Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c3_35180 Physcomitrium patens HOM05D004713 ORTHO05D005658 2.1e-129 465.7 233 100.0
Pp3c8_1940 Physcomitrium patens HOM05D004713 ORTHO05D005658 6.8e-120 434.1 232 93.1
Mapoly0015s0074 Marchantia polymorpha HOM05D004713 ORTHO05D005658 9.2e-93 344.0 232 75.4
AagrBONN_evm.TU.Sc2ySwM_228.1073 Anthoceros agrestis HOM05D004713 ORTHO05D005658 1.4e-85 320.1 233 69.5
SEGI_32030 Sequoiadendron giganteum HOM05D004713 ORTHO05D005658 3.6e-81 305.4 238 65.5
HanXRQChr13g0407301 Helianthus annuus HOM05D004713 ORTHO05D005658 2.3e-80 302.8 211 70.6
Lsat_1_v5_gn_0_5321 Lactuca sativa HOM05D004713 ORTHO05D005658 4.0e-80 302.0 228 68.0
Peaxi162Scf00485g00109 Petunia axillaris HOM05D004713 ORTHO05D005658 4.0e-80 302.0 227 67.0
Hma1.2p1_1258F.1_g270890 Hydrangea macrophylla HOM05D004713 ORTHO05D005658 6.8e-80 301.2 225 65.8
Hma1.2p1_2769F.1_g328190 Hydrangea macrophylla HOM05D004713 ORTHO05D005658 8.9e-80 300.8 225 65.8
SMO358G0667 Selaginella moellendorffii HOM05D004713 ORTHO05D005658 8.9e-80 300.8 226 65.5
Dinv13841 Davidia involucrata HOM05D004713 ORTHO05D005658 1.5e-79 300.1 226 65.5
CBR_g52397 Chara braunii HOM05D004713 ORTHO05D005658 2.0e-79 299.7 239 65.3
TAR627G1043 Trochodendron aralioides HOM05D004713 ORTHO05D005658 4.4e-79 298.5 228 65.4
CiPaw.11G178400 Carya illinoinensis HOM05D004713 ORTHO05D005658 5.8e-79 298.1 227 64.8
TWI36G0474 Tripterygium wilfordii HOM05D004713 ORTHO05D005658 5.8e-79 298.1 227 64.8
ECA240G4341 Erigeron canadensis HOM05D004713 ORTHO05D005658 3.8e-78 295.4 230 67.0
Migut.M00361 Erythranthe guttata HOM05D004713 ORTHO05D005658 3.8e-78 295.4 228 66.2
GSVIVG01014457001 Vitis vinifera HOM05D004713 ORTHO05D005658 6.4e-78 294.7 229 65.1
Sc21g0002180 Simmondsia chinensis HOM05D004713 ORTHO05D005658 1.4e-77 293.5 229 64.6
Cfa020490 Carpinus fangiana HOM05D004713 ORTHO05D005658 1.9e-77 293.1 227 63.4
Sed0023828 Sechium edule HOM05D004713 ORTHO05D005658 1.9e-77 293.1 228 64.9
Solyc12g005630.2 Solanum lycopersicum HOM05D004713 ORTHO05D005658 1.9e-77 293.1 231 65.4
PGSC0003DMG400013751 Solanum tuberosum HOM05D004713 ORTHO05D005658 2.4e-77 292.7 231 65.8
Aqoxy1G03929 Aquilegia oxysepala HOM05D004713 ORTHO05D005658 3.2e-77 292.4 226 63.3
Oeu019373.1 Olea europaea HOM05D004713 ORTHO05D005658 3.2e-77 292.4 187 72.7
Sabra13G0120100 Salix brachista HOM05D004713 ORTHO05D005658 3.2e-77 292.4 228 63.2
CiPaw.12G123600 Carya illinoinensis HOM05D004713 ORTHO05D005658 5.4e-77 291.6 230 63.0
Glyma.12G199400 Glycine max HOM05D004713 ORTHO05D005658 9.2e-77 290.8 227 63.9
Glyma.13G302900 Glycine max HOM05D004713 ORTHO05D005658 9.2e-77 290.8 227 63.4
Potri.013G148900 Populus trichocarpa HOM05D004713 ORTHO05D005658 1.2e-76 290.4 228 66.2
Sopen12g001560 Solanum pennellii HOM05D004713 ORTHO05D005658 1.6e-76 290.0 231 65.8
THA.LOC104801189 Tarenaya hassleriana HOM05D004713 ORTHO05D005658 2.1e-76 289.7 227 63.9
