Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c3_16960 Physcomitrium patens HOM05D007125 ORTHO05D008766 0.0e+00 2853.5 1421 100.0
Mapoly0113s0048 Marchantia polymorpha HOM05D007125 ORTHO05D008766 5.3e-308 1061.6 1351 46.2
Pp3c9_8840 Physcomitrium patens HOM05D007125 ORTHO05D008766 8.2e-293 1011.1 1294 46.1
SMO358G0023 Selaginella moellendorffii HOM05D007125 ORTHO05D008766 1.4e-263 914.1 1263 43.8
AagrBONN_evm.TU.Sc2ySwM_228.1352 Anthoceros agrestis HOM05D007125 ORTHO05D008766 2.4e-260 903.3 1222 43.2
ATR0618G048 Amborella trichopoda HOM05D007125 ORTHO05D008766 4.2e-188 663.3 757 46.2
MBI05_g03452_MAGBIO Magnolia biondii HOM05D007125 ORTHO05D008766 1.3e-181 641.7 742 44.3
Aqoxy1G00714 Aquilegia oxysepala HOM05D007125 ORTHO05D008766 3.2e-180 637.1 767 43.2
Haze_20950 Corylus avellana HOM05D007125 ORTHO05D008766 3.9e-170 603.6 758 42.0
Cpa.g.sc56.115 Carica papaya HOM05D007125 ORTHO05D008766 7.4e-169 599.4 753 42.6
Potri.006G096400 Populus trichocarpa HOM05D007125 ORTHO05D008766 2.4e-167 594.3 765 41.8
PSO384G0252 Papaver somniferum HOM05D007125 ORTHO05D008766 5.9e-166 589.7 795 39.1
Duzib093G0828 Durio zibethinus HOM05D007125 ORTHO05D008766 5.0e-165 586.6 764 40.2
Nn2g11366 Nelumbo nucifera HOM05D007125 ORTHO05D008766 5.0e-165 586.6 774 40.1
Sabra06G0074100 Salix brachista HOM05D007125 ORTHO05D008766 1.2e-163 582.0 745 41.7
Actinidia29131 Actinidia chinensis HOM05D007125 ORTHO05D008766 2.7e-163 580.9 767 40.4
TWI77G0961 Tripterygium wilfordii HOM05D007125 ORTHO05D008766 7.9e-163 579.3 788 40.6
COL.COLO4_14596 Corchorus olitorius HOM05D007125 ORTHO05D008766 1.5e-161 575.1 808 40.1
Thecc.05G022200 Theobroma cacao HOM05D007125 ORTHO05D008766 1.4e-159 568.5 769 39.8
TAR623G0133 Trochodendron aralioides HOM05D007125 ORTHO05D008766 1.0e-157 562.4 764 39.4
CANSAT35G1716 Cannabis sativa HOM05D007125 ORTHO05D008766 1.3e-157 562.0 780 40.8
Ciclev10013588m.g Citrus clementina HOM05D007125 ORTHO05D008766 1.3e-157 562.0 750 39.9
CiPaw.09G206100 Carya illinoinensis HOM05D007125 ORTHO05D008766 2.9e-157 560.8 754 39.9
GSVIVG01034011001 Vitis vinifera HOM05D007125 ORTHO05D008766 4.2e-156 557.0 773 39.7
Dinv35513 Davidia involucrata HOM05D007125 ORTHO05D008766 2.6e-153 547.7 819 38.1
Sopen09g007020 Solanum pennellii HOM05D007125 ORTHO05D008766 5.7e-153 546.6 764 39.8
Solyc09g013160.3 Solanum lycopersicum HOM05D007125 ORTHO05D008766 9.7e-153 545.8 763 40.0
Sed0001650 Sechium edule HOM05D007125 ORTHO05D008766 1.7e-152 545.0 796 38.3
