Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c3_18540 Physcomitrium patens HOM05D002908 ORTHO05D007390 7.2e-209 730.3 367 100.0
Mapoly0052s0120 Marchantia polymorpha HOM05D002908 ORTHO05D007390 6.7e-130 468.0 333 68.2
SMO146G0339 Selaginella moellendorffii HOM05D002908 ORTHO05D007390 3.7e-112 409.1 346 61.0
MBI04_g14938_MAGBIO Magnolia biondii HOM05D002908 ORTHO05D007390 1.9e-108 396.7 325 60.6
Oeu000462.1 Olea europaea HOM05D002908 ORTHO05D007390 4.2e-108 395.6 333 58.9
MSTRG.4742 Avicennia marina HOM05D002908 ORTHO05D007390 5.5e-108 395.2 325 60.6
Ciclev10026026m.g Citrus clementina HOM05D002908 ORTHO05D007390 7.2e-108 394.8 327 59.3
Potri.001G186000 Populus trichocarpa HOM05D002908 ORTHO05D007390 9.3e-108 394.4 325 59.4
Potri.003G051500 Populus trichocarpa HOM05D002908 ORTHO05D007390 1.6e-107 393.7 330 58.8
GSVIVG01017049001 Vitis vinifera HOM05D002908 ORTHO05D007390 1.6e-107 393.7 324 60.8
Os05g0275700 Oryza sativa ssp. japonica HOM05D002908 ORTHO05D007390 3.6e-107 392.5 325 61.2
SGA_v2.0_scaffold68G22970 Striga asiatica HOM05D002908 ORTHO05D007390 7.9e-107 391.3 325 60.6
MD09G1208200 Malus domestica HOM05D002908 ORTHO05D007390 1.0e-106 391.0 331 59.8
MD17G1189500 Malus domestica HOM05D002908 ORTHO05D007390 1.0e-106 391.0 328 59.8
PGR102G0394 Punica granatum HOM05D002908 ORTHO05D007390 1.0e-106 391.0 332 59.0
TWI18G0563 Tripterygium wilfordii HOM05D002908 ORTHO05D007390 1.0e-106 391.0 333 59.2
Cfa002106 Carpinus fangiana HOM05D002908 ORTHO05D007390 1.3e-106 390.6 326 60.7
CSS0023180 Camellia sinensis var. sinensis HOM05D002908 ORTHO05D007390 1.8e-106 390.2 322 59.6
Dinv30470 Davidia involucrata HOM05D002908 ORTHO05D007390 1.8e-106 390.2 328 59.8
TAR624G0208 Trochodendron aralioides HOM05D002908 ORTHO05D007390 1.1e-105 387.5 326 59.2
Cc06_g20260 Coffea canephora HOM05D002908 ORTHO05D007390 1.5e-105 387.1 328 58.5
Migut.D01011 Erythranthe guttata HOM05D002908 ORTHO05D007390 1.5e-105 387.1 337 59.3
Manes.11G036900 Manihot esculenta HOM05D002908 ORTHO05D007390 1.5e-105 387.1 334 58.7
Thecc.06G094700 Theobroma cacao HOM05D002908 ORTHO05D007390 1.5e-105 387.1 327 59.9
Aqoxy7G01537 Aquilegia oxysepala HOM05D002908 ORTHO05D007390 1.9e-105 386.7 325 58.8
Eucgr.J02953 Eucalyptus grandis HOM05D002908 ORTHO05D007390 2.5e-105 386.3 332 58.4
Duzib235G0543 Durio zibethinus HOM05D002908 ORTHO05D007390 3.3e-105 386.0 329 59.9
ClCG07G013190 Citrullus lanatus HOM05D002908 ORTHO05D007390 5.7e-105 385.2 322 60.2
Manes.04G131100 Manihot esculenta HOM05D002908 ORTHO05D007390 7.4e-105 384.8 330 58.8
Gorai.010G229600 Gossypium raimondii HOM05D002908 ORTHO05D007390 9.7e-105 384.4 327 59.9
Atru.chr1.3416 Acer truncatum HOM05D002908 ORTHO05D007390 1.3e-104 384.0 325 57.5
CDE05G0315 Ceratophyllum demersum HOM05D002908 ORTHO05D007390 1.6e-104 383.6 331 57.7
