Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c3_280 Physcomitrium patens HOM05D006355 ORTHO05D008284 6.5e-157 557.4 288 100.0
HanXRQChr12g0354551 Helianthus annuus HOM05D006355 ORTHO05D008284 2.0e-49 200.3 295 42.0
TWI34G0237 Tripterygium wilfordii HOM05D006355 ORTHO05D008284 2.0e-49 200.3 302 42.7
CDE06G0893 Ceratophyllum demersum HOM05D006355 ORTHO05D008284 3.8e-48 196.1 321 40.5
PGR142G1993 Punica granatum HOM05D006355 ORTHO05D008284 6.5e-48 195.3 299 42.1
Nitab4.5_0002079g0060 Nicotiana tabacum HOM05D006355 ORTHO05D008284 1.1e-47 194.5 323 40.2
Aqoxy7G01135 Aquilegia oxysepala HOM05D006355 ORTHO05D008284 4.2e-47 192.6 315 41.0
DCAR_024718 Daucus carota HOM05D006355 ORTHO05D008284 5.5e-47 192.2 315 40.6
Hund08706 Selenicereus undatus HOM05D006355 ORTHO05D008284 5.5e-47 192.2 330 39.7
ECA234G3558 Erigeron canadensis HOM05D006355 ORTHO05D008284 2.1e-46 190.3 308 43.2
Lalb_Chr12g0199961 Lupinus albus HOM05D006355 ORTHO05D008284 2.1e-46 190.3 300 41.3
Sopen07g020150 Solanum pennellii HOM05D006355 ORTHO05D008284 2.1e-46 190.3 317 41.0
Gohir.D07G013200 Gossypium hirsutum HOM05D006355 ORTHO05D008284 2.7e-46 189.9 322 39.1
Solyc07g041020.3 Solanum lycopersicum HOM05D006355 ORTHO05D008284 3.6e-46 189.5 320 41.2
PGSC0003DMG400014101 Solanum tuberosum HOM05D006355 ORTHO05D008284 3.6e-46 189.5 318 40.9
arahy.Tifrunner.gnm1.ann1.I94R61 Arachis hypogaea HOM05D006355 ORTHO05D008284 4.7e-46 189.1 300 42.0
Lsat_1_v5_gn_5_143521 Lactuca sativa HOM05D006355 ORTHO05D008284 4.7e-46 189.1 290 41.4
Peaxi162Scf00494g00027 Petunia axillaris HOM05D006355 ORTHO05D008284 6.1e-46 188.7 323 38.7
Zm00001eb357030 Zea mays HOM05D006355 ORTHO05D008284 6.1e-46 188.7 304 42.4
ATR0051G027 Amborella trichopoda HOM05D006355 ORTHO05D008284 1.0e-45 188.0 319 40.8
Gorai.001G013900 Gossypium raimondii HOM05D006355 ORTHO05D008284 1.0e-45 188.0 322 38.8
Migut.L01533 Erythranthe guttata HOM05D006355 ORTHO05D008284 2.3e-45 186.8 320 39.7
vmacro17166 Vaccinium macrocarpon HOM05D006355 ORTHO05D008284 2.3e-45 186.8 309 39.5
AagrBONN_evm.TU.Sc2ySwM_228.3887 Anthoceros agrestis HOM05D006355 ORTHO05D008284 3.0e-45 186.4 165 57.6
AT2G19385 Arabidopsis thaliana HOM05D006355 ORTHO05D008284 4.0e-45 186.0 291 41.9
Carub.0003s3364 Capsella rubella HOM05D006355 ORTHO05D008284 4.0e-45 186.0 292 41.4
Gohir.A07G013400 Gossypium hirsutum HOM05D006355 ORTHO05D008284 8.8e-45 184.9 322 37.9
Lj4A288G20 Lonicera japonica HOM05D006355 ORTHO05D008284 1.2e-44 184.5 323 39.3
Nitab4.5_0002842g0040 Nicotiana tabacum HOM05D006355 ORTHO05D008284 1.2e-44 184.5 318 40.3
