Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c3_28000 Physcomitrium patens HOM05D006787 ORTHO05D008366 6.5e-236 820.5 454 100.0
AL4G27180 Arabidopsis lyrata HOM05D006787 ORTHO05D008366 1.6e-77 294.3 446 39.7
AT2G31890 Arabidopsis thaliana HOM05D006787 ORTHO05D008366 1.6e-77 294.3 446 42.6
Carub.0004s1319 Capsella rubella HOM05D006787 ORTHO05D008366 6.2e-77 292.4 446 39.5
THA.LOC104800940 Tarenaya hassleriana HOM05D006787 ORTHO05D008366 1.1e-76 291.6 435 39.8
CARHR125600 Cardamine hirsuta HOM05D006787 ORTHO05D008366 8.9e-76 288.5 446 38.1
Sp4g14240 Schrenkiella parvula HOM05D006787 ORTHO05D008366 1.2e-75 288.1 446 38.6
BolC3t14481H Brassica oleracea HOM05D006787 ORTHO05D008366 1.5e-75 287.7 441 39.7
CANSAT56G3581 Cannabis sativa HOM05D006787 ORTHO05D008366 4.4e-75 286.2 431 39.9
BraA03t11058Z Brassica rapa HOM05D000200 ORTHO05D000262 1.3e-74 284.6 441 39.5
GSVIVG01038263001 Vitis vinifera HOM05D006787 ORTHO05D008366 1.3e-74 284.6 427 45.2
Thhalv10016356m.g Eutrema salsugineum HOM05D006787 ORTHO05D008366 4.9e-74 282.7 446 38.6
Aa31LG5G5150 Aethionema arabicum HOM05D006787 ORTHO05D008366 6.4e-74 282.3 442 39.1
SGA_v2.0_scaffold25G10734 Striga asiatica HOM05D006787 ORTHO05D008366 2.4e-73 280.4 457 44.2
Dinv33252 Davidia involucrata HOM05D006787 ORTHO05D008366 5.4e-73 279.3 439 39.2
ECA248G2491 Erigeron canadensis HOM05D006787 ORTHO05D008366 5.4e-73 279.3 430 45.1
EL10Ac3g06180 Beta vulgaris HOM05D006787 ORTHO05D008366 1.6e-72 277.7 455 36.9
Manes.01G009700 Manihot esculenta HOM05D006787 ORTHO05D008366 2.1e-72 277.3 453 37.7
AUR62002496 Chenopodium quinoa HOM05D006787 ORTHO05D008366 2.7e-72 276.9 453 37.3
AUR62023690 Chenopodium quinoa HOM05D006787 ORTHO05D008366 3.5e-72 276.6 453 37.1
CSS0000740 Camellia sinensis var. sinensis HOM05D006787 ORTHO05D008366 6.0e-72 275.8 445 43.6
Nn7g37422 Nelumbo nucifera HOM05D006787 ORTHO05D008366 7.8e-72 275.4 455 37.6
MSTRG.11562 Avicennia marina HOM05D006787 ORTHO05D008366 1.0e-71 275.0 451 41.5
Sopen12g008290 Solanum pennellii HOM05D006787 ORTHO05D008366 1.3e-71 274.6 447 43.4
Solyc12g017510.2 Solanum lycopersicum HOM05D006787 ORTHO05D008366 1.7e-71 274.2 447 43.6
Haze_11111 Corylus avellana HOM05D006787 ORTHO05D008366 2.3e-71 273.9 452 41.2
Prupe.6G118500 Prunus persica HOM05D006787 ORTHO05D008366 2.3e-71 273.9 452 41.8
Eucgr.H00246 Eucalyptus grandis HOM05D006787 ORTHO05D008366 3.0e-71 273.5 435 40.0
HanXRQChr12g0374641 Helianthus annuus HOM05D006787 ORTHO05D008366 3.0e-71 273.5 411 46.5
