Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c3_25470 Physcomitrium patens HOM05D006539 ORTHO05D008694 9.7e-161 570.1 285 100.0
Pp3c12_19160 Physcomitrium patens HOM05D006539 ORTHO05D008694 4.9e-72 275.4 181 75.1
AagrBONN_evm.TU.Sc2ySwM_117.170 Anthoceros agrestis HOM05D006539 ORTHO05D008694 3.5e-54 216.1 156 65.4
Mapoly0088s0068 Marchantia polymorpha HOM05D006539 ORTHO05D008694 1.7e-48 197.2 174 53.4
Cc07_g03820 Coffea canephora HOM05D006539 ORTHO05D008694 2.9e-48 196.4 172 52.9
SEGI_40704 Sequoiadendron giganteum HOM05D006539 ORTHO05D008694 8.4e-48 194.9 153 60.1
arahy.Tifrunner.gnm1.ann1.YFBV2Q Arachis hypogaea HOM05D006539 ORTHO05D008694 3.2e-47 193.0 152 55.3
SMO228G0204 Selaginella moellendorffii HOM05D006539 ORTHO05D008694 4.2e-47 192.6 152 54.6
Sabra04G0067100 Salix brachista HOM05D006539 ORTHO05D008694 5.5e-47 192.2 168 53.0
TAR371G0397 Trochodendron aralioides HOM05D006539 ORTHO05D008694 5.5e-47 192.2 257 42.8
TAR371G0750 Trochodendron aralioides HOM05D006539 ORTHO05D008694 5.5e-47 192.2 257 42.8
Prupe.3G259900 Prunus persica HOM05D006539 ORTHO05D008694 7.1e-47 191.8 152 55.3
Aa31LG11G14170 Aethionema arabicum HOM05D006539 ORTHO05D008694 9.3e-47 191.4 176 52.3
Manes.02G050600 Manihot esculenta HOM05D006539 ORTHO05D008694 9.3e-47 191.4 180 48.9
Potri.004G122300 Populus trichocarpa HOM05D006539 ORTHO05D008694 2.1e-46 190.3 168 52.4
VMungo1383G3577 Vigna mungo HOM05D006539 ORTHO05D008694 2.1e-46 190.3 152 55.3
TPR.G33480 Trifolium pratense HOM05D006539 ORTHO05D008694 2.7e-46 189.9 193 48.2
Glyma.08G241400 Glycine max HOM05D006539 ORTHO05D008694 3.5e-46 189.5 152 54.6
Lalb_Chr10g0093241 Lupinus albus HOM05D006539 ORTHO05D008694 3.5e-46 189.5 159 55.3
Nn4g23332 Nelumbo nucifera HOM05D006539 ORTHO05D008694 3.5e-46 189.5 201 48.8
Gohir.D11G075300 Gossypium hirsutum HOM05D006539 ORTHO05D008694 4.6e-46 189.1 164 53.0
Gorai.007G080900 Gossypium raimondii HOM05D006539 ORTHO05D008694 4.6e-46 189.1 164 53.0
Psat3g198480 Pisum sativum HOM05D006539 ORTHO05D008694 4.6e-46 189.1 154 55.2
Gohir.A11G071300 Gossypium hirsutum HOM05D006539 ORTHO05D008694 6.0e-46 188.7 164 53.0
arahy.Tifrunner.gnm1.ann1.54MYG6 Arachis hypogaea HOM05D006539 ORTHO05D008694 7.9e-46 188.3 154 54.5
Atru.chr8.368 Acer truncatum HOM05D006539 ORTHO05D008694 1.0e-45 188.0 224 42.9
CiPaw.03G091900 Carya illinoinensis HOM05D006539 ORTHO05D008694 1.0e-45 188.0 152 55.9
CDE06G2615 Ceratophyllum demersum HOM05D006539 ORTHO05D008694 1.0e-45 188.0 157 56.7
