Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c4_15010 Physcomitrium patens HOM05D004784 ORTHO05D005762 7.1e-245 850.1 421 100.0
Pp3c12_9500 Physcomitrium patens HOM05D004784 ORTHO05D005762 1.7e-217 759.2 415 89.6
AagrBONN_evm.TU.Sc2ySwM_344.1952 Anthoceros agrestis HOM05D004784 ORTHO05D005762 3.3e-181 638.6 415 74.0
Nitab4.5_0002695g0040 Nicotiana tabacum HOM05D004784 ORTHO05D005762 5.2e-179 631.3 412 72.8
Solyc02g080810.3 Solanum lycopersicum HOM05D004784 ORTHO05D005762 6.8e-179 630.9 412 72.8
Nitab4.5_0007963g0010 Nicotiana tabacum HOM05D004784 ORTHO05D005762 8.9e-179 630.6 412 72.6
Sopen02g025500 Solanum pennellii HOM05D004784 ORTHO05D005762 1.5e-178 629.8 412 72.6
PGSC0003DMG400016444 Solanum tuberosum HOM05D004784 ORTHO05D005762 2.6e-178 629.0 412 72.6
RcHm_v2.0_Chr5g0002651 Rosa chinensis HOM05D004784 ORTHO05D005762 3.4e-178 628.6 405 73.6
Sed0013135 Sechium edule HOM05D004784 ORTHO05D005762 3.4e-178 628.6 412 72.8
Oeu013835.1 Olea europaea HOM05D004784 ORTHO05D005762 7.5e-178 627.5 405 73.3
FvH4_3g01820 Fragaria vesca HOM05D004784 ORTHO05D005762 9.8e-178 627.1 405 73.3
FAN25G0478 Fragaria x ananassa HOM05D004784 ORTHO05D005762 1.7e-177 626.3 405 73.3
Peaxi162Scf00131g01117 Petunia axillaris HOM05D004784 ORTHO05D005762 2.2e-177 625.9 412 72.3
SalBow8G0639 Salvia bowleyana HOM05D004784 ORTHO05D005762 3.7e-177 625.2 404 73.5
Sed0006727 Sechium edule HOM05D004784 ORTHO05D005762 6.4e-177 624.4 412 72.3
Eucgr.L02773 Eucalyptus grandis HOM05D004784 ORTHO05D005762 8.3e-177 624.0 405 73.3
Aqoxy1G03119 Aquilegia oxysepala HOM05D004784 ORTHO05D005762 1.1e-176 623.6 405 72.3
MSTRG.7197 Avicennia marina HOM05D004784 ORTHO05D005762 1.1e-176 623.6 405 72.6
Oeu002744.1 Olea europaea HOM05D004784 ORTHO05D005762 1.1e-176 623.6 405 72.6
ClCG03G004610 Citrullus lanatus HOM05D004784 ORTHO05D005762 1.9e-176 622.9 412 72.3
Hund21422 Selenicereus undatus HOM05D004784 ORTHO05D005762 1.9e-176 622.9 405 73.1
MSTRG.14637 Avicennia marina HOM05D004784 ORTHO05D005762 4.1e-176 621.7 413 72.4
Prupe.4G018500 Prunus persica HOM05D004784 ORTHO05D005762 4.1e-176 621.7 405 72.6
MELO3C002444.2 Cucumis melo HOM05D004784 ORTHO05D005762 5.4e-176 621.3 412 71.8
Gorai.010G181500 Gossypium raimondii HOM05D004784 ORTHO05D005762 5.4e-176 621.3 412 72.1
Medtr4g132360 Medicago truncatula HOM05D004784 ORTHO05D005762 7.0e-176 620.9 412 71.8
Ca_21072_v3 Cicer arietinum L. HOM05D004784 ORTHO05D005762 9.2e-176 620.5 412 71.8
Dinv13913 Davidia involucrata HOM05D004784 ORTHO05D005762 9.2e-176 620.5 404 72.3