CsaV3_4G025990 Cucumis sativus L. HOM05D007125 ORTHO05D008766 4.8e-152 543.5 757 39.1
Hma1.2p1_0763F.1_g214640 Hydrangea macrophylla HOM05D007125 ORTHO05D008766 6.3e-152 543.1 758 39.6
Nitab4.5_0009193g0010 Nicotiana tabacum HOM05D007125 ORTHO05D008766 2.0e-150 538.1 765 39.1
Nitab4.5_0000008g0740 Nicotiana tabacum HOM05D007125 ORTHO05D008766 1.1e-148 532.3 755 39.5
vmacro20236 Vaccinium macrocarpon HOM05D007125 ORTHO05D008766 9.4e-148 529.3 808 37.3
Lj1g0008640 Lotus japonicus HOM05D007125 ORTHO05D008766 1.0e-146 525.8 750 40.3
THA.LOC104823281 Tarenaya hassleriana HOM05D007125 ORTHO05D008766 6.7e-146 523.1 758 39.6
Lj2A79T37 Lonicera japonica HOM05D007125 ORTHO05D008766 1.5e-145 521.9 780 37.9
PGR031G2086 Punica granatum HOM05D007125 ORTHO05D008766 5.7e-145 520.0 751 39.0
ClCG04G007250 Citrullus lanatus HOM05D007125 ORTHO05D008766 6.3e-144 516.5 754 38.7
Phvul.008G107900 Phaseolus vulgaris HOM05D007125 ORTHO05D008766 1.2e-142 512.3 766 37.2
BraA01t04316Z Brassica rapa HOM05D007125 ORTHO05D008766 5.0e-141 506.9 754 38.9
BcaC09g48007 Brassica carinata HOM05D007125 ORTHO05D008766 8.5e-141 506.1 755 38.4
CDE04G1007 Ceratophyllum demersum HOM05D007125 ORTHO05D008766 1.5e-140 505.4 853 35.3
arahy.Tifrunner.gnm1.ann1.A1GI61 Arachis hypogaea HOM05D007125 ORTHO05D008766 1.2e-139 502.3 738 39.3
arahy.Tifrunner.gnm1.ann1.8EY2MC Arachis hypogaea HOM05D007125 ORTHO05D008766 1.6e-139 501.9 759 38.2
BolC1t05475H Brassica oleracea HOM05D007125 ORTHO05D008766 1.6e-139 501.9 753 38.5
Lsat_1_v5_gn_8_99881 Lactuca sativa HOM05D007125 ORTHO05D008766 6.1e-139 500.0 759 36.6
CARHR083450 Cardamine hirsuta HOM05D007125 ORTHO05D008766 8.0e-139 499.6 907 35.3
AL3G20150 Arabidopsis lyrata HOM05D007125 ORTHO05D008766 1.8e-135 488.4 1062 32.0
Carub.0003s0824 Capsella rubella HOM05D007125 ORTHO05D008766 2.4e-135 488.0 756 38.5
Ca_09172_v3 Cicer arietinum L. HOM05D007125 ORTHO05D008766 2.0e-134 485.0 867 34.7
TPR.G1550 Trifolium pratense HOM05D007125 ORTHO05D008766 1.0e-133 482.6 752 37.2
Glyma.07G144800 Glycine max HOM05D007125 ORTHO05D008766 3.8e-133 480.7 1102 30.9
DCAR_024035 Daucus carota HOM05D007125 ORTHO05D008766 1.5e-132 478.8 763 36.4
Migut.J00225 Erythranthe guttata HOM05D007125 ORTHO05D008766 2.0e-129 468.4 746 36.3
Oeu044362.1 Olea europaea HOM05D007125 ORTHO05D008766 2.6e-129 468.0 699 37.9
AT3G09080 Arabidopsis thaliana HOM05D007125 ORTHO05D008766 7.3e-124 449.9 1010 31.3
