Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c4_24340 Physcomitrium patens HOM05D003573 ORTHO05D004204 9.7e-68 260.0 130 100.0
AagrBONN_evm.TU.Sc2ySwM_228.2372 Anthoceros agrestis HOM05D003573 ORTHO05D004204 1.0e-16 90.5 90 47.8
SEGI_36437 Sequoiadendron giganteum HOM05D003573 ORTHO05D004204 1.9e-15 86.3 92 42.4
Pp3c4_27310 Physcomitrium patens HOM05D003573 ORTHO05D004204 2.5e-15 85.9 79 46.8
Mapoly0126s0022 Marchantia polymorpha HOM05D003573 ORTHO05D004204 5.6e-15 84.7 66 51.5
Duzib133G0299 Durio zibethinus HOM05D003573 ORTHO05D004204 3.6e-14 82.0 99 40.4
Pp3c26_11230 Physcomitrium patens HOM05D003573 ORTHO05D004204 3.6e-14 82.0 63 50.8
SMO117G0341 Selaginella moellendorffii HOM05D003573 ORTHO05D004204 3.6e-14 82.0 68 47.1
Os01g0331900 Oryza sativa ssp. japonica HOM05D003573 ORTHO05D004204 4.8e-14 81.6 73 45.2
Hund07300 Selenicereus undatus HOM05D003573 ORTHO05D004204 4.8e-14 81.6 68 47.1
Zm00001eb353840 Zea mays HOM05D003573 ORTHO05D004204 6.2e-14 81.3 97 40.2
AUR62006775 Chenopodium quinoa HOM05D003573 ORTHO05D004204 8.1e-14 80.9 68 45.6
Aa31LG1G28500 Aethionema arabicum HOM05D003573 ORTHO05D004204 1.1e-13 80.5 83 37.3
Os05g0159100 Oryza sativa ssp. japonica HOM05D003573 ORTHO05D004204 1.1e-13 80.5 101 38.6
CiPaw.07G031700 Carya illinoinensis HOM05D003573 ORTHO05D004204 1.8e-13 79.7 78 44.9
Gohir.D08G141501 Gossypium hirsutum HOM05D003573 ORTHO05D004204 1.8e-13 79.7 89 41.6
Gorai.004G145900 Gossypium raimondii HOM05D003573 ORTHO05D004204 1.8e-13 79.7 89 41.6
Mapoly0097s0058 Marchantia polymorpha HOM05D003573 ORTHO05D004204 1.8e-13 79.7 87 41.4
Hund21860 Selenicereus undatus HOM05D003573 ORTHO05D004204 1.8e-13 79.7 68 44.1
Gohir.A08G120700 Gossypium hirsutum HOM05D003573 ORTHO05D004204 2.4e-13 79.3 89 41.6
MD01G1039100 Malus domestica HOM05D003573 ORTHO05D004204 2.4e-13 79.3 96 38.5
MD15G1312600 Malus domestica HOM05D003573 ORTHO05D004204 2.4e-13 79.3 96 38.5
Nn8g40288 Nelumbo nucifera HOM05D003573 ORTHO05D004204 2.4e-13 79.3 89 38.2
QL12p018683 Quercus lobata HOM05D003573 ORTHO05D004204 2.4e-13 79.3 78 46.2
TWI12G1010 Tripterygium wilfordii HOM05D003573 ORTHO05D004204 2.4e-13 79.3 111 34.2
TWI56G0836 Tripterygium wilfordii HOM05D003573 ORTHO05D004204 2.4e-13 79.3 111 34.2
CiPaw.08G154000 Carya illinoinensis HOM05D003573 ORTHO05D004204 3.1e-13 79.0 68 44.1
Lalb_Chr18g0046131 Lupinus albus HOM05D003573 ORTHO05D004204 3.1e-13 79.0 74 43.2
Manes.01G231400 Manihot esculenta HOM05D003573 ORTHO05D004204 3.1e-13 79.0 74 43.2