A09p64310 Brassica napus HOM05D004784 ORTHO05D005762 1.2e-175 620.2 405 72.1
BraA09t41774Z Brassica rapa HOM05D004784 ORTHO05D005762 1.2e-175 620.2 405 72.1
FAN21G1227 Fragaria x ananassa HOM05D004784 ORTHO05D005762 1.2e-175 620.2 405 72.8
Manes.17G025900 Manihot esculenta HOM05D004784 ORTHO05D005762 1.2e-175 620.2 412 72.1
PGR142G1596 Punica granatum HOM05D004784 ORTHO05D005762 1.2e-175 620.2 406 72.2
BolC8t52329H Brassica oleracea HOM05D004784 ORTHO05D005762 1.6e-175 619.8 405 71.9
Hma1.2p1_0091F.1_g046500 Hydrangea macrophylla HOM05D004784 ORTHO05D005762 1.6e-175 619.8 405 71.9
Lj1A1232G87 Lonicera japonica HOM05D004784 ORTHO05D005762 1.6e-175 619.8 405 72.8
CsaV3_1G010620 Cucumis sativus L. HOM05D004784 ORTHO05D005762 2.0e-175 619.4 412 71.8
TPR.G37066 Trifolium pratense HOM05D004784 ORTHO05D005762 2.0e-175 619.4 412 71.6
Gohir.A06G149200 Gossypium hirsutum HOM05D004784 ORTHO05D005762 2.7e-175 619.0 412 71.8
AT1G11860 Arabidopsis thaliana HOM05D004784 ORTHO05D005762 3.5e-175 618.6 405 72.1
C08p47920 Brassica napus HOM05D004784 ORTHO05D005762 3.5e-175 618.6 405 71.9
Thhalv10007781m.g Eutrema salsugineum HOM05D004784 ORTHO05D005762 3.5e-175 618.6 405 72.6
MBI02_g15378_MAGBIO Magnolia biondii HOM05D004784 ORTHO05D005762 3.5e-175 618.6 405 72.6
Gohir.D06G155300 Gossypium hirsutum HOM05D004784 ORTHO05D005762 4.6e-175 618.2 412 71.6
MD10G1323700 Malus domestica HOM05D004784 ORTHO05D005762 4.6e-175 618.2 412 71.6
Dinv20065 Davidia involucrata HOM05D004784 ORTHO05D005762 6.0e-175 617.8 404 72.8
Duzib192G0808 Durio zibethinus HOM05D004784 ORTHO05D005762 6.0e-175 617.8 412 72.1
Hma1.2p1_0298F.1_g117720 Hydrangea macrophylla HOM05D004784 ORTHO05D005762 6.0e-175 617.8 405 72.1
Phvul.003G080400 Phaseolus vulgaris HOM05D004784 ORTHO05D005762 6.0e-175 617.8 412 72.3
Ah.09g234740 Amaranthus hybridus HOM05D004784 ORTHO05D005762 7.8e-175 617.5 405 73.3
AL1G23030 Arabidopsis lyrata HOM05D004784 ORTHO05D005762 7.8e-175 617.5 405 72.1
Cc09_g01490 Coffea canephora HOM05D004784 ORTHO05D005762 7.8e-175 617.5 412 70.4
CANSAT56G2555 Cannabis sativa HOM05D004784 ORTHO05D005762 1.0e-174 617.1 412 71.8
Carub.0001s1151 Capsella rubella HOM05D004784 ORTHO05D005762 1.0e-174 617.1 405 71.9
Glyma.09G004700 Glycine max HOM05D004784 ORTHO05D005762 1.0e-174 617.1 412 71.8
TWI38G1114 Tripterygium wilfordii HOM05D004784 ORTHO05D005762 1.0e-174 617.1 405 73.3
Glyma.15G109300 Glycine max HOM05D004784 ORTHO05D005762 1.3e-174 616.7 412 72.1
Hund23455 Selenicereus undatus HOM05D004784 ORTHO05D005762 1.3e-174 616.7 405 73.1
