Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c3_37790 Physcomitrium patens HOM05D009896 ORTHO05D016373 1.2e-62 243.0 124 100.0
Pp3c9_12713 Physcomitrium patens HOM05D000228 ORTHO05D016373 2.0e-46 189.1 123 78.9
Pp3c25_15150 Physcomitrium patens HOM05D000228 ORTHO05D016373 4.5e-46 188.0 123 78.0
Pp3c4_14790 Physcomitrium patens HOM05D009896 ORTHO05D016373 1.7e-45 186.0 123 77.2
Pp3c9_17780 Physcomitrium patens HOM05D009896 ORTHO05D016373 9.4e-44 180.3 123 76.4
Pp3c10_11520 Physcomitrium patens HOM05D000228 ORTHO05D016373 2.3e-42 175.6 123 74.8
Pp3c3_35870 Physcomitrium patens HOM05D000002 ORTHO05D016373 2.0e-41 172.6 123 72.4
Pp3c5_18590 Physcomitrium patens HOM05D009896 ORTHO05D016373 5.7e-41 171.0 123 72.4
Pp3c17_12280 Physcomitrium patens HOM05D009896 ORTHO05D016373 5.0e-29 131.3 123 60.2
Pp3c2_30110 Physcomitrium patens HOM05D009896 ORTHO05D318869 2.3e-10 69.3 70 57.1
EL10Ac1g02243 Beta vulgaris HOM05D000228 ORTHO05D001545 2.2e-08 62.8 127 29.9
Ah.04g153590 Amaranthus hybridus HOM05D000228 ORTHO05D001545 4.9e-08 61.6 129 31.0
TAR623G0006 Trochodendron aralioides HOM05D000228 ORTHO05D001545 4.9e-08 61.6 123 32.5
ATR0594G163 Amborella trichopoda HOM05D000228 ORTHO05D001545 6.3e-08 61.2 123 34.1
Pp3c17_4860 Physcomitrium patens HOM05D000228 ORTHO05D001545 6.3e-08 61.2 123 31.7
AUR62035701 Chenopodium quinoa HOM05D000228 ORTHO05D001545 8.3e-08 60.8 127 33.9
Aa31LG1G12200 Aethionema arabicum HOM05D000228 ORTHO05D001545 1.1e-07 60.5 133 29.3
CANSAT56G4454 Cannabis sativa HOM05D000228 ORTHO05D001545 3.1e-07 58.9 132 31.1
PSO017G3640 Papaver somniferum HOM05D000228 ORTHO05D001545 3.1e-07 58.9 129 29.5
Lsat_1_v5_gn_9_21100 Lactuca sativa HOM05D000228 ORTHO05D001545 5.4e-07 58.2 129 28.7
MD03G1106800 Malus domestica HOM05D000228 ORTHO05D001545 5.4e-07 58.2 137 27.0
TPR.G2993 Trifolium pratense HOM05D000228 ORTHO05D001545 9.2e-07 57.4 128 31.2
Aa31LG1G12170 Aethionema arabicum HOM05D000228 ORTHO05D001545 1.2e-06 57.0 124 29.8
CDE02G3052 Ceratophyllum demersum HOM05D000228 ORTHO05D001545 1.2e-06 57.0 123 30.9
arahy.Tifrunner.gnm1.ann1.NH5KQA Arachis hypogaea HOM05D000228 ORTHO05D001545 1.6e-06 56.6 129 30.2
BolC2t07289H Brassica oleracea HOM05D000228 ORTHO05D001545 1.6e-06 56.6 132 29.5
BraA02t05745Z Brassica rapa HOM05D000228 ORTHO05D001545 1.6e-06 56.6 132 29.5
Cfa011405 Carpinus fangiana HOM05D000228 ORTHO05D001545 1.6e-06 56.6 129 31.8
Haze_23976 Corylus avellana HOM05D000228 ORTHO05D001545 1.6e-06 56.6 129 32.6
Lalb_Chr01g0003921 Lupinus albus HOM05D000228 ORTHO05D001545 1.6e-06 56.6 129 29.5
Zm00001eb078830 Zea mays HOM05D000228 ORTHO05D001545 1.6e-06 56.6 130 31.5
FvH4_3g34290 Fragaria vesca HOM05D000228 ORTHO05D001545 2.0e-06 56.2 138 27.5
FAN11G3166 Fragaria x ananassa HOM05D000228 ORTHO05D001545 2.0e-06 56.2 138 27.5
FAN16G3688 Fragaria x ananassa HOM05D000228 ORTHO05D001545 2.0e-06 56.2 138 27.5
FAN21G2820 Fragaria x ananassa HOM05D000228 ORTHO05D001545 2.0e-06 56.2 138 27.5
Sc19g0005360 Simmondsia chinensis HOM05D000228 ORTHO05D001545 2.0e-06 56.2 127 29.1
ECA247G0560 Erigeron canadensis HOM05D000228 ORTHO05D001545 2.7e-06 55.8 128 28.9
RcHm_v2.0_Chr5g0061861 Rosa chinensis HOM05D000228 ORTHO05D001545 2.7e-06 55.8 138 27.5
Ca_19216_v3 Cicer arietinum L. HOM05D000228 ORTHO05D001545 3.5e-06 55.5 133 29.3
Lj1g0011731 Lotus japonicus HOM05D000228 ORTHO05D001545 3.5e-06 55.5 126 31.0
arahy.Tifrunner.gnm1.ann1.E1FMMY Arachis hypogaea HOM05D000228 ORTHO05D001545 4.5e-06 55.1 129 29.5
QL06p007429 Quercus lobata HOM05D000228 ORTHO05D001545 4.5e-06 55.1 93 31.2
AT5G60040 Arabidopsis thaliana HOM05D000228 ORTHO05D001545 5.9e-06 54.7 132 28.8
HanXRQChr04g0106851 Helianthus annuus HOM05D000228 ORTHO05D001545 5.9e-06 54.7 128 28.1
Manes.17G000400 Manihot esculenta HOM05D000228 ORTHO05D001545 5.9e-06 54.7 133 30.1
Os04g0492300 Oryza sativa ssp. japonica HOM05D000228 ORTHO05D001545 5.9e-06 54.7 127 29.9
Sp6g21700 Schrenkiella parvula HOM05D000228 ORTHO05D001545 5.9e-06 54.7 132 29.5
AagrBONN_evm.TU.Sc2ySwM_362.2196 Anthoceros agrestis HOM05D000228 ORTHO05D001545 7.7e-06 54.3 129 28.7
AL8G36630 Arabidopsis lyrata HOM05D000228 ORTHO05D001545 7.7e-06 54.3 132 28.8
BcaB05g22610 Brassica carinata HOM05D000228 ORTHO05D001545 7.7e-06 54.3 131 28.2
Carub.0008s2074 Capsella rubella HOM05D000228 ORTHO05D001545 7.7e-06 54.3 132 28.8
Thhalv10012446m.g Eutrema salsugineum HOM05D000228 ORTHO05D001545 7.7e-06 54.3 132 28.8
Glyma.11G147317 Glycine max HOM05D000228 ORTHO05D001545 7.7e-06 54.3 126 30.2


User provided reference genes

Program Settings