Eucgr.I01991 Eucalyptus grandis HOM05D006539 ORTHO05D008694 1.0e-45 188.0 152 55.9
Phvul.008G040300 Phaseolus vulgaris HOM05D006539 ORTHO05D008694 1.0e-45 188.0 152 53.9
TWI32G0765 Tripterygium wilfordii HOM05D006539 ORTHO05D008694 1.0e-45 188.0 167 52.1
GSVIVG01011483001 Vitis vinifera HOM05D006539 ORTHO05D008694 1.0e-45 188.0 153 55.6
PGSC0003DMG400001350 Solanum tuberosum HOM05D006539 ORTHO05D008694 1.3e-45 187.6 156 53.2
CANSAT64G0188 Cannabis sativa HOM05D006539 ORTHO05D008694 1.8e-45 187.2 153 53.6
Aqoxy3G00450 Aquilegia oxysepala HOM05D006539 ORTHO05D008694 2.3e-45 186.8 223 41.3
Solyc02g088540.3 Solanum lycopersicum HOM05D006539 ORTHO05D008694 3.9e-45 186.0 195 46.2
Ciclev10013894m.g Citrus clementina HOM05D006539 ORTHO05D008694 5.1e-45 185.7 208 45.7
Medtr7g012240 Medicago truncatula HOM05D006539 ORTHO05D008694 5.1e-45 185.7 203 45.8
CAN.G206.194 Capsicum annuum HOM05D006539 ORTHO05D008694 6.7e-45 185.3 157 52.2
Lsat_1_v5_gn_4_170180 Lactuca sativa HOM05D006539 ORTHO05D008694 6.7e-45 185.3 171 51.5
A10p23500 Brassica napus HOM05D006539 ORTHO05D008694 8.7e-45 184.9 174 51.7
PSO478G0472 Papaver somniferum HOM05D006539 ORTHO05D008694 8.7e-45 184.9 226 43.4
Thecc.04G090200 Theobroma cacao HOM05D006539 ORTHO05D008694 8.7e-45 184.9 152 53.3
AUR62018139 Chenopodium quinoa HOM05D006539 ORTHO05D008694 1.1e-44 184.5 152 55.3
Ca_06802_v3 Cicer arietinum L. HOM05D006539 ORTHO05D008694 1.1e-44 184.5 152 55.3
ClCG10G015450 Citrullus lanatus HOM05D003516 ORTHO05D004068 1.1e-44 184.5 152 54.6
Cpa.g.sc14.138 Carica papaya HOM05D006539 ORTHO05D008694 1.5e-44 184.1 179 50.3
Thhalv10013964m.g Eutrema salsugineum HOM05D006539 ORTHO05D008694 1.5e-44 184.1 180 49.4
FAN05G4473 Fragaria x ananassa HOM05D006539 ORTHO05D008694 1.5e-44 184.1 152 55.9
Os07g0598100 Oryza sativa ssp. japonica HOM05D006539 ORTHO05D008694 1.5e-44 184.1 152 53.9
Lju41A8T108 Lonicera japonica HOM05D006539 ORTHO05D008694 1.9e-44 183.7 153 53.6
Sp6g28700 Schrenkiella parvula HOM05D006539 ORTHO05D008694 1.9e-44 183.7 164 51.8
Sed0012723 Sechium edule HOM05D003516 ORTHO05D004068 2.5e-44 183.3 152 54.6
BcaC04g24242 Brassica carinata HOM05D006539 ORTHO05D008694 3.3e-44 183.0 197 47.7
Haze_14476 Corylus avellana HOM05D003516 ORTHO05D004068 3.3e-44 183.0 202 47.0
Duzib264G0172 Durio zibethinus HOM05D006539 ORTHO05D008694 3.3e-44 183.0 180 50.6
QL02p039353 Quercus lobata HOM05D006539 ORTHO05D008694 3.3e-44 183.0 156 55.8
