Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c3_32740 Physcomitrium patens HOM05D005837 ORTHO05D007594 6.8e-182 640.6 335 100.0
SMO169G0194 Selaginella moellendorffii HOM05D005837 ORTHO05D007594 2.4e-102 376.3 305 65.2
MSTRG.15711 Avicennia marina HOM05D005837 ORTHO05D007594 1.5e-99 367.1 304 64.5
Prupe.6G187000 Prunus persica HOM05D005837 ORTHO05D007594 5.5e-99 365.2 313 63.6
Duzib264G0353 Durio zibethinus HOM05D005837 ORTHO05D007594 1.2e-98 364.0 304 64.1
Eucgr.H04785 Eucalyptus grandis HOM05D005837 ORTHO05D007594 1.2e-98 364.0 304 63.8
MD01G1029800 Malus domestica HOM05D005837 ORTHO05D007594 2.8e-98 362.8 304 63.8
TWI77G0214 Tripterygium wilfordii HOM05D005837 ORTHO05D007594 3.6e-98 362.5 304 63.8
Gohir.D11G221614 Gossypium hirsutum HOM05D005837 ORTHO05D007594 6.1e-98 361.7 304 63.5
Gorai.007G238700 Gossypium raimondii HOM05D005837 ORTHO05D007594 1.4e-97 360.5 304 63.2
Thecc.01G101500 Theobroma cacao HOM05D005837 ORTHO05D007594 1.4e-97 360.5 304 63.5
Duzib147G0987 Durio zibethinus HOM05D005837 ORTHO05D007594 2.3e-97 359.8 308 63.0
MD15G1324100 Malus domestica HOM05D005837 ORTHO05D007594 3.0e-97 359.4 304 63.8
SGA_v2.0_scaffold34G13592 Striga asiatica HOM05D005837 ORTHO05D007594 3.0e-97 359.4 301 63.8
BraA09t36542Z Brassica rapa HOM05D005837 ORTHO05D007594 5.2e-97 358.6 301 63.8
Migut.L00122 Erythranthe guttata HOM05D005837 ORTHO05D007594 5.2e-97 358.6 319 60.8
PGR102G0026 Punica granatum HOM05D005837 ORTHO05D007594 6.8e-97 358.2 304 62.5
TWI53G1711 Tripterygium wilfordii HOM05D005837 ORTHO05D007594 6.8e-97 358.2 304 63.5
Gohir.A11G201400 Gossypium hirsutum HOM05D005837 ORTHO05D007594 8.8e-97 357.8 304 62.8
Potri.005G075600 Populus trichocarpa HOM05D005837 ORTHO05D007594 2.0e-96 356.7 304 62.8
CANSAT01G1018 Cannabis sativa HOM05D005837 ORTHO05D007594 2.6e-96 356.3 301 64.1
Carub.0008s2584 Capsella rubella HOM05D005837 ORTHO05D007594 3.4e-96 355.9 301 64.1
Gohir.D11G055600 Gossypium hirsutum HOM05D005837 ORTHO05D007594 4.4e-96 355.5 304 62.5
RcHm_v2.0_Chr2g0113501 Rosa chinensis HOM05D005837 ORTHO05D007594 5.7e-96 355.1 315 61.3
GSVIVG01002467001 Vitis vinifera HOM05D005837 ORTHO05D007594 5.7e-96 355.1 308 62.0
BcaC04g23271 Brassica carinata HOM05D005837 ORTHO05D007594 7.5e-96 354.8 302 63.9
C09p10350 Brassica napus HOM05D005837 ORTHO05D007594 7.5e-96 354.8 302 63.9
SalBow5G3973 Salvia bowleyana HOM05D005837 ORTHO05D007594 7.5e-96 354.8 304 61.5
SalBow5G4805 Salvia bowleyana HOM05D005837 ORTHO05D007594 7.5e-96 354.8 304 61.5
