungo HOM05D004491 ORTHO05D006742 2.2e-137 493.0 411 59.1
Ah.02g115120 Amaranthus hybridus HOM05D004491 ORTHO05D006742 6.3e-137 491.5 417 57.8
Prupe.8G251000 Prunus persica HOM05D004491 ORTHO05D006742 1.8e-136 490.0 411 57.4
CiPaw.07G098600 Carya illinoinensis HOM05D004491 ORTHO05D006742 4.1e-136 488.8 410 57.6
CARHR173290 Cardamine hirsuta HOM05D004491 ORTHO05D006742 5.3e-136 488.4 410 58.0
Glyma.03G207900 Glycine max HOM05D004491 ORTHO05D006742 1.2e-135 487.3 412 58.5
MD11G1296800 Malus domestica HOM05D004491 ORTHO05D006742 1.2e-135 487.3 411 57.2
PGR044G0382 Punica granatum HOM05D004491 ORTHO05D006742 2.6e-135 486.1 412 58.0
Oeu022805.1 Olea europaea HOM05D004491 ORTHO05D006742 3.4e-135 485.7 455 54.5
Ciclev10011862m.g Citrus clementina HOM05D004491 ORTHO05D006742 5.9e-135 485.0 410 58.0
MD03G1274300 Malus domestica HOM05D004491 ORTHO05D006742 5.9e-135 485.0 411 56.9
Nn3g21241 Nelumbo nucifera HOM05D004491 ORTHO05D006742 5.9e-135 485.0 411 60.3
Lalb_Chr25g0287571 Lupinus albus HOM05D004491 ORTHO05D006742 7.7e-135 484.6 414 57.5
HPP92_001332 Vanilla planifolia HOM05D004491 ORTHO05D006742 7.7e-135 484.6 415 57.1
vmacro09175 Vaccinium macrocarpon HOM05D004491 ORTHO05D006742 2.2e-134 483.0 477 52.6
Eucgr.K03426 Eucalyptus grandis HOM05D004491 ORTHO05D006742 3.8e-134 482.3 411 58.6
HanXRQChr11g0334841 Helianthus annuus HOM05D004491 ORTHO05D006742 3.8e-134 482.3 410 57.3
Medtr7g107480 Medicago truncatula HOM05D004491 ORTHO05D006742 3.8e-134 482.3 413 57.6
TWI23G1267 Tripterygium wilfordii HOM05D004491 ORTHO05D006742 1.1e-133 480.7 410 56.8
Gorai.004G139800 Gossypium raimondii HOM05D004491 ORTHO05D006742 4.2e-133 478.8 411 58.2
TWI14G1187 Tripterygium wilfordii HOM05D004491 ORTHO05D006742 5.5e-133 478.4 410 56.8
CSS0045203 Camellia sinensis var. sinensis HOM05D004491 ORTHO05D006742 1.2e-132 477.2 411 57.9
Gohir.D08G136600 Gossypium hirsutum HOM05D004491 ORTHO05D006742 1.6e-132 476.9 411 57.9
Gohir.A08G115800 Gossypium hirsutum HOM05D004491 ORTHO05D006742 6.1e-132 474.9 411 57.4
Psat3g025480 Pisum sativum HOM05D004491 ORTHO05D006742 7.9e-132 474.6 413 57.9
AUR62043003 Chenopodium quinoa HOM05D004491 ORTHO05D006742 1.8e-131 473.4 417 56.4
Ca_09104_v3 Cicer arietinum L. HOM05D004491 ORTHO05D006742 5.1e-131 471.9 413 57.1
Gohir.A12G007800 Gossypium hirsutum HOM05D004491 ORTHO05D006742 5.1e-131 471.9 411 56.7
Gorai.008G007400 Gossypium raimondii HOM05D004491 ORTHO05D006742 6.7e-131 471.5 411 56.9
Thecc.01G288700 Theobroma cacao HOM05D004491 ORTHO05D006742 8.8e-131 471.1 411 56.9
Duzib211G0578 Durio zibethinus HOM05D004491 ORTHO05D006742 2.6e-130 469.5 411 56.4
Gohir.D12G007200 Gossypium hirsutum HOM05D004491 ORTHO05D006742 5.7e-130 468.4 411 56.7
MBI19_g09851_MAGBIO Magnolia biondii HOM05D004491 ORTHO05D006742 5.7e-130 468.4 418 57.2
TAR365G0641 Trochodendron aralioides HOM05D004491 ORTHO05D006742 2.2e-129 466.5 409 55.5
Dinv32984 Davidia involucrata HOM05D004682 ORTHO05D006197 2.0e-127 459.9 406 56.7
EL10Ac5g11643 Beta vulgaris HOM05D004491 ORTHO05D006742 3.5e-127 459.1 466 51.3
Lj1C40T6 Lonicera japonica HOM05D004491 ORTHO05D006742 3.2e-125 452.6 506 47.8
SHI15482 Sapria himalayana HOM05D004491 ORTHO05D006742 2.1e-124 449.9 429 52.4
TPR.G32310 Trifolium pratense HOM05D004491 ORTHO05D006742 1.1e-120 437.6 403 55.1
COL.COLO4_08043 Corchorus olitorius HOM05D004491 ORTHO05D006742 5.3e-120 435.3 348 61.2