ECA236G2625 Erigeron canadensis HOM05D007125 ORTHO05D008766 1.7e-120 438.7 765 34.8
SalBow5G1282 Salvia bowleyana HOM05D007125 ORTHO05D008766 8.3e-120 436.4 768 34.8
VMungo1383G2599 Vigna mungo HOM05D007125 ORTHO05D008766 1.1e-119 436.0 707 35.2
MELO3C003224.2 Cucumis melo HOM05D007125 ORTHO05D008766 3.2e-119 434.5 755 34.4
Sp3g07530 Schrenkiella parvula HOM05D007125 ORTHO05D008766 3.2e-119 434.5 658 38.1
Lalb_Chr03g0042991 Lupinus albus HOM05D007125 ORTHO05D008766 3.5e-118 431.0 659 37.5
Psat3g131480 Pisum sativum HOM05D007125 ORTHO05D008766 8.6e-117 426.4 781 34.6
HanXRQChr04g0102021 Helianthus annuus HOM05D007125 ORTHO05D008766 2.5e-116 424.9 656 37.5
Gohir.D09G158900 Gossypium hirsutum HOM05D007125 ORTHO05D008766 6.2e-115 420.2 564 40.4
Gorai.006G180600 Gossypium raimondii HOM05D007125 ORTHO05D008766 4.6e-110 404.1 564 39.7
MCO08G172 Micromonas commoda HOM05D007125 ORTHO05D008766 6.6e-109 400.2 882 31.7
SEGI_28201 Sequoiadendron giganteum HOM05D007125 ORTHO05D008766 8.3e-104 383.3 384 51.3
Manes.08G087700 Manihot esculenta HOM05D007125 ORTHO05D008766 8.9e-98 363.2 497 38.8
Cre01.g034600 Chlamydomonas reinhardtii HOM05D007125 ORTHO05D008766 9.9e-97 359.8 842 31.1
Sc01g0006770 Simmondsia chinensis HOM05D007125 ORTHO05D008766 4.3e-84 317.8 532 37.2
Aa31LG3G1610 Aethionema arabicum HOM05D007125 ORTHO05D008766 6.2e-83 313.9 762 29.5
PGSC0003DMG400020348 Solanum tuberosum HOM05D007125 ORTHO05D008766 6.2e-83 313.9 428 40.9
MSTRG.19028 Avicennia marina HOM05D007125 ORTHO05D008766 1.2e-81 309.7 506 36.6
Thhalv10022253m.g Eutrema salsugineum HOM05D007125 ORTHO05D008766 1.9e-79 302.4 1051 27.4
Gohir.A09G163400 Gossypium hirsutum HOM05D007125 ORTHO05D008766 3.5e-78 298.1 354 41.5
Atru.chr8.2198 Acer truncatum HOM05D007125 ORTHO05D008766 4.6e-78 297.7 355 42.0
Medtr7g066770 Medicago truncatula HOM05D007125 ORTHO05D008766 1.5e-76 292.7 496 37.3
CSS0003995 Camellia sinensis var. sinensis HOM05D007125 ORTHO05D008766 7.1e-63 247.3 299 43.1
Atru.chr8.2197 Acer truncatum HOM05D007125 ORTHO05D008766 5.2e-37 161.4 197 46.2
Medtr7g066750 Medicago truncatula HOM05D007125 ORTHO05D008766 2.1e-30 139.4 154 41.6
HanXRQChr04g0102011 Helianthus annuus HOM05D007125 ORTHO05D008766 2.0e-25 122.9 109 46.8
Cfa025266 Carpinus fangiana HOM05D007125 ORTHO05D008766 4.5e-25 121.7 861 21.5
Sc01g0006780 Simmondsia chinensis HOM05D007125 ORTHO05D008766 1.2e-20 107.1 102 46.1
unitig_27.g24821 Utricularia gibba HOM05D007125 ORTHO05D008766 5.7e-20 104.8 173 35.3