BraA06t26113Z Brassica rapa HOM05D005837 ORTHO05D007594 9.8e-96 354.4 301 62.8
Hma1.2p1_0047F.1_g027810 Hydrangea macrophylla HOM05D005837 ORTHO05D007594 9.8e-96 354.4 304 62.2
CSS0040315 Camellia sinensis var. sinensis HOM05D005837 ORTHO05D007594 1.3e-95 354.0 305 62.6
Lj4g0008298 Lotus japonicus HOM05D005837 ORTHO05D007594 1.3e-95 354.0 304 62.2
A06p31820 Brassica napus HOM05D005837 ORTHO05D007594 1.7e-95 353.6 301 62.8
BcaC01g02731 Brassica carinata HOM05D005837 ORTHO05D007594 2.2e-95 353.2 301 62.5
A09p08910 Brassica napus HOM05D005837 ORTHO05D007594 2.2e-95 353.2 301 62.8
C03p61190 Brassica napus HOM05D005837 ORTHO05D007594 2.2e-95 353.2 301 62.5
BolC3t18379H Brassica oleracea HOM05D005837 ORTHO05D007594 2.2e-95 353.2 301 62.5
COL.COLO4_09964 Corchorus olitorius HOM05D005837 ORTHO05D007594 2.2e-95 353.2 301 63.1
Thhalv10004589m.g Eutrema salsugineum HOM05D005837 ORTHO05D007594 2.2e-95 353.2 301 62.8
Gorai.007G060800 Gossypium raimondii HOM05D005837 ORTHO05D007594 2.2e-95 353.2 304 62.2
QL06p049517 Quercus lobata HOM05D005837 ORTHO05D007594 2.2e-95 353.2 301 62.1
Phvul.002G256000 Phaseolus vulgaris HOM05D005837 ORTHO05D007594 2.8e-95 352.8 304 61.8
VMungo0251G2060 Vigna mungo HOM05D005837 ORTHO05D007594 3.7e-95 352.4 304 61.2
CARHR293770 Cardamine hirsuta HOM05D005837 ORTHO05D007594 4.9e-95 352.1 301 63.1
Actinidia28865 Actinidia chinensis HOM05D005837 ORTHO05D007594 6.3e-95 351.7 308 61.4
Lalb_Chr07g0185181 Lupinus albus HOM05D005837 ORTHO05D007594 8.3e-95 351.3 304 61.8
Sabra05G0062100 Salix brachista HOM05D005837 ORTHO05D007594 8.3e-95 351.3 304 62.2
TPR.G6228 Trifolium pratense HOM05D005837 ORTHO05D007594 8.3e-95 351.3 304 61.8
Ah.03g143560 Amaranthus hybridus HOM05D005837 ORTHO05D007594 1.1e-94 350.9 308 61.4
BolC9t53935H Brassica oleracea HOM05D005837 ORTHO05D007594 1.1e-94 350.9 302 63.2
FvH4_1g20890 Fragaria vesca HOM05D005837 ORTHO05D007594 1.1e-94 350.9 311 61.4
unitig_32.g10697 Utricularia gibba HOM05D005837 ORTHO05D007594 1.1e-94 350.9 304 61.2
BcaB02g09852 Brassica carinata HOM05D005837 ORTHO05D007594 1.4e-94 350.5 301 62.8
BcaB02g09853 Brassica carinata HOM05D005837 ORTHO05D007594 1.4e-94 350.5 301 62.8
Sp2g28080 Schrenkiella parvula HOM05D005837 ORTHO05D007594 1.4e-94 350.5 301 62.8
Nn5g30122 Nelumbo nucifera HOM05D005837 ORTHO05D007594 4.1e-94 349.0 308 60.7
THA.LOC104798971 Tarenaya hassleriana HOM05D005837 ORTHO05D007594 4.1e-94 349.0 301 61.8
CiPaw.04G099500 Carya illinoinensis HOM05D005837 ORTHO05D007594 5.4e-94 348.6 308 60.7