Os01g0583200 Oryza sativa ssp. japonica HOM05D006355 ORTHO05D008284 2.0e-44 183.7 314 37.9
Prupe.7G204300 Prunus persica HOM05D006355 ORTHO05D008284 2.6e-44 183.3 301 40.5
PSO832G0549 Papaver somniferum HOM05D006355 ORTHO05D008284 3.4e-44 183.0 297 41.1
CAN.G35.5 Capsicum annuum HOM05D006355 ORTHO05D008284 4.4e-44 182.6 322 39.1
C07p02840 Brassica napus HOM05D006355 ORTHO05D008284 5.7e-44 182.2 286 39.5
BolC7t40681H Brassica oleracea HOM05D006355 ORTHO05D008284 5.7e-44 182.2 286 39.5
Sp3g32760 Schrenkiella parvula HOM05D006355 ORTHO05D008284 5.7e-44 182.2 293 39.9
A07p01380 Brassica napus HOM05D006355 ORTHO05D008284 9.8e-44 181.4 286 39.9
GSVIVG01015151001 Vitis vinifera HOM05D006355 ORTHO05D008284 1.3e-43 181.0 286 40.6
Thhalv10022802m.g Eutrema salsugineum HOM05D006355 ORTHO05D008284 1.7e-43 180.6 292 40.8
BcaC06g36568 Brassica carinata HOM05D006355 ORTHO05D008284 2.2e-43 180.3 286 39.5
Psat4g016280 Pisum sativum HOM05D006355 ORTHO05D008284 2.2e-43 180.3 299 39.8
PSO063G0296 Papaver somniferum HOM05D006355 ORTHO05D008284 2.8e-43 179.9 297 40.7
SGA_v2.0_scaffold21G09447 Striga asiatica HOM05D006355 ORTHO05D008284 3.7e-43 179.5 306 39.5
Ciclev10008972m.g Citrus clementina HOM05D006355 ORTHO05D008284 4.8e-43 179.1 318 38.1
QL02p061767 Quercus lobata HOM05D006355 ORTHO05D008284 4.8e-43 179.1 321 38.6
RcHm_v2.0_Chr2g0094111 Rosa chinensis HOM05D006355 ORTHO05D008284 4.8e-43 179.1 310 40.0
Cfa003044 Carpinus fangiana HOM05D006355 ORTHO05D008284 6.3e-43 178.7 311 38.3
QL02p061794 Quercus lobata HOM05D006355 ORTHO05D008284 6.3e-43 178.7 321 38.6
Thecc.09G082800 Theobroma cacao HOM05D006355 ORTHO05D008284 6.3e-43 178.7 328 37.8
SalBow1G0189 Salvia bowleyana HOM05D006355 ORTHO05D008284 8.3e-43 178.3 321 37.7
TPR.G9437 Trifolium pratense HOM05D006355 ORTHO05D008284 8.3e-43 178.3 301 40.5
CiPaw.03G211000 Carya illinoinensis HOM05D006355 ORTHO05D008284 1.1e-42 177.9 320 39.7
Haze_25952 Corylus avellana HOM05D006355 ORTHO05D008284 1.1e-42 177.9 322 39.1
Rhsim05G0014000 Rhododendron simsii HOM05D006355 ORTHO05D008284 1.1e-42 177.9 331 37.5
Glyma.13G107200 Glycine max HOM05D006355 ORTHO05D008284 1.4e-42 177.6 310 38.1
FvH4_1g08060 Fragaria vesca HOM05D006355 ORTHO05D008284 1.8e-42 177.2 308 39.6
FAN19G0491 Fragaria x ananassa HOM05D006355 ORTHO05D008284 1.8e-42 177.2 308 39.6
Oeu010827.1 Olea europaea HOM05D006355 ORTHO05D008284 1.8e-42 177.2 305 39.3
BraA07t27933Z Brassica rapa HOM05D006355 ORTHO05D008284 2.4e-42 176.8 284 38.7
