Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c3_16950 Physcomitrium patens HOM05D003674 ORTHO05D004226 0.0e+00 1308.1 671 100.0
Pp3c18_10190 Physcomitrium patens HOM05D003674 ORTHO05D004226 8.3e-163 578.2 595 50.4
Pp3c1_28370 Physcomitrium patens HOM05D003674 ORTHO05D004226 2.4e-162 576.6 592 51.9
Pp3c2_10230 Physcomitrium patens HOM05D003674 ORTHO05D004226 1.2e-161 574.3 615 51.4
Pp3c14_20770 Physcomitrium patens HOM05D003674 ORTHO05D004226 1.6e-161 573.9 593 51.8
Pp3c19_18680 Physcomitrium patens HOM05D003674 ORTHO05D004226 6.0e-161 572.0 588 50.5
Pp3c21_11410 Physcomitrium patens HOM05D003674 ORTHO05D004226 7.8e-161 571.6 590 50.7
Mapoly0062s0036 Marchantia polymorpha HOM05D003674 ORTHO05D004226 2.3e-136 490.3 609 44.8
Mapoly0050s0061 Marchantia polymorpha HOM05D003674 ORTHO05D004226 1.1e-117 428.3 597 41.4
Pp3c1_6270 Physcomitrium patens HOM05D003674 ORTHO05D004226 4.4e-79 300.1 601 33.4
Pp3c1_6272 Physcomitrium patens HOM05D003674 ORTHO05D004226 4.4e-79 300.1 601 33.4
Pp3c15_12230 Physcomitrium patens HOM05D003674 ORTHO05D004226 1.1e-74 285.4 602 31.9
Os01g0678500 Oryza sativa ssp. japonica HOM05D003674 ORTHO05D004226 1.7e-70 271.6 594 30.6
AagrBONN_evm.TU.Sc2ySwM_344.5080 Anthoceros agrestis HOM05D003674 ORTHO05D004226 3.7e-70 270.4 636 30.0
Mapoly0002s0274 Marchantia polymorpha HOM05D003674 ORTHO05D004226 1.4e-69 268.5 607 30.5
EL10Ac9g20767 Beta vulgaris HOM05D003674 ORTHO05D004226 3.5e-68 263.8 604 30.1
MD17G1240200 Malus domestica HOM05D003674 ORTHO05D004226 8.0e-65 252.7 602 30.2
FvH4_6g26210 Fragaria vesca HOM05D003674 ORTHO05D004226 1.0e-64 252.3 600 30.5
RcHm_v2.0_Chr2g0126531 Rosa chinensis HOM05D003674 ORTHO05D004226 1.0e-64 252.3 599 30.7
TAR624G0345 Trochodendron aralioides HOM05D003674 ORTHO05D004226 1.0e-64 252.3 608 30.1
RcHm_v2.0_Chr2g0126551 Rosa chinensis HOM05D003674 ORTHO05D004226 3.1e-64 250.8 598 30.1
GSVIVG01020549001 Vitis vinifera HOM05D003674 ORTHO05D004226 3.1e-64 250.8 601 29.8
Sc12g0003090 Simmondsia chinensis HOM05D003674 ORTHO05D004226 5.2e-64 250.0 601 29.3
Dinv23635 Davidia involucrata HOM05D003674 ORTHO05D004226 2.6e-63 247.7 600 30.5
Peaxi162Scf00132g00119 Petunia axillaris HOM05D003674 ORTHO05D004226 3.4e-63 247.3 616 28.7
THA.LOC104826033 Tarenaya hassleriana HOM05D003674 ORTHO05D004226 7.5e-63 246.1 609 29.6
Lsat_1_v5_gn_4_66721 Lactuca sativa HOM05D003674 ORTHO05D004226 1.7e-62 245.0 599 28.9
MD09G1247300 Malus domestica HOM05D003674 ORTHO05D004226 1.7e-62 245.0 603 29.5
ECA234G3736 Erigeron canadensis HOM05D003674 ORTHO05D004226 2.9e-62 244.2 603 30.0
AL6G49310 Arabidopsis lyrata HOM05D003674 ORTHO05D004226 3.7e-62 243.8 602 30.6
CiPaw.03G177300 Carya illinoinensis HOM05D003674 ORTHO05D004226 3.7e-62 243.8 608 28.9
CAN.G248.4 Capsicum annuum HOM05D003674 ORTHO05D004226 4.9e-62 243.4 603 28.2
Ciclev10014388m.g Citrus clementina HOM05D003674 ORTHO05D004226 4.1e-61 240.4 605 29.9
Sp6g03570 Schrenkiella parvula HOM05D003674 ORTHO05D004226 4.1e-61 240.4 601 29.5