Glyma.08G135800 Glycine max HOM05D005837 ORTHO05D007594 5.4e-94 348.6 304 61.5
Rhsim08G0010400 Rhododendron simsii HOM05D005837 ORTHO05D007594 5.4e-94 348.6 304 61.5
Ciclev10025805m.g Citrus clementina HOM05D005837 ORTHO05D007594 7.0e-94 348.2 301 61.1
DCAR_014225 Daucus carota HOM05D005837 ORTHO05D007594 7.0e-94 348.2 304 61.2
MBI05_g19355_MAGBIO Magnolia biondii HOM05D005837 ORTHO05D007594 7.0e-94 348.2 308 60.7
PSO447G0182 Papaver somniferum HOM05D005837 ORTHO05D007594 7.0e-94 348.2 306 61.4
arahy.Tifrunner.gnm1.ann1.UTAL3L Arachis hypogaea HOM05D005837 ORTHO05D007594 9.2e-94 347.8 301 62.1
HanXRQChr10g0305351 Helianthus annuus HOM05D005837 ORTHO05D007594 9.2e-94 347.8 301 61.5
Aa31LG1G16930 Aethionema arabicum HOM05D005837 ORTHO05D007594 1.2e-93 347.4 301 61.1
AL8G42500 Arabidopsis lyrata HOM05D005837 ORTHO05D007594 1.2e-93 347.4 301 62.8
Medtr8g090230 Medicago truncatula HOM05D005837 ORTHO05D007594 1.2e-93 347.4 304 60.2
Sopen05g030040 Solanum pennellii HOM05D005837 ORTHO05D007594 1.6e-93 347.1 301 62.1
Cfa002663 Carpinus fangiana HOM05D005837 ORTHO05D007594 2.0e-93 346.7 316 60.4
Solyc05g051590.3 Solanum lycopersicum HOM05D005837 ORTHO05D007594 2.0e-93 346.7 301 61.8
TAR376G0564 Trochodendron aralioides HOM05D005837 ORTHO05D007594 2.0e-93 346.7 308 60.4
Aqoxy5G01893 Aquilegia oxysepala HOM05D005837 ORTHO05D007594 2.7e-93 346.3 308 59.7
BcaB04g20002 Brassica carinata HOM05D005837 ORTHO05D007594 2.7e-93 346.3 301 62.1
Atru.chr4.64 Acer truncatum HOM05D005837 ORTHO05D007594 3.5e-93 345.9 316 58.9
PGSC0003DMG400007222 Solanum tuberosum HOM05D005837 ORTHO05D007594 3.5e-93 345.9 301 61.8
HPP92_016352 Vanilla planifolia HOM05D005837 ORTHO05D007594 3.5e-93 345.9 303 60.1
MELO3C007756.2 Cucumis melo HOM05D005837 ORTHO05D007594 4.5e-93 345.5 301 61.8
PSO210G6484 Papaver somniferum HOM05D005837 ORTHO05D007594 5.9e-93 345.1 306 60.8
AT5G65000 Arabidopsis thaliana HOM05D005837 ORTHO05D007594 1.3e-92 344.0 301 62.1
Gohir.A11G052200 Gossypium hirsutum HOM05D005837 ORTHO05D007594 1.7e-92 343.6 304 60.9
Sc16g0005040 Simmondsia chinensis HOM05D005837 ORTHO05D007594 2.3e-92 343.2 308 60.1
Ca_17737_v3 Cicer arietinum L. HOM05D005837 ORTHO05D007594 2.9e-92 342.8 304 59.9
CSS0022010 Camellia sinensis var. sinensis HOM05D005837 ORTHO05D007594 4.3e-91 339.0 304 60.9
FAN28G0473 Fragaria x ananassa HOM05D005837 ORTHO05D007594 9.5e-91 337.8 308 60.7
EL10Ac6g15104 Beta vulgaris HOM05D005837 ORTHO05D007594 1.6e-90 337.0 305 60.7