VMungo0720G1255 Vigna mungo HOM05D003573 ORTHO05D004204 3.1e-13 79.0 96 37.5
EL10Ac4g09504 Beta vulgaris HOM05D003573 ORTHO05D004204 4.0e-13 78.6 68 42.6
Phvul.001G223900 Phaseolus vulgaris HOM05D003573 ORTHO05D004204 4.0e-13 78.6 96 38.5
Prupe.1G561100 Prunus persica HOM05D003573 ORTHO05D004204 4.0e-13 78.6 96 37.5
SalBow7G0068 Salvia bowleyana HOM05D003573 ORTHO05D004204 4.0e-13 78.6 89 39.3
Thecc.05G326000 Theobroma cacao HOM05D003573 ORTHO05D004204 4.0e-13 78.6 96 36.5
HPP92_026146 Vanilla planifolia HOM05D003573 ORTHO05D004204 4.0e-13 78.6 67 46.3
Zm00001eb131160 Zea mays HOM05D003573 ORTHO05D004204 4.0e-13 78.6 98 40.8
arahy.Tifrunner.gnm1.ann1.F3ZWVX Arachis hypogaea HOM05D003573 ORTHO05D004204 5.3e-13 78.2 86 36.0
arahy.Tifrunner.gnm1.ann1.QQCP7Q Arachis hypogaea HOM05D003573 ORTHO05D004204 5.3e-13 78.2 86 36.0
Ciclev10002622m.g Citrus clementina HOM05D003573 ORTHO05D004204 5.3e-13 78.2 106 34.0
PSO210G4149 Papaver somniferum HOM05D003573 ORTHO05D004204 5.3e-13 78.2 77 42.9
Phvul.007G203300 Phaseolus vulgaris HOM05D003573 ORTHO05D004204 5.3e-13 78.2 96 37.5
Potri.002G191700 Populus trichocarpa HOM05D003573 ORTHO05D004204 5.3e-13 78.2 73 45.2
QL03p017101 Quercus lobata HOM05D003573 ORTHO05D004204 5.3e-13 78.2 78 43.6
QL03p017386 Quercus lobata HOM05D003573 ORTHO05D004204 5.3e-13 78.2 78 43.6
Duzib106G1676 Durio zibethinus HOM05D003573 ORTHO05D004204 6.9e-13 77.8 96 36.5
Nn4g25452 Nelumbo nucifera HOM05D003573 ORTHO05D004204 6.9e-13 77.8 77 42.9
PSO729G0111 Papaver somniferum HOM05D003573 ORTHO05D004204 6.9e-13 77.8 89 36.0
PGR083G1465 Punica granatum HOM05D003573 ORTHO05D004204 6.9e-13 77.8 92 35.9
SGA_v2.0_scaffold37G14585 Striga asiatica HOM05D003573 ORTHO05D004204 6.9e-13 77.8 77 40.3
unitig_52.g17271 Utricularia gibba HOM05D003573 ORTHO05D004204 6.9e-13 77.8 68 45.6
BcaB03g13285 Brassica carinata HOM05D003573 ORTHO05D004204 9.0e-13 77.4 87 37.9
Gohir.A11G274600 Gossypium hirsutum HOM05D003573 ORTHO05D004204 9.0e-13 77.4 86 36.0
Gohir.D11G284800 Gossypium hirsutum HOM05D003573 ORTHO05D004204 9.0e-13 77.4 86 36.0
Gorai.007G308200 Gossypium raimondii HOM05D003573 ORTHO05D004204 9.0e-13 77.4 86 36.0
Lju99C11G5 Lonicera japonica HOM05D003573 ORTHO05D004204 9.0e-13 77.4 77 41.6
TPR.G2625 Trifolium pratense HOM05D003573 ORTHO05D004204 9.0e-13 77.4 74 41.9
TAR362G0946 Trochodendron aralioides HOM05D003573 ORTHO05D004204 9.0e-13 77.4 89 39.3
BcaC07g38492 Brassica carinata HOM05D003573 ORTHO05D004204 1.2e-12 77.0 83 38.6