Thecc.06G223500 Theobroma cacao HOM05D004784 ORTHO05D005762 1.3e-174 616.7 412 71.6
CAN.G1014.12 Capsicum annuum HOM05D004784 ORTHO05D005762 2.3e-174 615.9 412 70.6
Glyma.07G262100 Glycine max HOM05D004784 ORTHO05D005762 2.3e-174 615.9 412 71.1
Glyma.17G012000 Glycine max HOM05D004784 ORTHO05D005762 2.3e-174 615.9 412 71.6
Psat4g005920 Pisum sativum HOM05D004784 ORTHO05D005762 2.3e-174 615.9 412 71.4
Gohir.D05G174600 Gossypium hirsutum HOM05D004784 ORTHO05D005762 3.0e-174 615.5 412 71.6
Sp1g10470 Schrenkiella parvula HOM05D004784 ORTHO05D005762 3.0e-174 615.5 405 72.6
THA.LOC104809494 Tarenaya hassleriana HOM05D004784 ORTHO05D005762 3.0e-174 615.5 405 72.1
AUR62022970 Chenopodium quinoa HOM05D004784 ORTHO05D005762 3.9e-174 615.1 412 72.1
Migut.M01336 Erythranthe guttata HOM05D004784 ORTHO05D005762 3.9e-174 615.1 405 72.1
unitig_92.g28113 Utricularia gibba HOM05D004784 ORTHO05D005762 3.9e-174 615.1 412 70.9
COL.COLO4_31797 Corchorus olitorius HOM05D004784 ORTHO05D005762 5.0e-174 614.8 412 70.6
Gohir.A05G171500 Gossypium hirsutum HOM05D004784 ORTHO05D005762 5.0e-174 614.8 412 71.1
Aa31LG1G2870 Aethionema arabicum HOM05D004784 ORTHO05D005762 6.6e-174 614.4 405 71.6
arahy.Tifrunner.gnm1.ann1.EH8QHL Arachis hypogaea HOM05D004784 ORTHO05D005762 6.6e-174 614.4 412 71.8
PSO675G1799 Papaver somniferum HOM05D004784 ORTHO05D005762 6.6e-174 614.4 405 71.1
CARHR012170 Cardamine hirsuta HOM05D004784 ORTHO05D005762 8.6e-174 614.0 405 71.9
PSO541G3045 Papaver somniferum HOM05D004784 ORTHO05D005762 8.6e-174 614.0 405 71.1
Rhsim13G0152700 Rhododendron simsii HOM05D004784 ORTHO05D005762 8.6e-174 614.0 405 72.3
Ah.14g087950 Amaranthus hybridus HOM05D004784 ORTHO05D005762 1.1e-173 613.6 405 73.6
VMungo1215G1817 Vigna mungo HOM05D004784 ORTHO05D005762 1.1e-173 613.6 412 71.6
AUR62012328 Chenopodium quinoa HOM05D004784 ORTHO05D005762 1.5e-173 613.2 412 71.8
Lj6g0010262 Lotus japonicus HOM05D004784 ORTHO05D005762 1.5e-173 613.2 412 71.4
TWI63G0560 Tripterygium wilfordii HOM05D004784 ORTHO05D005762 1.5e-173 613.2 405 72.6
Ciclev10015433m.g Citrus clementina HOM05D004784 ORTHO05D005762 1.9e-173 612.8 405 71.6
Lalb_Chr18g0056491 Lupinus albus HOM05D004784 ORTHO05D005762 1.9e-173 612.8 412 71.4
BraA08t35239Z Brassica rapa HOM05D004784 ORTHO05D005762 2.5e-173 612.5 405 71.6
QL05p072692 Quercus lobata HOM05D004784 ORTHO05D005762 2.5e-173 612.5 412 71.1
Sc24g0000220 Simmondsia chinensis HOM05D004784 ORTHO05D005762 2.5e-173 612.5 412 71.6
Atru.chr10.2254 Acer truncatum HOM05D004784 ORTHO05D005762 4.3e-173 611.7 405 71.1
C08p14960 Brassica napus HOM05D004784 ORTHO05D005762 5.6e-173 611.3 405 71.1