Lju124A5G21 Lonicera japonica HOM05D006787 ORTHO05D008366 3.0e-71 273.5 453 38.4
ClCG06G009900 Citrullus lanatus HOM05D006787 ORTHO05D008366 3.9e-71 273.1 462 37.9
Lsat_1_v5_gn_6_92560 Lactuca sativa HOM05D006787 ORTHO05D008366 3.9e-71 273.1 440 37.3
Actinidia18386 Actinidia chinensis HOM05D006787 ORTHO05D003440 5.1e-71 272.7 460 38.0
TWI63G1373 Tripterygium wilfordii HOM05D006787 ORTHO05D008366 5.1e-71 272.7 446 38.3
Hma1.2p1_0000F.1_g000320 Hydrangea macrophylla HOM05D006787 ORTHO05D008366 6.6e-71 272.3 448 37.9
Migut.O00275 Erythranthe guttata HOM05D006787 ORTHO05D008366 8.7e-71 271.9 459 42.7
Gohir.A06G175100 Gossypium hirsutum HOM05D006787 ORTHO05D008366 8.7e-71 271.9 451 41.9
Hund22687 Selenicereus undatus HOM05D006787 ORTHO05D008366 1.1e-70 271.6 445 37.8
PSO357G0106 Papaver somniferum HOM05D006787 ORTHO05D008366 1.5e-70 271.2 464 43.3
TAR636G3644 Trochodendron aralioides HOM05D006787 ORTHO05D008366 1.9e-70 270.8 455 40.4
Thecc.05G000800 Theobroma cacao HOM05D006787 ORTHO05D008366 3.3e-70 270.0 453 37.1
Sabra17G0005700 Salix brachista HOM05D006787 ORTHO05D008366 2.1e-69 267.3 455 42.2
CAN.G207.7 Capsicum annuum HOM05D006787 ORTHO05D008366 3.6e-69 266.5 447 40.7
FAN26G1372 Fragaria x ananassa HOM05D006787 ORTHO05D008366 1.1e-68 265.0 452 41.2
MBI10_g27212_MAGBIO Magnolia biondii HOM05D006787 ORTHO05D008366 1.4e-68 264.6 448 37.7
Nitab4.5_0006083g0010 Nicotiana tabacum HOM05D006787 ORTHO05D008366 2.0e-67 260.8 460 41.3
vmacro00728 Vaccinium macrocarpon HOM05D006787 ORTHO05D008366 2.6e-67 260.4 464 40.1
Nitab4.5_0005148g0010 Nicotiana tabacum HOM05D006787 ORTHO05D008366 3.4e-67 260.0 460 41.7
Aqoxy4G00084 Aquilegia oxysepala HOM05D006787 ORTHO05D008366 4.4e-67 259.6 450 35.8
Lalb_Chr10g0097341 Lupinus albus HOM05D006787 ORTHO05D008366 4.4e-67 259.6 450 41.6
Gorai.010G216300 Gossypium raimondii HOM05D006787 ORTHO05D008366 5.8e-67 259.2 455 40.7
Os03g0425000 Oryza sativa ssp. japonica HOM05D006787 ORTHO05D008366 9.9e-67 258.5 431 37.4
Cpa.g.sc9.243 Carica papaya HOM05D006787 ORTHO05D008366 3.8e-66 256.5 441 37.4
SalBow5G4178 Salvia bowleyana HOM05D006787 ORTHO05D008366 3.8e-66 256.5 440 42.3
Cfa008529 Carpinus fangiana HOM05D006787 ORTHO05D008366 4.9e-66 256.1 433 40.9
Ca_25786_v3 Cicer arietinum L. HOM05D006787 ORTHO05D008366 4.9e-66 256.1 447 36.9
QL10p065815 Quercus lobata HOM05D006787 ORTHO05D008366 8.4e-66 255.4 443 36.8
Lj3g0015930 Lotus japonicus HOM05D006787 ORTHO05D008366 3.2e-65 253.4 456 35.7