CSS0035927 Camellia sinensis var. sinensis HOM05D003674 ORTHO05D004226 5.4e-61 240.0 602 29.2
HanXRQChr10g0297111 Helianthus annuus HOM05D003674 ORTHO05D004226 5.4e-61 240.0 601 29.6
Actinidia11076 Actinidia chinensis HOM05D003674 ORTHO05D004226 7.0e-61 239.6 605 29.1
AT4G03560 Arabidopsis thaliana HOM05D003674 ORTHO05D004226 9.2e-61 239.2 601 29.5
Carub.0006s3351 Capsella rubella HOM05D003674 ORTHO05D004226 2.0e-60 238.0 601 29.3
DCAR_013010 Daucus carota HOM05D003674 ORTHO05D004226 2.0e-60 238.0 603 29.0
Solyc07g053970.3 Solanum lycopersicum HOM05D003674 ORTHO05D004226 2.0e-60 238.0 621 28.2
BolC9t53217H Brassica oleracea HOM05D003674 ORTHO05D004226 4.6e-60 236.9 599 28.9
SalBow1G0286 Salvia bowleyana HOM05D003674 ORTHO05D004226 6.0e-60 236.5 607 29.5
Oeu017490.2 Olea europaea HOM05D003674 ORTHO05D004226 7.8e-60 236.1 593 29.7
BraA09t35927Z Brassica rapa HOM05D003674 ORTHO05D004226 1.0e-59 235.7 602 28.9
Lalb_Chr22g0356561 Lupinus albus HOM05D003674 ORTHO05D004226 1.0e-59 235.7 600 27.5
HPP92_008135 Vanilla planifolia HOM05D003674 ORTHO05D004226 1.0e-59 235.7 598 29.6
BcaB01g02542 Brassica carinata HOM05D003674 ORTHO05D004226 1.7e-59 235.0 605 28.8
BcaC04g23961 Brassica carinata HOM05D003674 ORTHO05D004226 2.3e-59 234.6 599 28.9
Lj3g0012901 Lotus japonicus HOM05D003674 ORTHO05D004226 3.0e-59 234.2 596 28.7
CARHR251990 Cardamine hirsuta HOM05D003674 ORTHO05D004226 3.9e-59 233.8 599 29.2
BcaC01g06668 Brassica carinata HOM05D003674 ORTHO05D004226 8.6e-59 232.6 604 28.8
A03p30360 Brassica napus HOM05D003674 ORTHO05D004226 8.6e-59 232.6 604 28.8
Glyma.12G204400 Glycine max HOM05D003674 ORTHO05D004226 8.6e-59 232.6 605 28.1
SalBow1G3138 Salvia bowleyana HOM05D003674 ORTHO05D004226 1.1e-58 232.3 619 29.4
Glyma.13G296900 Glycine max HOM05D003674 ORTHO05D004226 1.9e-58 231.5 640 27.2
Medtr2g090380 Medicago truncatula HOM05D003674 ORTHO05D004226 1.9e-58 231.5 598 27.3
Sopen07g027960 Solanum pennellii HOM05D003674 ORTHO05D004343 1.9e-58 231.5 598 27.8
Actinidia11032 Actinidia chinensis HOM05D003674 ORTHO05D004226 2.5e-58 231.1 599 28.9
DCAR_021245 Daucus carota HOM05D003674 ORTHO05D004226 4.3e-58 230.3 599 29.0
TPR.G6424 Trifolium pratense HOM05D003674 ORTHO05D004226 5.6e-58 229.9 598 27.4
Aqoxy4G00814 Aquilegia oxysepala HOM05D003674 ORTHO05D004226 7.3e-58 229.6 599 29.2
Psat5g272320 Pisum sativum HOM05D003674 ORTHO05D004226 7.3e-58 229.6 598 27.3
THA.LOC104801172 Tarenaya hassleriana HOM05D003674 ORTHO05D004226 7.3e-58 229.6 668 28.4
COL.COLO4_30194 Corchorus olitorius HOM05D003674 ORTHO05D004226 1.2e-57 228.8 597 26.5
MBI06_g04180_MAGBIO Magnolia biondii HOM05D003674 ORTHO05D004226 1.2e-57 228.8 583 30.0
unitig_749.g13960 Utricularia gibba HOM05D003674 ORTHO05D004226 1.2e-57 228.8 611 28.3
Potri.013G131100 Populus trichocarpa HOM05D003674 ORTHO05D004226 1.6e-57 228.4 605 27.9
VMungo0464G1662 Vigna mungo HOM05D003674 ORTHO05D004226 2.1e-57 228.0 595 26.2