Potri.019G118500 Populus trichocarpa HOM05D004713 ORTHO05D005658 3.5e-76 288.9 228 63.6
GSVIVG01015713001 Vitis vinifera HOM05D004713 ORTHO05D005658 3.5e-76 288.9 183 73.2
MSTRG.6530 Avicennia marina HOM05D004713 ORTHO05D005658 4.6e-76 288.5 228 64.5
Actinidia35286 Actinidia chinensis HOM05D004713 ORTHO05D005658 6.0e-76 288.1 228 64.5
CSS0013440 Camellia sinensis var. sinensis HOM05D004713 ORTHO05D005658 6.0e-76 288.1 228 62.3
PSO541G4076 Papaver somniferum HOM05D004713 ORTHO05D005658 6.0e-76 288.1 225 65.3
PSO675G3482 Papaver somniferum HOM05D004713 ORTHO05D005658 6.0e-76 288.1 225 65.3
Aa31LG5G2780 Aethionema arabicum HOM05D004713 ORTHO05D005658 7.8e-76 287.7 202 67.8
Prupe.3G228100 Prunus persica HOM05D004713 ORTHO05D005658 7.8e-76 287.7 227 65.2
SGA_v2.0_scaffold159G37610 Striga asiatica HOM05D004713 ORTHO05D005658 7.8e-76 287.7 227 63.9
PGR083G1071 Punica granatum HOM05D004713 ORTHO05D005658 1.0e-75 287.3 231 62.3
VMungo1080G0078 Vigna mungo HOM05D004713 ORTHO05D005658 1.0e-75 287.3 227 63.4
Ciclev10016706m.g Citrus clementina HOM05D004713 ORTHO05D005658 1.3e-75 287.0 205 67.8
CANSAT11G1961 Cannabis sativa HOM05D004713 ORTHO05D005658 2.3e-75 286.2 227 62.6
FAN02G1221 Fragaria x ananassa HOM05D004713 ORTHO05D005658 2.3e-75 286.2 226 63.3
vmacro09572 Vaccinium macrocarpon HOM05D004713 ORTHO05D005658 2.3e-75 286.2 226 63.3
Duzib248G1304 Durio zibethinus HOM05D004713 ORTHO05D005658 3.9e-75 285.4 228 64.5
Lj1A855G17 Lonicera japonica HOM05D004713 ORTHO05D005658 3.9e-75 285.4 233 62.7
Nn1g03832 Nelumbo nucifera HOM05D004713 ORTHO05D005658 3.9e-75 285.4 228 64.0
Lalb_Chr14g0366531 Lupinus albus HOM05D004713 ORTHO05D005658 5.1e-75 285.0 225 65.3
Phvul.005G109400 Phaseolus vulgaris HOM05D004713 ORTHO05D005658 5.1e-75 285.0 227 62.6
FAN05G5200 Fragaria x ananassa HOM05D004713 ORTHO05D005658 6.6e-75 284.6 226 63.3
FAN05G5597 Fragaria x ananassa HOM05D004713 ORTHO05D005658 6.6e-75 284.6 226 63.3
Nitab4.5_0002714g0020 Nicotiana tabacum HOM05D004713 ORTHO05D005658 6.6e-75 284.6 230 65.7
RhsimUnG0257700 Rhododendron simsii HOM05D004713 ORTHO05D005658 6.6e-75 284.6 233 60.9
CAN.G980.4 Capsicum annuum HOM05D004713 ORTHO05D005658 1.1e-74 283.9 237 63.3
Atru.chr6.3090 Acer truncatum HOM05D004713 ORTHO05D005658 1.5e-74 283.5 229 63.8
AUR62025154 Chenopodium quinoa HOM05D004713 ORTHO05D005658 1.9e-74 283.1 229 64.2
FvH4_6g44370 Fragaria vesca HOM05D004713 ORTHO05D005658 1.9e-74 283.1 226 62.8
Sabra19G0119100 Salix brachista HOM05D004713 ORTHO05D005658 1.9e-74 283.1 228 62.7
Sabra19G0134800 Salix brachista HOM05D004713 ORTHO05D005658 1.9e-74 283.1 228 62.7
Lj3g0005468 Lotus japonicus HOM05D004713 ORTHO05D005658 4.3e-74 282.0 227 63.0
Lj8C161T8 Lonicera japonica HOM05D004713 ORTHO05D005658 5.6e-74 281.6 254 59.8
Lalb_Chr24g0399801 Lupinus albus HOM05D004713 ORTHO05D005658 5.6e-74 281.6 234 63.2