HanXRQChr12g0360831 Helianthus annuus HOM05D002908 ORTHO05D007390 1.6e-104 383.6 325 59.1
SGA_v2.0_scaffold4G02012 Striga asiatica HOM05D002908 ORTHO05D007390 1.6e-104 383.6 331 58.9
vmacro18877 Vaccinium macrocarpon HOM05D002908 ORTHO05D007390 1.6e-104 383.6 325 59.7
MELO3C012977.2 Cucumis melo HOM05D002908 ORTHO05D007390 2.2e-104 383.3 322 60.2
CsaV3_3G023830 Cucumis sativus L. HOM05D002908 ORTHO05D007390 2.2e-104 383.3 322 59.9
Nitab4.5_0009963g0020 Nicotiana tabacum HOM05D002908 ORTHO05D007390 2.2e-104 383.3 332 58.4
arahy.Tifrunner.gnm1.ann1.0NGS5F Arachis hypogaea HOM05D002908 ORTHO05D007390 2.8e-104 382.9 326 58.9
arahy.Tifrunner.gnm1.ann1.E6TYPI Arachis hypogaea HOM05D002908 ORTHO05D007390 2.8e-104 382.9 326 58.9
CAN.G1152.12 Capsicum annuum HOM05D002908 ORTHO05D007390 3.7e-104 382.5 322 59.0
QL05p021375 Quercus lobata HOM05D002908 ORTHO05D007390 3.7e-104 382.5 337 58.5
Sed0011260 Sechium edule HOM05D002908 ORTHO05D007390 3.7e-104 382.5 322 59.6
ATR0315G165 Amborella trichopoda HOM05D002908 ORTHO05D007390 4.8e-104 382.1 332 58.7
RcHm_v2.0_Chr2g0139271 Rosa chinensis HOM05D002908 ORTHO05D007390 4.8e-104 382.1 333 58.3
FvH4_6g31910 Fragaria vesca HOM05D002908 ORTHO05D007390 6.3e-104 381.7 329 59.3
FAN14G2394 Fragaria x ananassa HOM05D002908 ORTHO05D007390 6.3e-104 381.7 329 59.3
FAN09G2740 Fragaria x ananassa HOM05D002908 ORTHO05D007390 8.2e-104 381.3 329 59.3
Nn2g11662 Nelumbo nucifera HOM05D002908 ORTHO05D007390 1.1e-103 380.9 328 59.8
Sabra03G0027500 Salix brachista HOM05D002908 ORTHO05D007390 1.1e-103 380.9 361 54.3
Sopen06g024840 Solanum pennellii HOM05D002908 ORTHO05D007390 1.1e-103 380.9 334 58.1
FAN02G4032 Fragaria x ananassa HOM05D002908 ORTHO05D007390 1.4e-103 380.6 329 59.3
COL.COLO4_30459 Corchorus olitorius HOM05D002908 ORTHO05D007390 1.8e-103 380.2 326 59.5
Solyc06g066570.4 Solanum lycopersicum HOM05D002908 ORTHO05D007390 1.8e-103 380.2 335 58.2
CANSAT56G3591 Cannabis sativa HOM05D002908 ORTHO05D007390 2.4e-103 379.8 327 58.1
PGSC0003DMG400016501 Solanum tuberosum HOM05D002908 ORTHO05D007390 2.4e-103 379.8 334 58.1
Gorai.011G073300 Gossypium raimondii HOM05D002908 ORTHO05D007390 3.1e-103 379.4 328 59.1
Sc15g0002180 Simmondsia chinensis HOM05D002908 ORTHO05D007390 3.1e-103 379.4 326 58.6
HPP92_002914 Vanilla planifolia HOM05D002908 ORTHO05D007390 3.1e-103 379.4 346 57.2
PSO782G2745 Papaver somniferum HOM05D002908 ORTHO05D007390 4.1e-103 379.0 327 59.0
Glyma.08G203400 Glycine max HOM05D002908 ORTHO05D007390 5.3e-103 378.6 325 58.5
Lalb_Chr01g0013051 Lupinus albus HOM05D002908 ORTHO05D007390 5.3e-103 378.6 327 58.7
PSO566G0119 Papaver somniferum HOM05D002908 ORTHO05D007390 5.3e-103 378.6 327 59.0
Actinidia32717 Actinidia chinensis HOM05D002908 ORTHO05D007390 6.9e-103 378.3 325 58.5
Ca_11526_v3 Cicer arietinum L. HOM05D002908 ORTHO05D007390 9.1e-103 377.9 324 58.6