HanXRQChr09g0260241 Helianthus annuus HOM05D005837 ORTHO05D007594 2.8e-90 336.3 301 59.5
ATR0118G022 Amborella trichopoda HOM05D005837 ORTHO05D007594 6.1e-90 335.1 306 58.5
Sed0019406 Sechium edule HOM05D005837 ORTHO05D007594 1.8e-89 333.6 317 59.0
FAN23G0829 Fragaria x ananassa HOM05D005837 ORTHO05D007594 5.2e-89 332.0 348 54.3
ClCG01G018760 Citrullus lanatus HOM05D005837 ORTHO05D007594 1.2e-88 330.9 301 61.8
SEGI_29496 Sequoiadendron giganteum HOM05D005837 ORTHO05D007594 4.4e-88 328.9 301 59.1
FAN26G1738 Fragaria x ananassa HOM05D005837 ORTHO05D007594 7.5e-88 328.2 359 52.9
CsaV3_6G045430 Cucumis sativus L. HOM05D005837 ORTHO05D007594 1.7e-87 327.0 284 62.7
ECA232G4987 Erigeron canadensis HOM05D005837 ORTHO05D007594 1.1e-86 324.3 309 57.3
Zm00001eb244760 Zea mays HOM05D005837 ORTHO05D007594 1.1e-86 324.3 310 57.4
Oeu053549.4 Olea europaea HOM05D005837 ORTHO05D007594 3.2e-86 322.8 301 57.8
Nitab4.5_0000715g0030 Nicotiana tabacum HOM05D005837 ORTHO05D007594 2.0e-85 320.1 301 57.5
Manes.12G134900 Manihot esculenta HOM05D005837 ORTHO05D007594 5.9e-85 318.5 272 62.5
Peaxi162Scf00295g01018 Petunia axillaris HOM05D005837 ORTHO05D007594 1.1e-83 314.3 301 57.1
Lsat_1_v5_gn_4_141261 Lactuca sativa HOM05D005837 ORTHO05D007594 5.6e-83 312.0 286 59.4
Hund16285 Selenicereus undatus HOM05D005837 ORTHO05D007594 7.3e-83 311.6 303 57.1
Mapoly0120s0005 Marchantia polymorpha HOM05D005837 ORTHO05D007594 2.8e-82 309.7 251 66.1
SHI29446 Sapria himalayana HOM05D005837 ORTHO05D007594 3.6e-82 309.3 304 54.6
Nitab4.5_0006967g0030 Nicotiana tabacum HOM05D005837 ORTHO05D007594 1.4e-81 307.4 301 56.8
Haze_24932 Corylus avellana HOM05D005837 ORTHO05D007594 4.0e-81 305.8 390 49.0
AUR62002009 Chenopodium quinoa HOM05D005837 ORTHO05D007594 6.8e-81 305.1 292 57.5
Actinidia28231 Actinidia chinensis HOM05D005837 ORTHO05D007594 1.2e-80 304.3 270 61.5
AUR62003793 Chenopodium quinoa HOM05D005837 ORTHO05D007594 2.2e-79 300.1 305 55.7
Lj4A891G48 Lonicera japonica HOM05D005837 ORTHO05D007594 2.9e-79 299.7 249 63.1
Cc07_g15220 Coffea canephora HOM05D005837 ORTHO05D007594 5.4e-78 295.4 250 64.0
FAN19G3104 Fragaria x ananassa HOM05D005837 ORTHO05D007594 1.6e-74 283.9 257 59.9
CBR_g39403 Chara braunii HOM05D005837 ORTHO05D007594 3.1e-73 279.6 305 52.1
Zm00001eb182830 Zea mays HOM05D005837 ORTHO05D007594 3.7e-71 272.7 308 51.0
Potri.007G092800 Populus trichocarpa HOM05D005837 ORTHO05D007594 4.7e-66 255.8 250 56.0
Psat7g054880 Pisum sativum HOM05D005837 ORTHO05D007594 8.9e-65 251.5 233 57.1