Mapoly0069s0042 Marchantia polymorpha HOM05D006787 ORTHO05D008366 3.2e-65 253.4 460 34.6
Mapoly0276s0001 Marchantia polymorpha HOM05D006787 ORTHO05D008366 3.2e-65 253.4 460 34.6
QL10p064688 Quercus lobata HOM05D006787 ORTHO05D008366 4.2e-65 253.1 443 36.1
Duzib168G0144 Durio zibethinus HOM05D006787 ORTHO05D008366 1.6e-64 251.1 457 36.5
MD11G1156300 Malus domestica HOM05D006787 ORTHO05D008366 2.7e-64 250.4 448 40.4
Atru.chr3.1966 Acer truncatum HOM05D006787 ORTHO05D008366 3.5e-64 250.0 438 41.3
PGSC0003DMG400006459 Solanum tuberosum HOM05D006787 ORTHO05D008366 3.5e-64 250.0 447 41.8
Gohir.D06G185000 Gossypium hirsutum HOM05D006787 ORTHO05D008366 7.8e-64 248.8 455 36.0
Peaxi162Scf00057g01911 Petunia axillaris HOM05D006787 ORTHO05D008366 1.0e-63 248.4 458 40.6
CiPaw.02G125400 Carya illinoinensis HOM05D006787 ORTHO05D008366 1.7e-63 247.7 439 36.0
MELO3C008513.2 Cucumis melo HOM05D006787 ORTHO05D008366 1.7e-63 247.7 452 40.3
Ciclev10019183m.g Citrus clementina HOM05D006787 ORTHO05D008366 5.1e-63 246.1 455 39.3
CsaV3_2G011300 Cucumis sativus L. HOM05D006787 ORTHO05D008366 5.1e-63 246.1 455 39.3
FvH4_1g00100 Fragaria vesca HOM05D006787 ORTHO05D008366 6.6e-63 245.7 452 39.8
Glyma.03G015700 Glycine max HOM05D006787 ORTHO05D008366 8.7e-63 245.4 445 35.3
COL.COLO4_07294 Corchorus olitorius HOM05D006787 ORTHO05D008366 1.1e-62 245.0 459 36.4
Potri.017G001600 Populus trichocarpa HOM05D006787 ORTHO05D008366 1.1e-62 245.0 455 35.2
Cc03_g16180 Coffea canephora HOM05D006787 ORTHO05D008366 1.5e-62 244.6 455 35.8
ATR0743G046 Amborella trichopoda HOM05D006787 ORTHO05D008366 2.5e-62 243.8 491 39.1
FAN28G0724 Fragaria x ananassa HOM05D006787 ORTHO05D008366 2.5e-62 243.8 462 39.4
RcHm_v2.0_Chr2g0084391 Rosa chinensis HOM05D006787 ORTHO05D008366 2.5e-62 243.8 475 38.5
arahy.Tifrunner.gnm1.ann1.RN5NMY Arachis hypogaea HOM05D006787 ORTHO05D008366 9.6e-62 241.9 450 38.7
Medtr8g432340 Medicago truncatula HOM05D006787 ORTHO05D008366 9.6e-62 241.9 436 36.0
PGR142G3161 Punica granatum HOM05D006787 ORTHO05D008366 9.6e-62 241.9 439 37.1
HPP92_011440 Vanilla planifolia HOM05D006787 ORTHO05D008366 9.6e-62 241.9 449 37.4
Oeu014980.1 Olea europaea HOM05D006787 ORTHO05D008366 1.3e-61 241.5 424 41.0
FAN23G2311 Fragaria x ananassa HOM05D006787 ORTHO05D008366 1.6e-61 241.1 462 39.4
Psat4g152520 Pisum sativum HOM05D006787 ORTHO05D008366 2.1e-61 240.7 461 36.7
arahy.Tifrunner.gnm1.ann1.M1INQM Arachis hypogaea HOM05D006787 ORTHO05D008366 3.6e-61 240.0 450 39.1