THA.LOC104813553 Tarenaya hassleriana HOM05D002908 ORTHO05D007390 9.1e-103 377.9 328 57.0
AUR62011685 Chenopodium quinoa HOM05D002908 ORTHO05D007390 1.2e-102 377.5 324 58.3
Peaxi162Scf00015g00145 Petunia axillaris HOM05D002908 ORTHO05D007390 1.2e-102 377.5 322 57.8
Duzib192G0943 Durio zibethinus HOM05D002908 ORTHO05D007390 2.6e-102 376.3 329 58.7
VMungo0331G0294 Vigna mungo HOM05D002908 ORTHO05D007390 2.6e-102 376.3 325 58.8
Phvul.010G147500 Phaseolus vulgaris HOM05D002908 ORTHO05D007390 5.9e-102 375.2 325 58.2
Medtr8g013660 Medicago truncatula HOM05D002908 ORTHO05D007390 1.7e-101 373.6 325 58.2
TAR636G3411 Trochodendron aralioides HOM05D002908 ORTHO05D007390 2.9e-101 372.9 328 57.0
TPR.G14821 Trifolium pratense HOM05D002908 ORTHO05D007390 3.8e-101 372.5 326 58.6
CARHR074760 Cardamine hirsuta HOM05D002908 ORTHO05D007390 5.0e-101 372.1 331 56.5
AT1G79810 Arabidopsis thaliana HOM05D002908 ORTHO05D007390 6.5e-101 371.7 331 57.1
BraA07t30278Z Brassica rapa HOM05D002908 ORTHO05D007390 6.5e-101 371.7 330 57.3
Lsat_1_v5_gn_5_131021 Lactuca sativa HOM05D002908 ORTHO05D007390 6.5e-101 371.7 325 57.2
AL2G41740 Arabidopsis lyrata HOM05D002908 ORTHO05D007390 8.5e-101 371.3 331 56.8
A07p26340 Brassica napus HOM05D002908 ORTHO05D007390 8.5e-101 371.3 330 57.3
ECA234G0421 Erigeron canadensis HOM05D002908 ORTHO05D007390 8.5e-101 371.3 327 57.2
HanXRQChr04g0096211 Helianthus annuus HOM05D002908 ORTHO05D007390 8.5e-101 371.3 328 57.9
Glyma.07G018400 Glycine max HOM05D002908 ORTHO05D007390 1.4e-100 370.5 327 58.1
C06p28730 Brassica napus HOM05D002908 ORTHO05D007390 2.5e-100 369.8 327 57.5
BolC6t38042H Brassica oleracea HOM05D002908 ORTHO05D007390 2.5e-100 369.8 330 57.0
Nitab4.5_0000351g0020 Nicotiana tabacum HOM05D002908 ORTHO05D007390 2.5e-100 369.8 345 55.9
Actinidia21691 Actinidia chinensis HOM05D002908 ORTHO05D007390 4.2e-100 369.0 303 61.1
Hund00658 Selenicereus undatus HOM05D002908 ORTHO05D007390 5.5e-100 368.6 323 57.3
Sp5g35950 Schrenkiella parvula HOM05D002908 ORTHO05D007390 1.2e-99 367.5 330 56.4
EL10Ac9g22051 Beta vulgaris HOM05D002908 ORTHO05D007390 2.1e-99 366.7 324 56.2
Carub.0002s2769 Capsella rubella HOM05D002908 ORTHO05D007390 3.6e-99 365.9 331 56.2
Zm00001eb031430 Zea mays HOM05D002908 ORTHO05D007390 1.1e-97 360.9 291 62.9
Thhalv10018845m.g Eutrema salsugineum HOM05D002908 ORTHO05D007390 2.6e-97 359.8 331 55.3
unitig_736.g22790 Utricularia gibba HOM05D002908 ORTHO05D007390 2.6e-97 359.8 330 56.7
Aa31LG4G20 Aethionema arabicum HOM05D002908 ORTHO05D007390 6.3e-96 355.1 363 52.1
Lj5C318G10 Lonicera japonica HOM05D002908 ORTHO05D007390 6.3e-96 355.1 293 61.4
Haze_16343 Corylus avellana HOM05D002908 ORTHO05D007390 1.2e-94 350.9 294 61.2
Rhsim08G0224800 Rhododendron simsii HOM05D002908 ORTHO05D007390 5.9e-94 348.6 321 56.7
AUR62016511 Chenopodium quinoa HOM05D002908 ORTHO05D007390 6.5e-93 345.1 295 60.7