QL02p039600 Quercus lobata HOM05D006539 ORTHO05D008694 3.3e-44 183.0 156 55.8
C09p61730 Brassica napus HOM05D006539 ORTHO05D008694 4.3e-44 182.6 197 47.2
Lj1g0006679 Lotus japonicus HOM05D006539 ORTHO05D008694 4.3e-44 182.6 152 53.9
ATR0111G028 Amborella trichopoda HOM05D006539 ORTHO05D008694 7.4e-44 181.8 176 49.4
FvH4_6g47560 Fragaria vesca HOM05D006539 ORTHO05D008694 7.4e-44 181.8 164 53.0
Sopen02g033260 Solanum pennellii HOM05D006539 ORTHO05D008694 7.4e-44 181.8 195 45.1
Hund15564 Selenicereus undatus HOM05D006539 ORTHO05D008694 9.7e-44 181.4 152 54.6
RcHm_v2.0_Chr2g0166661 Rosa chinensis HOM05D006539 ORTHO05D008694 1.3e-43 181.0 153 53.6
CsaV3_3G041040 Cucumis sativus L. HOM05D006539 ORTHO05D008694 1.6e-43 180.6 152 53.3
MD17G1055800 Malus domestica HOM05D006539 ORTHO05D008694 1.6e-43 180.6 152 53.3
DCAR_011065 Daucus carota HOM05D006539 ORTHO05D008694 2.2e-43 180.3 152 52.0
Oeu000853.1 Olea europaea HOM05D006539 ORTHO05D008694 2.2e-43 180.3 154 53.2
Peaxi162Scf00166g00943 Petunia axillaris HOM05D006539 ORTHO05D008694 2.2e-43 180.3 226 40.7
CARHR197920 Cardamine hirsuta HOM05D006539 ORTHO05D008694 2.8e-43 179.9 199 47.7
AT5G15390 Arabidopsis thaliana HOM05D006539 ORTHO05D008694 3.7e-43 179.5 201 47.3
EL10Ac2g03043 Beta vulgaris HOM05D006539 ORTHO05D008694 3.7e-43 179.5 154 53.9
SGA_v2.0_scaffold4G02416 Striga asiatica HOM05D006539 ORTHO05D008694 3.7e-43 179.5 201 44.3
Nitab4.5_0008573g0030 Nicotiana tabacum HOM05D006539 ORTHO05D008694 4.8e-43 179.1 223 41.3
HPP92_006554 Vanilla planifolia HOM05D006539 ORTHO05D008694 6.3e-43 178.7 165 53.9
SalBow1G8487 Salvia bowleyana HOM05D006539 ORTHO05D008694 8.2e-43 178.3 183 47.5
THA.LOC104822345 Tarenaya hassleriana HOM05D006539 ORTHO05D008694 1.1e-42 177.9 200 44.5
MSTRG.23905 Avicennia marina HOM05D006539 ORTHO05D008694 1.4e-42 177.6 164 49.4
Carub.0006s1356 Capsella rubella HOM05D006539 ORTHO05D008694 1.4e-42 177.6 199 47.2
ECA232G1677 Erigeron canadensis HOM05D006539 ORTHO05D008694 1.4e-42 177.6 263 40.7
Zm00001eb326670 Zea mays HOM05D006539 ORTHO05D008694 1.4e-42 177.6 155 51.6
BraA10t44417Z Brassica rapa HOM05D006539 ORTHO05D008694 1.8e-42 177.2 183 49.2
PGR004G2004 Punica granatum HOM05D006539 ORTHO05D008694 1.8e-42 177.2 194 46.9
HPP92_013411 Vanilla planifolia HOM05D006539 ORTHO05D008694 1.8e-42 177.2 165 53.3
Migut.H00658 Erythranthe guttata HOM05D006539 ORTHO05D008694 2.4e-42 176.8 154 51.9
BolC9t59012H Brassica oleracea HOM05D006539 ORTHO05D008694 3.1e-42 176.4 197 45.2