BolC8t49127H Brassica oleracea HOM05D004784 ORTHO05D005762 5.6e-173 611.3 405 71.1
QL02p099920 Quercus lobata HOM05D004784 ORTHO05D005762 5.6e-173 611.3 405 70.9
Lalb_Chr15g0087671 Lupinus albus HOM05D004784 ORTHO05D005762 1.2e-172 610.1 412 71.1
CiPaw.09G093700 Carya illinoinensis HOM05D004784 ORTHO05D005762 1.6e-172 609.8 405 70.6
CiPaw.10G073000 Carya illinoinensis HOM05D004784 ORTHO05D005762 3.6e-172 608.6 405 71.1
vmacro03682 Vaccinium macrocarpon HOM05D004784 ORTHO05D005762 4.7e-172 608.2 420 71.0
DCAR_008168 Daucus carota HOM05D004784 ORTHO05D005762 6.2e-172 607.8 417 69.5
Sc05g0009310 Simmondsia chinensis HOM05D004784 ORTHO05D005762 6.2e-172 607.8 412 71.4
Phvul.006G148700 Phaseolus vulgaris HOM05D004784 ORTHO05D005762 1.4e-171 606.7 411 70.6
SEGI_27497 Sequoiadendron giganteum HOM05D004784 ORTHO05D005762 1.4e-171 606.7 406 70.2
Cfa000202 Carpinus fangiana HOM05D004784 ORTHO05D005762 3.1e-171 605.5 405 70.1
Mapoly0129s0024 Marchantia polymorpha HOM05D004784 ORTHO05D005762 3.1e-171 605.5 414 70.0
TAR629G2745 Trochodendron aralioides HOM05D004784 ORTHO05D005762 3.1e-171 605.5 404 71.0
Potri.011G006800 Populus trichocarpa HOM05D004784 ORTHO05D005762 4.0e-171 605.1 405 70.9
Haze_06821 Corylus avellana HOM05D004784 ORTHO05D005762 5.2e-171 604.7 405 70.1
Potri.004G009600 Populus trichocarpa HOM05D004784 ORTHO05D005762 5.2e-171 604.7 405 70.4
CDE05G1701 Ceratophyllum demersum HOM05D004784 ORTHO05D005762 1.5e-170 603.2 405 69.9
Sabra11G0005900 Salix brachista HOM05D004784 ORTHO05D005762 2.0e-170 602.8 405 70.6
Nn1g03473 Nelumbo nucifera HOM05D004784 ORTHO05D005762 4.4e-170 601.7 454 65.0
HPP92_004130 Vanilla planifolia HOM05D004784 ORTHO05D005762 7.5e-170 600.9 406 69.7
CDE02G4424 Ceratophyllum demersum HOM05D004784 ORTHO05D005762 9.9e-170 600.5 405 69.6
arahy.Tifrunner.gnm1.ann1.PLZ2LX Arachis hypogaea HOM05D004784 ORTHO05D005762 2.9e-169 599.0 404 71.5
Os04g0623800 Oryza sativa ssp. japonica HOM05D004784 ORTHO05D005762 3.2e-168 595.5 399 70.7
SGA_v2.0_scaffold7G03812 Striga asiatica HOM05D004784 ORTHO05D005762 7.1e-168 594.3 431 67.1
Lsat_1_v5_gn_7_16480 Lactuca sativa HOM05D004784 ORTHO05D005762 1.2e-167 593.6 397 72.0
RhsimUnG0232700 Rhododendron simsii HOM05D004784 ORTHO05D005762 1.6e-167 593.2 448 65.4
Zm00001eb070250 Zea mays HOM05D004784 ORTHO05D005762 7.8e-167 590.9 392 70.7
EL10Ac6g15683 Beta vulgaris HOM05D004784 ORTHO05D005762 1.3e-166 590.1 448 65.4
vmacro22539 Vaccinium macrocarpon HOM05D004784 ORTHO05D005762 5.1e-166 588.2 471 63.1