CARHR109830 Cardamine hirsuta HOM05D006355 ORTHO05D008284 2.4e-42 176.8 293 38.9
Ca_21303_v3 Cicer arietinum L. HOM05D006355 ORTHO05D008284 3.1e-42 176.4 316 38.3
Hma1.2p1_0672F.1_g200900 Hydrangea macrophylla HOM05D006355 ORTHO05D008284 3.1e-42 176.4 326 38.0
CANSAT56G1278 Cannabis sativa HOM05D006355 ORTHO05D008284 4.1e-42 176.0 314 40.8
CBR_g39727 Chara braunii HOM05D006355 ORTHO05D008284 4.1e-42 176.0 168 53.6
Sed0027351 Sechium edule HOM05D006355 ORTHO05D008284 4.1e-42 176.0 309 38.5
SEGI_15381 Sequoiadendron giganteum HOM05D006355 ORTHO05D008284 4.1e-42 176.0 296 38.9
Cc06_g11800 Coffea canephora HOM05D006355 ORTHO05D008284 5.4e-42 175.6 340 37.4
Glyma.17G052200 Glycine max HOM05D006355 ORTHO05D008284 5.4e-42 175.6 309 39.2
CANSAT56G3969 Cannabis sativa HOM05D006355 ORTHO05D008284 7.0e-42 175.3 314 41.7
ClCG11G001610 Citrullus lanatus HOM05D006355 ORTHO05D008284 7.0e-42 175.3 314 38.5
AL3G48940 Arabidopsis lyrata HOM05D006355 ORTHO05D008284 1.6e-41 174.1 292 39.4
Cpa.g.sc28.115 Carica papaya HOM05D006355 ORTHO05D008284 1.6e-41 174.1 324 38.0
BcaB03g16724 Brassica carinata HOM05D006355 ORTHO05D008284 2.0e-41 173.7 288 39.6
MELO3C004639.2 Cucumis melo HOM05D006355 ORTHO05D008284 2.0e-41 173.7 316 39.9
Lj4g0004716 Lotus japonicus HOM05D006355 ORTHO05D008284 2.7e-41 173.3 314 37.9
Mapoly0108s0017 Marchantia polymorpha HOM05D006355 ORTHO05D008284 2.7e-41 173.3 262 43.5
Medtr4g125720 Medicago truncatula HOM05D006355 ORTHO05D008284 4.5e-41 172.6 301 39.2
AUR62025162 Chenopodium quinoa HOM05D006355 ORTHO05D008284 7.7e-41 171.8 327 38.8
FAN23G1962 Fragaria x ananassa HOM05D006355 ORTHO05D008284 7.7e-41 171.8 308 39.0
CsaV3_2G001300 Cucumis sativus L. HOM05D006355 ORTHO05D008284 1.3e-40 171.0 318 39.0
FAN28G1606 Fragaria x ananassa HOM05D006355 ORTHO05D008284 1.7e-40 170.6 308 38.3
Phvul.003G133900 Phaseolus vulgaris HOM05D006355 ORTHO05D008284 2.2e-40 170.2 317 36.9
Manes.16G098900 Manihot esculenta HOM05D006355 ORTHO05D008284 2.9e-40 169.9 323 38.1
Aa31LG8G16390 Aethionema arabicum HOM05D006355 ORTHO05D008284 3.8e-40 169.5 293 39.9
Duzib168G2189 Durio zibethinus HOM05D006355 ORTHO05D008284 8.5e-40 168.3 266 42.1
AUR62029015 Chenopodium quinoa HOM05D006355 ORTHO05D008284 1.9e-39 167.2 332 38.9
Eucgr.C00847 Eucalyptus grandis HOM05D006355 ORTHO05D008284 1.9e-39 167.2 322 36.3
Potri.006G146200 Populus trichocarpa HOM05D006355 ORTHO05D008284 1.9e-39 167.2 322 37.9
Atru.chr7.1648 Acer truncatum HOM05D006355 ORTHO05D008284 3.2e-39 166.4 324 37.0
Actinidia25231 Actinidia chinensis HOM05D006355 ORTHO05D008284 1.2e-38 164.5 147 57.8