MCO06G171 Micromonas commoda HOM05D004713 ORTHO05D005658 5.6e-74 281.6 179 72.6
DCAR_008695 Daucus carota HOM05D004713 ORTHO05D005658 7.3e-74 281.2 183 72.1
MD17G1086300 Malus domestica HOM05D004713 ORTHO05D005658 7.3e-74 281.2 235 63.0
RcHm_v2.0_Chr2g0161301 Rosa chinensis HOM05D004713 ORTHO05D005658 7.3e-74 281.2 226 62.4
SalBow7G3919 Salvia bowleyana HOM05D004713 ORTHO05D005658 7.3e-74 281.2 268 57.8
Haze_09549 Corylus avellana HOM05D004713 ORTHO05D005658 1.2e-73 280.4 229 62.0
Hund01214 Selenicereus undatus HOM05D004713 ORTHO05D005658 2.1e-73 279.6 230 63.0
arahy.Tifrunner.gnm1.ann1.39S8LV Arachis hypogaea HOM05D004713 ORTHO05D005658 2.8e-73 279.3 183 71.0
CsaV3_7G004050 Cucumis sativus L. HOM05D004713 ORTHO05D005658 2.8e-73 279.3 228 61.8
HanXRQChr03g0077251 Helianthus annuus HOM05D004713 ORTHO05D005658 2.8e-73 279.3 236 63.1
arahy.Tifrunner.gnm1.ann1.V1P8P6 Arachis hypogaea HOM05D004713 ORTHO05D005658 3.6e-73 278.9 228 64.0
Gohir.A03G160900 Gossypium hirsutum HOM05D004713 ORTHO05D005658 4.7e-73 278.5 204 66.2
ClCG02G001400 Citrullus lanatus HOM05D004713 ORTHO05D005658 6.2e-73 278.1 238 60.1
Nitab4.5_0014322g0020 Nicotiana tabacum HOM05D004713 ORTHO05D005658 6.2e-73 278.1 230 64.3
QL08p036617 Quercus lobata HOM05D004713 ORTHO05D005658 6.2e-73 278.1 228 62.7
Manes.13G077148 Manihot esculenta HOM05D004713 ORTHO05D005658 8.1e-73 277.7 231 62.3
Thecc.02G168200 Theobroma cacao HOM05D004713 ORTHO05D005658 8.1e-73 277.7 228 61.8
Ah.01g014440 Amaranthus hybridus HOM05D004713 ORTHO05D005658 1.1e-72 277.3 230 62.2
arahy.Tifrunner.gnm1.ann1.NN0MZU Arachis hypogaea HOM05D004713 ORTHO05D005658 1.4e-72 276.9 231 62.8
AUR62033720 Chenopodium quinoa HOM05D004713 ORTHO05D005658 1.4e-72 276.9 229 62.9
Duzib132G0433 Durio zibethinus HOM05D004713 ORTHO05D005658 1.4e-72 276.9 227 62.1
Gohir.A03G161000 Gossypium hirsutum HOM05D004713 ORTHO05D005658 1.4e-72 276.9 227 62.1
Psat5g267960 Pisum sativum HOM05D004713 ORTHO05D005658 1.4e-72 276.9 230 62.2
Carub.0006s3378 Capsella rubella HOM05D004713 ORTHO05D005658 1.8e-72 276.6 236 63.1
Manes.14G016000 Manihot esculenta HOM05D004713 ORTHO05D005658 1.8e-72 276.6 229 62.0
Gohir.D02G184350 Gossypium hirsutum HOM05D004713 ORTHO05D005658 2.4e-72 276.2 227 61.7
Gorai.005G206600 Gossypium raimondii HOM05D004713 ORTHO05D005658 2.4e-72 276.2 227 61.7
Medtr2g089510 Medicago truncatula HOM05D004713 ORTHO05D005658 4.0e-72 275.4 229 62.9
Zm00001eb204410 Zea mays HOM05D004713 ORTHO05D005658 4.0e-72 275.4 235 63.0
ATR1132G116 Amborella trichopoda HOM05D004713 ORTHO05D005658 5.2e-72 275.0 226 61.1
Gorai.005G206500 Gossypium raimondii HOM05D004713 ORTHO05D005658 5.2e-72 275.0 227 61.7
TPR.G18047 Trifolium pratense HOM05D004713 ORTHO05D005658 5.2e-72 275.0 230 62.2
Gohir.D02G184300 Gossypium hirsutum HOM05D004713 ORTHO05D005658 6.9e-72 274.6 227 61.7
arahy.Tifrunner.gnm1.ann1.F0UT86 Arachis hypogaea HOM05D004713 ORTHO05D005658 1.2e-71 273.9 231 61.5