MSTRG.19029 Avicennia marina HOM05D007125 ORTHO05D008766 7.0e-18 97.8 107 43.9
arahy.Tifrunner.gnm1.ann1.KE62B1 Arachis hypogaea HOM05D007125 ORTHO05D008766 2.0e-17 96.3 225 30.7
arahy.Tifrunner.gnm1.ann1.IUS8SN Arachis hypogaea HOM05D007125 ORTHO05D008766 3.5e-17 95.5 225 30.2
arahy.Tifrunner.gnm1.ann1.KIE2XR Arachis hypogaea HOM05D007125 ORTHO05D008766 2.3e-16 92.8 225 30.2
Sc01g0006790 Simmondsia chinensis HOM05D007125 ORTHO05D008766 4.2e-15 88.6 94 39.4
MCO12G477 Micromonas commoda HOM05D009332 ORTHO05D011893 1.7e-11 76.6 594 21.9
Mapoly0007s0003 Marchantia polymorpha HOM05D000526 ORTHO05D000956 2.2e-11 76.3 272 21.7
MCO09G563 Micromonas commoda HOM05D009332 ORTHO05D011893 1.1e-10 73.9 213 28.6
PRCOL_00000269 Prasinoderma coloniale HOM05D009332 ORTHO05D011893 1.8e-10 73.2 663 23.4
PRCOL_00005200 Prasinoderma coloniale HOM05D009332 ORTHO05D011893 1.8e-10 73.2 180 31.7
VMungo1383G1324 Vigna mungo HOM05D007125 ORTHO05D008766 5.4e-10 71.6 85 48.2
CSS0006466 Camellia sinensis var. sinensis HOM05D007125 ORTHO05D008766 9.2e-10 70.9 76 50.0
Pp3c8_6330 Physcomitrium patens HOM05D000526 ORTHO05D000956 1.6e-09 70.1 256 21.1
MCO13G159 Micromonas commoda HOM05D009332 ORTHO05D011893 2.7e-09 69.3 207 27.5
PRCOL_00001262 Prasinoderma coloniale HOM05D009332 ORTHO05D011893 2.7e-09 69.3 201 28.4
MD04G1021900 Malus domestica HOM05D000526 ORTHO05D000956 4.5e-09 68.6 363 20.7
Lsat_1_v5_gn_6_17160 Lactuca sativa HOM05D000526 ORTHO05D000956 5.9e-09 68.2 259 22.8
Manes.03G148800 Manihot esculenta HOM05D000836 ORTHO05D000709 5.9e-09 68.2 268 22.0
Cre14.g613400 Chlamydomonas reinhardtii HOM05D037949 ORTHO05D034420 1.0e-08 67.4 201 26.9
Cc08_g04380 Coffea canephora HOM05D000526 ORTHO05D000956 1.0e-08 67.4 263 22.1
GSVIVG01024451001 Vitis vinifera HOM05D000526 ORTHO05D000956 1.0e-08 67.4 264 23.1
Actinidia13779 Actinidia chinensis HOM05D007125 ORTHO05D008766 1.3e-08 67.0 85 44.7
Eucgr.H00801 Eucalyptus grandis HOM05D000836 ORTHO05D000709 1.7e-08 66.6 261 21.5
MBI11_g43875_MAGBIO Magnolia biondii HOM05D000526 ORTHO05D002053 1.7e-08 66.6 256 20.7
Potri.016G068700 Populus trichocarpa HOM05D000526 ORTHO05D000956 3.9e-08 65.5 261 21.1
TAR627G0296 Trochodendron aralioides HOM05D004669 ORTHO05D005767 3.9e-08 65.5 238 22.3
PSO210G7136 Papaver somniferum HOM05D000526 ORTHO05D000956 5.0e-08 65.1 287 20.6
PGSC0003DMG400018492 Solanum tuberosum HOM05D000526 ORTHO05D000956 5.0e-08 65.1 260 23.1
Lalb_Chr03g0042981 Lupinus albus HOM05D007125 ORTHO05D008766 8.6e-08 64.3 90 41.1