TAR413G0001 Trochodendron aralioides HOM05D006355 ORTHO05D008284 1.2e-38 164.5 325 36.0
FAN26G1509 Fragaria x ananassa HOM05D006355 ORTHO05D008284 1.6e-38 164.1 317 37.2
FAN26G2768 Fragaria x ananassa HOM05D006355 ORTHO05D008284 2.8e-38 163.3 319 34.8
Nn8g38760 Nelumbo nucifera HOM05D006355 ORTHO05D008284 2.3e-37 160.2 325 35.4
Nn8g41302 Nelumbo nucifera HOM05D006355 ORTHO05D008284 2.3e-37 160.2 325 35.4
Dinv36798 Davidia involucrata HOM05D006355 ORTHO05D008284 3.4e-36 156.4 196 45.9
SMO200G0211 Selaginella moellendorffii HOM05D006355 ORTHO05D008284 1.3e-35 154.5 288 35.1
Gohir.A05G032100 Gossypium hirsutum HOM05D006355 ORTHO05D008284 7.8e-33 145.2 307 36.5
MBI11_g07532_MAGBIO Magnolia biondii HOM05D006355 ORTHO05D008284 2.3e-32 143.7 328 34.8
Sc08g0008680 Simmondsia chinensis HOM05D006355 ORTHO05D008284 2.3e-32 143.7 323 35.0
Sabra06G0115400 Salix brachista HOM05D006355 ORTHO05D008284 2.9e-32 143.3 364 33.5
HPP92_009733 Vanilla planifolia HOM05D006355 ORTHO05D008284 2.5e-31 140.2 321 33.0
MD15G1212400 Malus domestica HOM05D006355 ORTHO05D008284 3.3e-31 139.8 308 36.0
arahy.Tifrunner.gnm1.ann1.2VE13Z Arachis hypogaea HOM05D006355 ORTHO05D008284 1.2e-30 137.9 301 35.9
EL10Ac8g19156 Beta vulgaris HOM05D006355 ORTHO05D008284 1.2e-30 137.9 320 34.4
PRCOL_00003845 Prasinoderma coloniale HOM05D006355 ORTHO05D008284 1.2e-30 137.9 136 50.0
MD02G1085300 Malus domestica HOM05D006355 ORTHO05D008284 1.0e-29 134.8 307 34.5
COL.COLO4_18155 Corchorus olitorius HOM05D006355 ORTHO05D008284 4.0e-29 132.9 325 32.6
MCO07G733 Micromonas commoda HOM05D006355 ORTHO05D008284 6.4e-27 125.6 142 46.5
AL3G48950 Arabidopsis lyrata HOM05D006355 ORTHO05D008284 3.2e-26 123.2 121 51.2
Carub.0003s3362 Capsella rubella HOM05D006355 ORTHO05D008284 3.5e-25 119.8 263 32.7
Cre17.g701050 Chlamydomonas reinhardtii HOM05D006355 ORTHO05D008284 2.3e-24 117.1 136 44.9
VMungo1215G0260 Vigna mungo HOM05D006355 ORTHO05D008284 8.6e-24 115.2 290 35.5
AT2G19380 Arabidopsis thaliana HOM05D006355 ORTHO05D011679 4.3e-23 112.8 342 28.7
SHI23456 Sapria himalayana HOM05D006355 ORTHO05D008284 1.5e-15 87.8 61 59.0
SHI30666 Sapria himalayana HOM05D006355 ORTHO05D008284 1.5e-15 87.8 61 59.0
SGA_v2.0_scaffold23G10049 Striga asiatica HOM05D006355 ORTHO05D008284 6.2e-14 82.4 122 41.0
unitig_8.g3528 Utricularia gibba HOM05D001583 ORTHO05D001900 7.5e-12 75.5 250 30.4
Migut.B00896 Erythranthe guttata HOM05D002142 ORTHO05D001189 7.3e-07 58.9 117 38.5


User provided reference genes

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