VMungo0331G0945 Vigna mungo HOM05D006787 ORTHO05D008366 6.2e-61 239.2 448 34.6
Glyma.07G076000 Glycine max HOM05D006787 ORTHO05D008366 1.8e-60 237.7 448 34.8
A03p17910 Brassica napus HOM05D006787 ORTHO05D008366 5.3e-60 236.1 398 38.2
C03p21010 Brassica napus HOM05D006787 ORTHO05D008366 9.0e-60 235.3 390 38.7
Phvul.010G093100 Phaseolus vulgaris HOM05D006787 ORTHO05D008366 1.5e-59 234.6 453 33.6
AagrBONN_evm.TU.Sc2ySwM_344.5468 Anthoceros agrestis HOM05D006787 ORTHO05D008366 2.6e-59 233.8 412 37.4
TPR.G1526 Trifolium pratense HOM05D006787 ORTHO05D008366 4.9e-58 229.6 471 35.2
Hma1.2p1_0000F.1_g000310 Hydrangea macrophylla HOM05D006787 ORTHO05D008366 5.4e-57 226.1 405 36.5
SEGI_12983 Sequoiadendron giganteum HOM05D006787 ORTHO05D008366 1.6e-56 224.6 465 34.8
Zm00001eb120920 Zea mays HOM05D006787 ORTHO05D008366 1.0e-55 221.9 391 36.3
Sc19g0002430 Simmondsia chinensis HOM05D006787 ORTHO05D008366 8.7e-55 218.8 448 36.8
TPR.G9807 Trifolium pratense HOM05D006787 ORTHO05D008366 1.5e-54 218.0 440 33.0
unitig_22.g5322 Utricularia gibba HOM05D006787 ORTHO05D008366 8.1e-53 212.2 364 38.5
COL.COLO4_16044 Corchorus olitorius HOM05D006787 ORTHO05D008366 2.0e-51 207.6 413 34.6
Sed0010252 Sechium edule HOM05D006787 ORTHO05D008366 1.6e-48 198.0 409 34.5
BcaB01g04009 Brassica carinata HOM05D006787 ORTHO05D008366 1.5e-38 164.9 207 43.0
AagrBONN_evm.TU.Sc2ySwM_344.5464 Anthoceros agrestis HOM05D006787 ORTHO05D008366 8.2e-29 132.5 154 47.4
SMO137G0272 Selaginella moellendorffii HOM05D006787 ORTHO05D008366 6.3e-21 106.3 145 41.4
CBR_g41140 Chara braunii HOM05D006787 ORTHO05D008366 5.2e-15 86.7 210 32.4
PRCOL_00001133 Prasinoderma coloniale HOM05D006787 ORTHO05D008366 1.2e-11 75.5 343 25.4
Cre09.g389541 Chlamydomonas reinhardtii HOM05D006787 ORTHO05D008366 6.5e-10 69.7 132 32.6
SMO137G0174 Selaginella moellendorffii HOM05D066076 ORTHO05D008366 8.5e-10 69.3 211 28.4
SMO137G0071 Selaginella moellendorffii HOM05D006787 ORTHO05D008366 1.9e-09 68.2 85 41.2
Cre10.g459350 Chlamydomonas reinhardtii HOM05D006787 ORTHO05D008366 3.6e-08 63.9 80 41.2
SMO137G0070 Selaginella moellendorffii HOM05D006787 ORTHO05D008366 3.6e-08 63.9 145 33.1
SMO134G0111 Selaginella moellendorffii HOM05D006787 ORTHO05D008366 2.3e-07 61.2 271 28.0
PRCOL_00005660 Prasinoderma coloniale HOM05D006787 ORTHO05D008366 2.6e-06 57.8 117 32.5


User provided reference genes

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