ATR0794G107 Amborella trichopoda HOM05D004784 ORTHO05D005762 1.1e-165 587.0 416 68.3
GSVIVG01012702001 Vitis vinifera HOM05D004784 ORTHO05D005762 5.6e-165 584.7 356 75.8
Nn030s41595 Nelumbo nucifera HOM05D004784 ORTHO05D005762 1.2e-164 583.6 412 68.4
HanXRQChr15g0470421 Helianthus annuus HOM05D004784 ORTHO05D005762 1.1e-163 580.5 356 76.1
Gorai.009G179900 Gossypium raimondii HOM05D004784 ORTHO05D005762 6.8e-163 577.8 388 71.4
BcaB03g13227 Brassica carinata HOM05D004784 ORTHO05D005762 3.4e-162 575.5 356 74.7
A08p33210 Brassica napus HOM05D004784 ORTHO05D005762 2.9e-161 572.4 405 68.1
Oeu040336.3 Olea europaea HOM05D004784 ORTHO05D005762 2.9e-161 572.4 516 57.6
Sabra04G0005000 Salix brachista HOM05D004784 ORTHO05D005762 7.8e-159 564.3 383 69.7
SMO352G0047 Selaginella moellendorffii HOM05D004784 ORTHO05D005762 8.6e-158 560.8 389 68.1
ECA236G1893 Erigeron canadensis HOM05D004784 ORTHO05D005762 3.9e-150 535.4 412 64.3
Cre03.g193750 Chlamydomonas reinhardtii HOM05D004784 ORTHO05D005762 2.5e-141 506.1 420 61.4
TAR627G1106 Trochodendron aralioides HOM05D004784 ORTHO05D005762 6.0e-135 485.0 318 72.3
TAR626G0807 Trochodendron aralioides HOM05D004784 ORTHO05D005762 3.0e-126 456.1 315 68.3
CSS0014504 Camellia sinensis var. sinensis HOM05D004784 ORTHO05D005762 4.8e-124 448.7 395 58.5
A06p08340 Brassica napus HOM05D004784 ORTHO05D005762 3.4e-122 442.6 405 55.8
MCO15G045 Micromonas commoda HOM05D004784 ORTHO05D005762 8.5e-121 438.0 416 53.8
PRCOL_00007041 Prasinoderma coloniale HOM05D004784 ORTHO05D005762 1.2e-119 434.1 368 58.7
Actinidia26902 Actinidia chinensis HOM05D004784 ORTHO05D005762 2.7e-119 433.0 309 68.0
Eucgr.E03909 Eucalyptus grandis HOM05D004784 ORTHO05D005762 2.9e-113 412.9 244 79.9
Atru.chr8.533 Acer truncatum HOM05D004784 ORTHO05D005762 2.6e-98 363.2 256 67.2
MD05G1348800 Malus domestica HOM05D004784 ORTHO05D005762 9.1e-91 338.2 236 69.1
Lalb_Chr20g0118761 Lupinus albus HOM05D004784 ORTHO05D005762 1.0e-89 334.7 233 70.0
Cpa.g.sc152.29 Carica papaya HOM05D004784 ORTHO05D005762 8.3e-84 315.1 195 73.3
BraA06t24032Z Brassica rapa HOM05D000911 ORTHO05D001266 1.7e-81 307.4 237 64.1
Cfa026602 Carpinus fangiana HOM05D004784 ORTHO05D005762 1.9e-80 303.9 400 42.8
Haze_26660 Corylus avellana HOM05D004784 ORTHO05D005762 1.1e-72 278.1 400 42.2
CBR_g24348 Chara braunii HOM05D004784 ORTHO05D005762 1.4e-70 271.2 180 73.9
Sopen07g011340 Solanum pennellii HOM05D004784 ORTHO05D005762 5.1e-57 226.1 180 60.0
EL10Ac1g01135 Beta vulgaris HOM05D004784 ORTHO05D005762 1.2e-50 204.9 145 66.9
EL10Ac2g03767 Beta vulgaris HOM05D004784 ORTHO05D005762 2.1e-50 204.1 144 67.4