AL6G49650 Arabidopsis lyrata HOM05D004713 ORTHO05D005658 2.0e-71 273.1 236 62.3
BcaC04g23984 Brassica carinata HOM05D004713 ORTHO05D005658 2.0e-71 273.1 237 61.2
C09p02650 Brassica napus HOM05D004713 ORTHO05D005658 2.0e-71 273.1 237 61.2
BolC9t53193H Brassica oleracea HOM05D004713 ORTHO05D005658 2.0e-71 273.1 237 61.2
PGR042G3467 Punica granatum HOM05D004713 ORTHO05D005658 2.0e-71 273.1 185 69.7
SGA_v2.0_scaffold49G18316 Striga asiatica HOM05D004713 ORTHO05D005658 2.0e-71 273.1 227 62.6
GSVIVG01000453001 Vitis vinifera HOM05D004713 ORTHO05D005658 2.0e-71 273.1 168 75.6
MD09G1098300 Malus domestica HOM05D004713 ORTHO05D005658 2.6e-71 272.7 235 61.3
unitig_85.g27301 Utricularia gibba HOM05D004713 ORTHO05D005658 2.6e-71 272.7 233 60.9
Os07g0556200 Oryza sativa ssp. japonica HOM05D004713 ORTHO05D005658 3.4e-71 272.3 233 61.8
Eucgr.A01769 Eucalyptus grandis HOM05D004713 ORTHO05D005658 4.4e-71 271.9 232 61.6
MBI18_g36116_MAGBIO Magnolia biondii HOM05D004713 ORTHO05D005658 5.8e-71 271.6 229 60.3
Cc05_g05920 Coffea canephora HOM05D004713 ORTHO05D005658 1.3e-70 270.4 233 60.1
Zm00001eb238370 Zea mays HOM05D004713 ORTHO05D005658 1.3e-70 270.4 233 62.2
Cpa.g.sc34.64 Carica papaya HOM05D004713 ORTHO05D005658 2.2e-70 269.6 230 60.9
HPP92_001796 Vanilla planifolia HOM05D004713 ORTHO05D005658 3.8e-70 268.9 234 59.4
AT4G03280 Arabidopsis thaliana HOM05D004713 ORTHO05D005658 6.4e-70 268.1 235 58.3
A03p30490 Brassica napus HOM05D004713 ORTHO05D005658 6.4e-70 268.1 233 59.2
C03p36910 Brassica napus HOM05D004713 ORTHO05D005658 6.4e-70 268.1 233 59.2
CARHR251730 Cardamine hirsuta HOM05D004713 ORTHO05D005658 6.4e-70 268.1 235 60.0
Thhalv10028941m.g Eutrema salsugineum HOM05D004713 ORTHO05D005658 1.4e-69 266.9 232 61.6
FAN14G2217 Fragaria x ananassa HOM05D004713 ORTHO05D005658 1.4e-69 266.9 261 54.8
Sp6g03320 Schrenkiella parvula HOM05D004713 ORTHO05D005658 1.9e-69 266.5 232 60.8
BcaC01g06693 Brassica carinata HOM05D004713 ORTHO05D005658 2.4e-69 266.2 233 58.8
Duzib052G0720 Durio zibethinus HOM05D004713 ORTHO05D005658 2.4e-69 266.2 189 67.7
BolC3t15998H Brassica oleracea HOM05D004713 ORTHO05D005658 3.2e-69 265.8 233 58.8
BcaB01g01960 Brassica carinata HOM05D004713 ORTHO05D005658 4.2e-69 265.4 228 59.2
BraA03t12231Z Brassica rapa HOM05D004713 ORTHO05D005658 5.4e-69 265.0 233 58.4
A09p02620 Brassica napus HOM05D004713 ORTHO05D005658 2.7e-68 262.7 237 59.1
BraA09t35905Z Brassica rapa HOM05D004713 ORTHO05D005658 2.7e-68 262.7 237 59.1
Actinidia12471 Actinidia chinensis HOM05D004713 ORTHO05D005658 3.5e-68 262.3 226 59.3
Actinidia18739 Actinidia chinensis HOM05D004713 ORTHO05D005658 4.6e-68 261.9 183 68.3
BcaB01g02517 Brassica carinata HOM05D004713 ORTHO05D005658 1.0e-67 260.8 235 59.1
EL10Ac9g20726 Beta vulgaris HOM05D004713 ORTHO05D005658 1.5e-66 256.9 230 60.0
Cre11.g467689 Chlamydomonas reinhardtii HOM05D004713 ORTHO05D005658 8.4e-62 241.1 200 61.0