C08p12620 Brassica napus HOM05D003573 ORTHO05D004204 1.2e-12 77.0 83 38.6
BolC8t48900H Brassica oleracea HOM05D003573 ORTHO05D004204 1.2e-12 77.0 83 38.6
Cpa.g.sc48.189 Carica papaya HOM05D003573 ORTHO05D004204 1.2e-12 77.0 84 42.9
Eucgr.L00252 Eucalyptus grandis HOM05D003573 ORTHO05D004204 1.2e-12 77.0 89 38.2
Glyma.10G145400 Glycine max HOM05D003573 ORTHO05D004204 1.2e-12 77.0 96 36.5
Glyma.20G094600 Glycine max HOM05D003573 ORTHO05D004204 1.2e-12 77.0 96 36.5
GSVIVG01028173001 Vitis vinifera HOM05D003573 ORTHO05D004204 1.2e-12 77.0 86 36.0
Actinidia16882 Actinidia chinensis HOM05D003573 ORTHO05D004204 1.5e-12 76.6 93 36.6
CSS0015989 Camellia sinensis var. sinensis HOM05D003573 ORTHO05D004204 1.5e-12 76.6 81 37.0
CDE02G0220 Ceratophyllum demersum HOM05D003573 ORTHO05D004204 1.5e-12 76.6 89 37.1
ClCG01G010840 Citrullus lanatus HOM05D003573 ORTHO05D004204 1.5e-12 76.6 68 42.6
MELO3C008924.2 Cucumis melo HOM05D003573 ORTHO05D004204 1.5e-12 76.6 68 42.6
CsaV3_4G030590 Cucumis sativus L. HOM05D003573 ORTHO05D004204 1.5e-12 76.6 68 42.6
Duzib177G0300 Durio zibethinus HOM05D003573 ORTHO05D004204 1.5e-12 76.6 78 41.0
PSO724G0869 Papaver somniferum HOM05D003573 ORTHO05D004204 1.5e-12 76.6 89 34.8
Sed0009739 Sechium edule HOM05D003573 ORTHO05D004204 1.5e-12 76.6 68 42.6
A06p06050 Brassica napus HOM05D003573 ORTHO05D004204 2.0e-12 76.3 83 37.3
BraA06t23816Z Brassica rapa HOM05D003573 ORTHO05D004204 2.0e-12 76.3 83 37.3
Ca_10187_v3 Cicer arietinum L. HOM05D003573 ORTHO05D004204 2.0e-12 76.3 96 36.5
FAN04G0689 Fragaria x ananassa HOM05D003573 ORTHO05D004204 2.0e-12 76.3 96 36.5
Lj5A325T70 Lonicera japonica HOM05D003573 ORTHO05D004204 2.0e-12 76.3 99 36.4
Actinidia35507 Actinidia chinensis HOM05D000740 ORTHO05D007141 2.6e-12 75.9 87 36.8
Aqoxy5G02735 Aquilegia oxysepala HOM05D003573 ORTHO05D004204 2.6e-12 75.9 101 33.7
MSTRG.27926 Avicennia marina HOM05D003573 ORTHO05D004204 2.6e-12 75.9 77 39.0
A08p34670 Brassica napus HOM05D003573 ORTHO05D004204 2.6e-12 75.9 83 38.6
BraA08t35375Z Brassica rapa HOM05D003573 ORTHO05D004204 2.6e-12 75.9 83 38.6
BraA08t35379Z Brassica rapa HOM05D003573 ORTHO05D004204 2.6e-12 75.9 83 38.6
Cfa006712 Carpinus fangiana HOM05D000740 ORTHO05D007141 2.6e-12 75.9 66 43.9
AUR62000429 Chenopodium quinoa HOM05D003573 ORTHO05D004204 2.6e-12 75.9 63 46.0
Dinv24480 Davidia involucrata HOM05D003573 ORTHO05D004204 2.6e-12 75.9 89 37.1
FvH4_5g30460 Fragaria vesca HOM05D003573 ORTHO05D004204 2.6e-12 75.9 96 36.5