Actinidia34298 Actinidia chinensis HOM05D000526 ORTHO05D000956 1.1e-07 63.9 307 21.2
Nn1g01280 Nelumbo nucifera HOM05D000526 ORTHO05D002053 1.1e-07 63.9 250 21.2
CANSAT01G1890 Cannabis sativa HOM05D000526 ORTHO05D000956 1.9e-07 63.2 260 21.9
PGSC0003DMG400000540 Solanum tuberosum HOM05D000526 ORTHO05D000956 2.5e-07 62.8 307 20.2
ATR0794G100 Amborella trichopoda HOM05D000836 ORTHO05D000709 3.3e-07 62.4 220 24.1
Gohir.A09G050300 Gossypium hirsutum HOM05D000526 ORTHO05D000956 5.6e-07 61.6 306 20.3
A02p21580 Brassica napus HOM05D000526 ORTHO05D000956 7.3e-07 61.2 274 21.9
A02p21660 Brassica napus HOM05D000526 ORTHO05D000956 7.3e-07 61.2 274 21.9
A02p21740 Brassica napus HOM05D000526 ORTHO05D000956 7.3e-07 61.2 274 21.9
Cc01_g17100 Coffea canephora HOM05D000836 ORTHO05D000709 9.5e-07 60.8 257 20.2
Solyc03g096870.3 Solanum lycopersicum HOM05D000526 ORTHO05D000956 9.5e-07 60.8 307 19.9
Sopen03g027620 Solanum pennellii HOM05D000526 ORTHO05D000956 9.5e-07 60.8 307 19.9
ECA233G4265 Erigeron canadensis HOM05D000526 ORTHO05D000956 1.2e-06 60.5 308 19.8
MD15G1145100 Malus domestica HOM05D000836 ORTHO05D000709 1.2e-06 60.5 257 23.0
Nitab4.5_0005880g0030 Nicotiana tabacum HOM05D000526 ORTHO05D000956 1.2e-06 60.5 256 20.7
PRCOL_00002272 Prasinoderma coloniale HOM05D037949 ORTHO05D034420 1.2e-06 60.5 170 28.8
Prupe.4G084200 Prunus persica HOM05D004841 ORTHO05D005874 2.1e-06 59.7 194 26.3
Solyc08g005420.3 Solanum lycopersicum HOM05D000526 ORTHO05D000956 2.1e-06 59.7 260 22.3
CSS0043716 Camellia sinensis var. sinensis HOM05D000836 ORTHO05D000709 2.8e-06 59.3 244 24.2
HanXRQChr10g0300961 Helianthus annuus HOM05D000526 ORTHO05D000956 2.8e-06 59.3 308 19.8
Sopen08g001460 Solanum pennellii HOM05D000526 ORTHO05D000956 2.8e-06 59.3 260 22.3
AagrBONN_evm.TU.Sc2ySwM_362.2826 Anthoceros agrestis HOM05D014975 ORTHO05D016505 3.6e-06 58.9 155 26.5
BraA02t07176Z Brassica rapa HOM05D000526 ORTHO05D000956 3.6e-06 58.9 307 21.2
Cre01.g010880 Chlamydomonas reinhardtii HOM05D009332 ORTHO05D011893 4.7e-06 58.5 157 26.1
HanXRQChr15g0486011 Helianthus annuus HOM05D000526 ORTHO05D000956 4.7e-06 58.5 259 20.5
Peaxi162Scf00153g01716 Petunia axillaris HOM05D003335 ORTHO05D003853 4.7e-06 58.5 283 23.7
MD02G1040200 Malus domestica HOM05D000836 ORTHO05D000709 6.1e-06 58.2 257 21.8
GSVIVG01034157001 Vitis vinifera HOM05D004841 ORTHO05D005874 8.0e-06 57.8 140 31.4


User provided reference genes

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