Atru.chr8.531 Acer truncatum HOM05D004784 ORTHO05D005762 4.3e-48 196.4 124 72.6
Actinidia05506 Actinidia chinensis HOM05D004784 ORTHO05D005762 3.9e-41 173.3 104 77.9
Actinidia11861 Actinidia chinensis HOM05D004784 ORTHO05D005762 3.0e-17 94.0 58 69.0
Actinidia15969 Actinidia chinensis HOM05D004784 ORTHO05D058202 1.3e-15 88.6 128 40.6
COL.COLO4_11781 Corchorus olitorius HOM05D006894 ORTHO05D008724 1.4e-14 85.1 347 25.9
MD08G1235500 Malus domestica HOM05D006894 ORTHO05D008724 3.1e-14 84.0 350 26.0
Thecc.02G114400 Theobroma cacao HOM05D006894 ORTHO05D008724 6.9e-14 82.8 303 27.4
GSVIVG01022874001 Vitis vinifera HOM05D006894 ORTHO05D008724 2.0e-13 81.3 368 25.8
FAN08G3638 Fragaria x ananassa HOM05D006894 ORTHO05D008724 2.6e-13 80.9 348 25.6
Prupe.1G571400 Prunus persica HOM05D006894 ORTHO05D008724 3.4e-13 80.5 335 26.0
RcHm_v2.0_Chr7g0221781 Rosa chinensis HOM05D006894 ORTHO05D008724 3.4e-13 80.5 351 25.4
Manes.07G017700 Manihot esculenta HOM05D006894 ORTHO05D008724 4.5e-13 80.1 350 24.9
Gohir.A03G193500 Gossypium hirsutum HOM05D006894 ORTHO05D008724 5.8e-13 79.7 331 26.9
Duzib248G0689 Durio zibethinus HOM05D006894 ORTHO05D008724 7.6e-13 79.3 303 26.1
Medtr8g088790 Medicago truncatula HOM05D006894 ORTHO05D008724 1.0e-12 79.0 289 26.3
CsaV3_6G037480 Cucumis sativus L. HOM05D006894 ORTHO05D008724 1.7e-12 78.2 308 24.0
QL02p099211 Quercus lobata HOM05D006894 ORTHO05D008724 2.2e-12 77.8 347 25.1
Lalb_Chr12g0204471 Lupinus albus HOM05D006894 ORTHO05D008724 8.4e-12 75.9 340 24.4
Lj4g0002387 Lotus japonicus HOM05D006894 ORTHO05D008724 2.5e-11 74.3 348 25.3
Ciclev10001270m.g Citrus clementina HOM05D006894 ORTHO05D008724 5.5e-11 73.2 291 24.4
Glyma.05G168900 Glycine max HOM05D006894 ORTHO05D008724 5.5e-11 73.2 327 25.7
ATR0665G083 Amborella trichopoda HOM05D006894 ORTHO05D008724 7.1e-11 72.8 292 25.3
arahy.Tifrunner.gnm1.ann1.7VS6FJ Arachis hypogaea HOM05D006894 ORTHO05D008724 1.2e-10 72.0 363 23.7
Cfa005507 Carpinus fangiana HOM05D006894 ORTHO05D008724 1.2e-10 72.0 349 23.8
arahy.Tifrunner.gnm1.ann1.NZQI89 Arachis hypogaea HOM05D006894 ORTHO05D008724 1.6e-10 71.6 332 24.1
VMungo0251G0921 Vigna mungo HOM05D006894 ORTHO05D008724 4.6e-10 70.1 332 25.0
CANSAT11G1074 Cannabis sativa HOM05D006894 ORTHO05D008724 6.0e-10 69.7 358 23.5
CiPaw.05G048800 Carya illinoinensis HOM05D006894 ORTHO05D008724 6.0e-10 69.7 348 23.3
FAN04G0479 Fragaria x ananassa HOM05D006894 ORTHO05D008724 6.3e-07 59.7 347 22.5


User provided reference genes

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