Dinv13188 Davidia involucrata HOM05D005837 ORTHO05D007594 3.4e-64 249.6 226 59.7
Dinv21909 Davidia involucrata HOM05D005837 ORTHO05D007594 9.9e-64 248.1 230 57.4
AagrBONN_evm.TU.Sc2ySwM_117.3229 Anthoceros agrestis HOM05D005837 ORTHO05D007594 1.2e-48 198.0 219 52.5
CDE10G0517 Ceratophyllum demersum HOM05D005837 ORTHO05D007594 4.0e-41 172.9 262 40.8
Oeu002173.1 Olea europaea HOM05D005837 ORTHO05D007594 4.5e-40 169.5 301 37.5
MCO05G725 Micromonas commoda HOM05D005837 ORTHO05D007594 3.3e-35 153.3 324 37.0
vmacro18603 Vaccinium macrocarpon HOM05D005837 ORTHO05D007594 4.0e-33 146.4 140 57.1
RcHm_v2.0_Chr3g0453281 Rosa chinensis HOM05D005837 ORTHO05D007594 3.8e-31 139.8 195 44.1
RcHm_v2.0_Chr3g0467111 Rosa chinensis HOM05D005837 ORTHO05D007594 2.3e-28 130.6 158 51.3
Os02g0573300 Oryza sativa ssp. japonica HOM05D005837 ORTHO05D007594 6.7e-28 129.0 119 58.8
CAN.G151.30 Capsicum annuum HOM05D005837 ORTHO05D007594 8.5e-23 112.1 89 65.2
MBI10_g33306_MAGBIO Magnolia biondii HOM05D000934 ORTHO05D000746 3.0e-20 103.6 119 47.9
vmacro18602 Vaccinium macrocarpon HOM05D005837 ORTHO05D024186 1.9e-19 100.9 76 64.5
MBI10_g27985_MAGBIO Magnolia biondii HOM05D000934 ORTHO05D000746 6.5e-15 85.9 115 42.6
Haze_26763 Corylus avellana HOM05D001098 ORTHO05D034890 1.9e-14 84.3 349 26.1
Haze_26352 Corylus avellana HOM05D001098 ORTHO05D034890 2.5e-14 84.0 279 25.1
CSS0035199 Camellia sinensis var. sinensis HOM05D001098 ORTHO05D002527 7.4e-11 72.4 318 25.5
Cc07_g15210 Coffea canephora HOM05D005837 ORTHO05D024186 2.2e-10 70.9 56 60.7
SEGI_11233 Sequoiadendron giganteum HOM05D001098 ORTHO05D002527 2.2e-10 70.9 323 24.5
Oeu012219.1 Olea europaea HOM05D001098 ORTHO05D002527 2.4e-09 67.4 300 24.0
Haze_10071 Corylus avellana HOM05D001098 ORTHO05D002527 7.0e-09 65.9 293 24.9
GSVIVG01023864001 Vitis vinifera HOM05D001098 ORTHO05D002527 7.0e-09 65.9 302 25.8
Potri.016G113200 Populus trichocarpa HOM05D001098 ORTHO05D002527 1.5e-08 64.7 293 25.3
Aqoxy2G01309 Aquilegia oxysepala HOM05D001098 ORTHO05D002527 5.9e-08 62.8 294 24.5
Aqoxy6G01547 Aquilegia oxysepala HOM05D001098 ORTHO05D002527 5.9e-08 62.8 294 24.5
SMO118G0063 Selaginella moellendorffii HOM05D001098 ORTHO05D002527 5.9e-08 62.8 289 24.9
Oeu050440.1 Olea europaea HOM05D001098 ORTHO05D002527 2.9e-07 60.5 311 24.1
Aqoxy3G04159 Aquilegia oxysepala HOM05D001098 ORTHO05D002527 6.5e-07 59.3 295 23.7
QL06p014336 Quercus lobata HOM05D001098 ORTHO05D002527 1.9e-06 57.8 315 24.4


User provided reference genes

Program Settings