CDE01G0070 Ceratophyllum demersum HOM05D004713 ORTHO05D005658 3.5e-60 235.7 227 55.5
ECA236G1690 Erigeron canadensis HOM05D004713 ORTHO05D005658 1.8e-59 233.4 187 61.0
Eucgr.F01067 Eucalyptus grandis HOM05D004713 ORTHO05D005658 1.8e-59 233.4 195 62.1
HanXRQChr15g0494521 Helianthus annuus HOM05D004713 ORTHO05D005658 5.1e-59 231.9 169 65.1
PRCOL_00002197 Prasinoderma coloniale HOM05D004713 ORTHO05D005658 1.1e-58 230.7 196 57.7
FAN09G3163 Fragaria x ananassa HOM05D004713 ORTHO05D005658 1.9e-58 229.9 198 60.6
Lsat_1_v5_gn_7_105940 Lactuca sativa HOM05D004713 ORTHO05D005658 2.5e-58 229.6 195 57.9
MELO3C018775.2 Cucumis melo HOM05D004713 ORTHO05D005658 7.4e-58 228.0 198 59.6
Ca_01549_v3 Cicer arietinum L. HOM05D004713 ORTHO05D005658 7.4e-50 201.4 179 59.2
Aqoxy1G03926 Aquilegia oxysepala HOM05D004713 ORTHO05D005658 7.6e-47 191.4 119 72.3
Oeu006770.1 Olea europaea HOM05D004713 ORTHO05D005658 7.6e-39 164.9 136 61.0
CDE12G0380 Ceratophyllum demersum HOM05D004713 ORTHO05D005658 9.1e-32 141.4 145 56.6
unitig_699.g19605 Utricularia gibba HOM05D004713 ORTHO05D005658 4.2e-29 132.5 125 55.2
Actinidia25411 Actinidia chinensis HOM05D004713 ORTHO05D005658 1.1e-24 117.9 131 52.7
MD10G1189200 Malus domestica HOM05D004713 ORTHO05D005658 1.0e-14 84.7 48 79.2
RcHm_v2.0_Chr1g0330511 Rosa chinensis HOM05D004713 ORTHO05D005658 2.6e-10 70.1 98 46.9
SMO271G0135 Selaginella moellendorffii HOM05D014246 ORTHO05D017314 3.7e-09 66.2 69 42.0
COL.COLO4_06040 Corchorus olitorius HOM05D004713 ORTHO05D005658 4.8e-09 65.9 92 43.5
Haze_26739 Corylus avellana HOM05D002681 ORTHO05D003372 5.3e-08 62.4 59 45.8
Lalb_Chr22g0356281 Lupinus albus HOM05D004713 ORTHO05D005658 7.0e-08 62.0 89 46.1
MCO16G348 Micromonas commoda HOM05D002681 ORTHO05D003372 5.9e-07 58.9 57 47.4
Pp3c16_12490 Physcomitrium patens HOM05D014246 ORTHO05D017314 5.9e-07 58.9 44 52.3
Pp3c5_14970 Physcomitrium patens HOM05D014246 ORTHO05D017314 7.7e-07 58.5 45 51.1
Rhsim08G0039000 Rhododendron simsii HOM05D002681 ORTHO05D000343 7.7e-07 58.5 59 45.8
SMO117G0364 Selaginella moellendorffii HOM05D002681 ORTHO05D003372 7.7e-07 58.5 59 45.8
Cre12.g557350 Chlamydomonas reinhardtii HOM05D014246 ORTHO05D017314 1.0e-06 58.2 78 37.2
PRCOL_00005794 Prasinoderma coloniale HOM05D002681 ORTHO05D003372 1.7e-06 57.4 79 35.4
SEGI_20372 Sequoiadendron giganteum HOM05D014246 ORTHO05D017314 2.9e-06 56.6 45 44.4
CBR_g19567 Chara braunii HOM05D002681 ORTHO05D003372 3.8e-06 56.2 56 42.9
Cc07_g01320 Coffea canephora HOM05D002681 ORTHO05D003372 5.0e-06 55.8 57 42.1
Pp3c12_2830 Physcomitrium patens HOM05D002681 ORTHO05D003372 5.0e-06 55.8 73 38.4
Cfa023608 Carpinus fangiana HOM05D002681 ORTHO05D003372 8.5e-06 55.1 58 50.0
SEGI_23673 Sequoiadendron giganteum HOM05D002681 ORTHO05D003372 8.5e-06 55.1 73 38.4
unitig_749.g13332 Utricularia gibba HOM05D002681 ORTHO05D003372 8.5e-06 55.1 56 42.9


User provided reference genes

Program Settings