Os01g0377700 Oryza sativa ssp. japonica HOM05D004491 ORTHO05D006742 1.0e-115 421.0 419 53.5
Zm00001eb366640 Zea mays HOM05D004491 ORTHO05D006742 2.0e-114 416.8 418 53.1
Zm00001eb146560 Zea mays HOM05D004491 ORTHO05D006742 1.6e-111 407.1 418 51.7
CAN.G1209.44 Capsicum annuum HOM05D004491 ORTHO05D006742 8.5e-110 401.4 304 62.8
Sc05g0004670 Simmondsia chinensis HOM05D004491 ORTHO05D006742 6.8e-107 391.7 332 59.0
CSS0029376 Camellia sinensis var. sinensis HOM05D004491 ORTHO05D006742 9.1e-104 381.3 348 54.9
AUR62034024 Chenopodium quinoa HOM05D004491 ORTHO05D006742 4.2e-101 372.5 334 55.7
Duzib133G1404 Durio zibethinus HOM05D004491 ORTHO05D006742 2.1e-100 370.2 329 56.2
THA.LOC104820469 Tarenaya hassleriana HOM05D004491 ORTHO05D006742 8.9e-91 338.2 234 68.4
PRCOL_00001630 Prasinoderma coloniale HOM05D004491 ORTHO05D006742 2.3e-86 323.6 430 44.9
PSO384G1012 Papaver somniferum HOM05D004491 ORTHO05D006742 1.2e-82 311.2 241 62.2
MCO03G089 Micromonas commoda HOM05D004491 ORTHO05D006742 9.5e-77 291.6 387 43.9
Cre06.g293051 Chlamydomonas reinhardtii HOM05D000780 ORTHO05D001132 2.1e-63 247.3 326 44.5
THA.LOC104799698 Tarenaya hassleriana HOM05D004491 ORTHO05D006742 1.5e-61 241.1 178 62.9
Duzib147G1201 Durio zibethinus HOM05D004491 ORTHO05D006742 4.3e-53 213.0 244 47.5
Aa31sc35G70 Aethionema arabicum HOM05D004491 ORTHO05D006742 2.0e-42 177.6 182 51.6
GSVIVG01011019001 Vitis vinifera HOM05D004491 ORTHO05D006742 2.5e-37 160.6 113 67.3
Actinidia00704 Actinidia chinensis HOM05D004491 ORTHO05D019493 1.4e-32 144.8 239 38.5
Zm00001eb098320 Zea mays HOM05D004491 ORTHO05D006742 4.2e-32 143.3 125 56.8
BcaB02g07304 Brassica carinata HOM05D004491 ORTHO05D091651 5.7e-29 132.9 130 47.7
AUR62034023 Chenopodium quinoa HOM05D004491 ORTHO05D019493 1.4e-22 111.7 86 58.1
Sopen08g018880 Solanum pennellii HOM05D004491 ORTHO05D006742 1.1e-21 108.6 80 63.8
SEGI_06416 Sequoiadendron giganteum HOM05D004491 ORTHO05D019493 3.3e-21 107.1 84 52.4
BcaC08g45254 Brassica carinata HOM05D004491 ORTHO05D032214 2.4e-19 100.9 74 63.5
BolC6t38019H Brassica oleracea HOM05D004491 ORTHO05D032214 2.4e-19 100.9 74 63.5
C06p28510 Brassica napus HOM05D004491 ORTHO05D032214 4.5e-18 96.7 74 60.8
C08p37710 Brassica napus HOM05D004491 ORTHO05D031847 1.4e-16 91.7 90 54.4
BolC8t51354H Brassica oleracea HOM05D004491 ORTHO05D031847 1.4e-16 91.7 90 54.4
Gohir.A11G248600 Gossypium hirsutum HOM05D004491 ORTHO05D019493 2.5e-16 90.9 88 48.9
Gohir.A04G054626 Gossypium hirsutum HOM05D004491 ORTHO05D019493 4.2e-16 90.1 86 50.0
BcaC07g40782 Brassica carinata HOM05D004491 ORTHO05D031847 4.7e-15 86.7 90 54.4
HPP92_013688 Vanilla planifolia HOM05D004491 ORTHO05D006742 2.3e-14 84.3 80 51.2
BcaC07g42722 Brassica carinata HOM05D004491 ORTHO05D095981 4.4e-13 80.1 66 57.6
SHI00898 Sapria himalayana HOM05D004491 ORTHO05D019493 2.8e-12 77.4 73 47.9
Actinidia28542 Actinidia chinensis HOM05D004491 ORTHO05D057841 1.4e-11 75.1 183 34.4
BcaC07g42719 Brassica carinata HOM05D004491 ORTHO05D094938 5.3e-11 73.2 65 50.8
SHI19086 Sapria himalayana HOM05D004491 ORTHO05D019493 1.2e-10 72.0 59 57.6
CAN.G1682.2 Capsicum annuum HOM05D011687 ORTHO05D014163 8.0e-07 59.3 88 38.6
BolC6t38020H Brassica oleracea HOM05D004491 ORTHO05D040597 1.4e-06 58.5 113 35.4
C06p28520 Brassica napus HOM05D004491 ORTHO05D040597 1.8e-06 58.2 113 34.5


User provided reference genes

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