FAN08G3373 Fragaria x ananassa HOM05D003573 ORTHO05D004204 2.6e-12 75.9 96 36.5
FAN18G4422 Fragaria x ananassa HOM05D003573 ORTHO05D004204 2.6e-12 75.9 96 36.5
Lalb_Chr15g0077691 Lupinus albus HOM05D003573 ORTHO05D004204 2.6e-12 75.9 68 41.2
MBI19_g32688_MAGBIO Magnolia biondii HOM05D003573 ORTHO05D004204 2.6e-12 75.9 93 37.6
CANSAT54G2769 Cannabis sativa HOM05D003573 ORTHO05D004204 3.4e-12 75.5 86 34.9
CDE08G1606 Ceratophyllum demersum HOM05D003573 ORTHO05D004204 3.4e-12 75.5 89 36.0
Thhalv10010041m.g Eutrema salsugineum HOM05D003573 ORTHO05D004204 3.4e-12 75.5 83 38.6
MBI18_g27390_MAGBIO Magnolia biondii HOM05D003573 ORTHO05D004204 3.4e-12 75.5 92 38.0
Manes.09G178900 Manihot esculenta HOM05D003573 ORTHO05D004204 3.4e-12 75.5 78 42.3
Medtr1g084620 Medicago truncatula HOM05D003573 ORTHO05D004204 3.4e-12 75.5 84 40.5
Peaxi162Scf00126g00120 Petunia axillaris HOM05D003573 ORTHO05D004204 3.4e-12 75.5 77 39.0
Potri.005G010400 Populus trichocarpa HOM05D003573 ORTHO05D004204 3.4e-12 75.5 68 42.6
Rhsim11G0098600 Rhododendron simsii HOM05D003573 ORTHO05D004204 3.4e-12 75.5 87 36.8
Sabra05G0007600 Salix brachista HOM05D003573 ORTHO05D004204 3.4e-12 75.5 68 42.6
TAR633G0103 Trochodendron aralioides HOM05D003573 ORTHO05D004204 3.4e-12 75.5 89 37.1
vmacro01587 Vaccinium macrocarpon HOM05D003573 ORTHO05D004204 3.4e-12 75.5 87 36.8
GSVIVG01031271001 Vitis vinifera HOM05D003573 ORTHO05D004204 3.4e-12 75.5 111 33.3
ATR0693G142 Amborella trichopoda HOM05D003573 ORTHO05D004204 4.4e-12 75.1 80 41.2
BcaB07g34129 Brassica carinata HOM05D003573 ORTHO05D004204 4.4e-12 75.1 83 37.3
BcaC05g24787 Brassica carinata HOM05D003573 ORTHO05D004204 4.4e-12 75.1 83 37.3
C05p07320 Brassica napus HOM05D003573 ORTHO05D004204 4.4e-12 75.1 83 37.3
BolC5t29490H Brassica oleracea HOM05D003573 ORTHO05D004204 4.4e-12 75.1 83 37.3
Cc02_g35110 Coffea canephora HOM05D003573 ORTHO05D004204 4.4e-12 75.1 77 39.0
Dinv30916 Davidia involucrata HOM05D003573 ORTHO05D004204 4.4e-12 75.1 77 40.3
Lj5g0026100 Lotus japonicus HOM05D003573 ORTHO05D004204 4.4e-12 75.1 96 35.4
Oeu013204.1 Olea europaea HOM05D003573 ORTHO05D004204 4.4e-12 75.1 89 38.2
RcHm_v2.0_Chr7g0224911 Rosa chinensis HOM05D003573 ORTHO05D004204 4.4e-12 75.1 96 35.4
Sc09g0002560 Simmondsia chinensis HOM05D003573 ORTHO05D004204 4.4e-12 75.1 64 43.8
THA.LOC104816856 Tarenaya hassleriana HOM05D003573 ORTHO05D004204 4.4e-12 75.1 68 41.2
Atru.chr2.232 Acer truncatum HOM05D003573 ORTHO05D004204 5.8e-12 74.7 68 39.7