CBR_g960 Chara braunii HOM05D002908 ORTHO05D007390 1.4e-92 344.0 371 50.7
Lj3g0013088 Lotus japonicus HOM05D002908 ORTHO05D007390 9.4e-92 341.3 295 58.0
Hund06642 Selenicereus undatus HOM05D002908 ORTHO05D007390 7.9e-91 338.2 293 59.0
SalBow7G1474 Salvia bowleyana HOM05D002908 ORTHO05D007390 2.3e-90 336.7 345 53.6
Sabra01G0154100 Salix brachista HOM05D002908 ORTHO05D007390 6.7e-90 335.1 320 55.3
Gohir.A06G188700 Gossypium hirsutum HOM05D002908 ORTHO05D007390 3.5e-86 322.8 260 62.7
Gohir.D06G197300 Gossypium hirsutum HOM05D002908 ORTHO05D007390 3.5e-86 322.8 260 62.7
Prupe.3G064400 Prunus persica HOM05D002908 ORTHO05D007390 1.3e-85 320.9 260 62.3
Lsat_1_v5_gn_1_35361 Lactuca sativa HOM05D002908 ORTHO05D007390 1.0e-82 311.2 297 55.9
CiPaw.02G148100 Carya illinoinensis HOM05D002908 ORTHO05D007390 2.3e-82 310.1 258 60.1
Dinv38008 Davidia involucrata HOM05D002908 ORTHO05D007390 2.0e-81 307.0 233 64.8
Gohir.D10G068700 Gossypium hirsutum HOM05D002908 ORTHO05D007390 2.2e-77 293.5 260 59.2
DCAR_026336 Daucus carota HOM05D002908 ORTHO05D007390 7.2e-76 288.5 364 45.9
AagrBONN_evm.TU.Sc2ySwM_228.2361 Anthoceros agrestis HOM05D002908 ORTHO05D007390 3.5e-70 269.6 209 64.6
CiPaw.01G234600 Carya illinoinensis HOM05D002908 ORTHO05D007390 1.7e-69 267.3 227 60.8
SEGI_14821 Sequoiadendron giganteum HOM05D002908 ORTHO05D007390 1.6e-67 260.8 214 58.4
Cpa.g.sc109.47 Carica papaya HOM05D002908 ORTHO05D007390 6.1e-59 232.3 167 67.7
MCO16G131 Micromonas commoda HOM05D002908 ORTHO05D007390 1.4e-55 221.1 328 38.1
Gohir.A10G083732 Gossypium hirsutum HOM05D002908 ORTHO05D007390 7.8e-54 215.3 178 59.6
Cre17.g698800 Chlamydomonas reinhardtii HOM05D002908 ORTHO05D007390 2.9e-48 196.8 434 34.1
Lalb_Chr25g0280041 Lupinus albus HOM05D002908 ORTHO05D007390 3.3e-44 183.3 207 49.8
Sed0019299 Sechium edule HOM05D002908 ORTHO05D007390 1.3e-40 171.4 207 47.8
Psat4g199400 Pisum sativum HOM05D002908 ORTHO05D007390 2.7e-38 163.7 142 59.2
PRCOL_00006980 Prasinoderma coloniale HOM05D000198 ORTHO05D003232 2.7e-38 163.7 311 37.6
SEGI_00949 Sequoiadendron giganteum HOM05D002908 ORTHO05D007390 3.3e-36 156.8 108 63.9
Lsat_1_v5_gn_1_85060 Lactuca sativa HOM05D002908 ORTHO05D007390 6.4e-32 142.5 197 43.7
PGSC0003DMG400002631 Solanum tuberosum HOM05D002908 ORTHO05D007390 1.2e-22 111.7 299 32.1
Lj5C56G8 Lonicera japonica HOM05D002908 ORTHO05D007390 3.5e-22 110.2 228 39.5
CAN.G438.36 Capsicum annuum HOM05D002908 ORTHO05D007390 2.5e-20 104.0 116 52.6
Rhsim02G0192800 Rhododendron simsii HOM05D002908 ORTHO05D004240 1.5e-17 94.7 57 75.4
Solyc03g120520.2 Solanum lycopersicum HOM05D002908 ORTHO05D007390 3.4e-17 93.6 238 31.1
Rhsim03G0241200 Rhododendron simsii HOM05D002908 ORTHO05D050692 1.2e-06 58.5 63 50.8
Rhsim12G0105800 Rhododendron simsii HOM05D002908 ORTHO05D340239 6.0e-06 56.2 52 50.0


User provided reference genes

Program Settings