vmacro05668 Vaccinium macrocarpon HOM05D006539 ORTHO05D008694 3.1e-42 176.4 151 51.7
Rhsim10G0046900 Rhododendron simsii HOM05D006539 ORTHO05D008694 9.0e-42 174.9 294 37.4
SMO116G0014 Selaginella moellendorffii HOM05D006539 ORTHO05D008694 9.0e-42 174.9 155 54.8
HanXRQChr09g0264131 Helianthus annuus HOM05D006539 ORTHO05D008694 1.5e-41 174.1 186 45.7
AL6G26250 Arabidopsis lyrata HOM05D006539 ORTHO05D008694 1.7e-40 170.6 201 45.3
CBR_g38172 Chara braunii HOM05D006539 ORTHO05D008694 1.1e-39 167.9 156 51.9
Sc11g0004810 Simmondsia chinensis HOM05D006539 ORTHO05D008694 1.4e-39 167.5 202 44.1
unitig_899.g15160 Utricularia gibba HOM05D006539 ORTHO05D008694 3.9e-37 159.5 153 46.4
Dinv33805 Davidia involucrata HOM05D006539 ORTHO05D008694 2.0e-36 157.1 136 52.9
FAN14G0848 Fragaria x ananassa HOM05D006539 ORTHO05D008694 1.7e-35 154.1 116 58.6
FAN09G1445 Fragaria x ananassa HOM05D006539 ORTHO05D008694 3.7e-35 152.9 138 52.9
CSS0042966 Camellia sinensis var. sinensis HOM05D006539 ORTHO05D008694 8.2e-35 151.8 195 43.6
arahy.Tifrunner.gnm1.ann1.B86ER2 Arachis hypogaea HOM05D006539 ORTHO05D009236 1.4e-34 151.0 132 50.8
CSS0047989 Camellia sinensis var. sinensis HOM05D006539 ORTHO05D008694 2.4e-34 150.2 195 43.6
Ca_06844_v3 Cicer arietinum L. HOM05D006539 ORTHO05D008694 1.7e-32 144.1 151 47.7
Cre03.g169700 Chlamydomonas reinhardtii HOM05D006539 ORTHO05D008694 1.9e-31 140.6 166 38.0
AUR62034477 Chenopodium quinoa HOM05D006539 ORTHO05D008694 2.5e-31 140.2 283 30.7
PRCOL_00002708 Prasinoderma coloniale HOM05D006539 ORTHO05D008694 2.0e-25 120.6 161 38.5
MELO3C009837.2 Cucumis melo HOM05D006539 ORTHO05D008694 7.7e-25 118.6 152 42.1
Nitab4.5_0003216g0020 Nicotiana tabacum HOM05D006539 ORTHO05D008694 1.1e-23 114.8 223 31.8
MCO16G092 Micromonas commoda HOM05D006539 ORTHO05D008694 4.8e-19 99.4 153 35.9
AUR62044515 Chenopodium quinoa HOM05D006539 ORTHO05D008694 1.0e-16 91.7 66 57.6
MD07G1179900 Malus domestica HOM05D006539 ORTHO05D008694 2.9e-16 90.1 86 48.8
HPP92_013416 Vanilla planifolia HOM05D006539 ORTHO05D008694 3.8e-16 89.7 98 51.0
MD11G1144500 Malus domestica HOM05D006539 ORTHO05D008694 6.5e-16 89.0 86 46.5
QL02p073354 Quercus lobata HOM05D006539 ORTHO05D008694 1.5e-12 77.8 105 48.6
HPP92_013415 Vanilla planifolia HOM05D006539 ORTHO05D008694 2.0e-12 77.4 101 38.6
FAN02G0136 Fragaria x ananassa HOM05D006539 ORTHO05D008694 3.8e-08 63.2 71 39.4


User provided reference genes

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