arahy.Tifrunner.gnm1.ann1.1SW4RN Arachis hypogaea HOM05D003573 ORTHO05D004204 5.8e-12 74.7 98 36.7
BcaC07g41888 Brassica carinata HOM05D003573 ORTHO05D004204 5.8e-12 74.7 83 37.3
BcaC07g41891 Brassica carinata HOM05D003573 ORTHO05D004204 5.8e-12 74.7 83 37.3
BcaC07g41893 Brassica carinata HOM05D003573 ORTHO05D004204 5.8e-12 74.7 83 37.3
BcaC07g41897 Brassica carinata HOM05D003573 ORTHO05D004204 5.8e-12 74.7 83 37.3
C08p49520 Brassica napus HOM05D003573 ORTHO05D004204 5.8e-12 74.7 83 37.3
CSS0016641 Camellia sinensis var. sinensis HOM05D003573 ORTHO05D004204 5.8e-12 74.7 77 39.0
CARHR009300 Cardamine hirsuta HOM05D003573 ORTHO05D004204 5.8e-12 74.7 82 37.8
COL.COLO4_05522 Corchorus olitorius HOM05D000740 ORTHO05D007141 5.8e-12 74.7 83 36.1
Migut.N00950 Erythranthe guttata HOM05D003573 ORTHO05D004204 5.8e-12 74.7 77 40.3
FAN13G0155 Fragaria x ananassa HOM05D003573 ORTHO05D004204 5.8e-12 74.7 96 36.5
Hma1.2p1_0052F.1_g030630 Hydrangea macrophylla HOM05D003573 ORTHO05D004204 5.8e-12 74.7 89 37.1
Oeu016563.1 Olea europaea HOM05D003573 ORTHO05D004204 5.8e-12 74.7 89 37.1
Psat6g153480 Pisum sativum HOM05D003573 ORTHO05D004204 5.8e-12 74.7 70 42.9
Potri.013G006250 Populus trichocarpa HOM05D003573 ORTHO05D004204 5.8e-12 74.7 68 42.6
Sp1g07940 Schrenkiella parvula HOM05D003573 ORTHO05D004204 5.8e-12 74.7 83 37.3
SGA_v2.0_scaffold87G26967 Striga asiatica HOM05D003573 ORTHO05D004204 5.8e-12 74.7 77 37.7
TAR636G1598 Trochodendron aralioides HOM05D003573 ORTHO05D004204 5.8e-12 74.7 99 36.4
Aa31LG1G5790 Aethionema arabicum HOM05D003573 ORTHO05D004204 7.6e-12 74.3 68 42.6
AL1G19820 Arabidopsis lyrata HOM05D003573 ORTHO05D004204 7.6e-12 74.3 83 37.3
AT1G09330 Arabidopsis thaliana HOM05D003573 ORTHO05D004204 7.6e-12 74.3 83 37.3
Carub.0001s0867 Capsella rubella HOM05D003573 ORTHO05D004204 7.6e-12 74.3 83 37.3
Duzib138G0643 Durio zibethinus HOM05D003573 ORTHO05D004204 7.6e-12 74.3 77 42.9
Lsat_1_v5_gn_7_65220 Lactuca sativa HOM05D003573 ORTHO05D004204 7.6e-12 74.3 89 34.8
Manes.08G109500 Manihot esculenta HOM05D003573 ORTHO05D004204 7.6e-12 74.3 78 41.0
Nitab4.5_0002084g0030 Nicotiana tabacum HOM05D003573 ORTHO05D004204 7.6e-12 74.3 89 36.0
Nitab4.5_0011160g0010 Nicotiana tabacum HOM05D003573 ORTHO05D004204 7.6e-12 74.3 89 36.0
Solyc06g073270.4 Solanum lycopersicum HOM05D003573 ORTHO05D004204 7.6e-12 74.3 89 36.0
Sopen06g029630 Solanum pennellii HOM05D003573 ORTHO05D004204 7.6e-12 74.3 89 36.0
SGA_v2.0_scaffold4G01981 Striga asiatica HOM05D003573 ORTHO05D004204 7.6e-12 74.3 77 37.7
MSTRG.5152 Avicennia marina HOM05D003573 ORTHO05D004204 9.9e-12 73.9 77 37.7
BolC8t52489H Brassica oleracea HOM05D003573 ORTHO05D004204 9.9e-12 73.9 83 36.1
CAN.G65.170 Capsicum annuum HOM05D003573 ORTHO05D004204 9.9e-12 73.9 74 39.2
Duzib128G0433 Durio zibethinus HOM05D003573 ORTHO05D004204 9.9e-12 73.9 96 34.4
Sed0009799 Sechium edule HOM05D003573 ORTHO05D004204 9.9e-12 73.9 68 41.2
Haze_05090 Corylus avellana HOM05D003573 ORTHO05D004204 1.3e-11 73.6 84 38.1
Glyma.19G227600 Glycine max HOM05D003573 ORTHO05D004204 1.3e-11 73.6 68 41.2
Potri.014G116900 Populus trichocarpa HOM05D003573 ORTHO05D004204 1.3e-11 73.6 80 42.5
VMungo1383G3296 Vigna mungo HOM05D003573 ORTHO05D004204 1.3e-11 73.6 81 38.3
Peaxi162Scf00071g00032 Petunia axillaris HOM05D003573 ORTHO05D004204 1.7e-11 73.2 89 34.8
Peaxi162Scf00413g00825 Petunia axillaris HOM05D003573 ORTHO05D004204 1.7e-11 73.2 89 34.8
PGSC0003DMG400026912 Solanum tuberosum HOM05D003573 ORTHO05D004204 1.7e-11 73.2 89 36.0
ECA240G4779 Erigeron canadensis HOM05D003573 ORTHO05D004204 2.2e-11 72.8 84 38.1
CiPaw.08G086400 Carya illinoinensis HOM05D003573 ORTHO05D004204 2.9e-11 72.4 102 32.4
Dinv12111 Davidia involucrata HOM05D003573 ORTHO05D004204 2.9e-11 72.4 71 43.7
HanXRQChr09g0247451 Helianthus annuus HOM05D003573 ORTHO05D004204 2.9e-11 72.4 84 38.1
HanXRQChr09g0247491 Helianthus annuus HOM05D003573 ORTHO05D004204 2.9e-11 72.4 84 38.1
DCAR_025293 Daucus carota HOM05D003573 ORTHO05D004204 3.8e-11 72.0 90 33.3
THA.LOC104820547 Tarenaya hassleriana HOM05D003573 ORTHO05D004204 3.8e-11 72.0 68 39.7
Oeu000076.1 Olea europaea HOM05D003573 ORTHO05D004204 4.9e-11 71.6 77 36.4
Oeu019843.1 Olea europaea HOM05D003573 ORTHO05D004204 4.9e-11 71.6 77 36.4
Hma1.2p1_0052F.1_g030655 Hydrangea macrophylla HOM05D003573 ORTHO05D004204 6.4e-11 71.2 89 34.8
Sabra13G0005400 Salix brachista HOM05D000740 ORTHO05D007141 2.4e-10 69.3 64 42.2
PRCOL_00002267 Prasinoderma coloniale HOM05D003573 ORTHO05D004204 5.4e-10 68.2 85 37.6
Thecc.01G319700 Theobroma cacao HOM05D003573 ORTHO05D004204 7.1e-10 67.8 73 39.7
CBR_g21298 Chara braunii HOM05D003573 ORTHO05D004204 7.8e-09 64.3 68 45.6
Hma1.2p1_0052F.1_g030660 Hydrangea macrophylla HOM05D003573 ORTHO05D004204 1.9e-07 59.7 62 38.7
CBR_g30020 Chara braunii HOM05D003573 ORTHO05D004204 4.3e-07 58.5 68 38.2
MCO08G141 Micromonas commoda HOM05D003573 ORTHO05D004204 6.2e-06 54.7 72 36.1


User provided reference genes

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