Cc05_g07170 Coffea canephora HOM05D003674 ORTHO05D004226 2.8e-57 227.6 604 28.3
Phvul.004G108300 Phaseolus vulgaris HOM05D003674 ORTHO05D004226 2.8e-57 227.6 595 26.1
arahy.Tifrunner.gnm1.ann1.1TZ75T Arachis hypogaea HOM05D003674 ORTHO05D004226 4.7e-57 226.9 600 26.8
BcaB01g01906 Brassica carinata HOM05D003674 ORTHO05D004226 6.2e-57 226.5 599 28.7
Cpa.g.sc848.1 Carica papaya HOM05D003674 ORTHO05D004226 6.2e-57 226.5 576 28.8
Aa31LG5G2940 Aethionema arabicum HOM05D003674 ORTHO05D004226 1.1e-56 225.7 612 28.4
Rhsim06G0142000 Rhododendron simsii HOM05D003674 ORTHO05D004226 1.4e-56 225.3 580 29.8
BolC3t15980H Brassica oleracea HOM05D003674 ORTHO05D004226 3.1e-56 224.2 604 28.6
MELO3C018734.2 Cucumis melo HOM05D003674 ORTHO05D004226 3.1e-56 224.2 605 28.8
TWI75G1008 Tripterygium wilfordii HOM05D003674 ORTHO05D004226 3.1e-56 224.2 544 30.5
BraA03t12218Z Brassica rapa HOM05D003674 ORTHO05D004226 4.0e-56 223.8 611 28.2
C03p36660 Brassica napus HOM05D003674 ORTHO05D004226 5.2e-56 223.4 606 28.7
Cfa014617 Carpinus fangiana HOM05D003674 ORTHO05D004226 8.9e-56 222.6 598 27.3
FAN09G3196 Fragaria x ananassa HOM05D000230 ORTHO05D004226 8.9e-56 222.6 574 29.4
PSO832G0572 Papaver somniferum HOM05D003674 ORTHO05D004226 8.9e-56 222.6 601 28.3
Duzib132G0159 Durio zibethinus HOM05D003674 ORTHO05D004226 1.2e-55 222.2 598 27.4
CsaV3_7G004450 Cucumis sativus L. HOM05D003674 ORTHO05D004226 2.6e-55 221.1 605 28.4
Thecc.02G180000 Theobroma cacao HOM05D003674 ORTHO05D004226 4.4e-55 220.3 597 26.6
DCAR_013011 Daucus carota HOM05D003674 ORTHO05D004226 5.8e-55 219.9 623 29.1
Sed0011332 Sechium edule HOM05D003674 ORTHO05D004226 1.3e-54 218.8 593 28.3
Prupe.3G138600 Prunus persica HOM05D003674 ORTHO05D004226 1.7e-54 218.4 596 28.2
PSO210G7128 Papaver somniferum HOM05D003674 ORTHO05D004226 2.9e-54 217.6 599 28.0
AUR62037356 Chenopodium quinoa HOM05D003674 ORTHO05D004226 3.7e-54 217.2 596 27.9
Hund01095 Selenicereus undatus HOM05D003674 ORTHO05D004226 8.3e-54 216.1 602 28.6
Nitab4.5_0004344g0030 Nicotiana tabacum HOM05D003674 ORTHO05D004226 1.9e-53 214.9 594 27.4
HanXRQChr06g0179591 Helianthus annuus HOM05D003674 ORTHO05D004226 2.4e-53 214.5 597 27.8
arahy.Tifrunner.gnm1.ann1.1DM7TY Arachis hypogaea HOM05D003674 ORTHO05D004226 4.1e-53 213.8 629 25.9
Thhalv10029480m.g Eutrema salsugineum HOM05D003674 ORTHO05D004226 2.1e-52 211.5 598 28.3
Eucgr.K01030 Eucalyptus grandis HOM05D003674 ORTHO05D004226 2.7e-52 211.1 602 27.6
PSO675G3793 Papaver somniferum HOM05D003674 ORTHO05D004226 7.8e-52 209.5 603 28.4
Gohir.A03G156500 Gossypium hirsutum HOM05D003674 ORTHO05D004226 3.0e-51 207.6 598 26.4
PGR142G3148 Punica granatum HOM05D003674 ORTHO05D004226 3.0e-51 207.6 600 27.2
QL08p038784 Quercus lobata HOM05D003674 ORTHO05D004226 3.9e-51 207.2 648 25.9
Eucgr.K01031 Eucalyptus grandis HOM05D003674 ORTHO05D004226 5.1e-51 206.8 604 27.8
Gorai.005G201400 Gossypium raimondii HOM05D003674 ORTHO05D004226 1.1e-50 205.7 598 26.3
A09p02830 Brassica napus HOM05D000230 ORTHO05D000176 9.5e-50 202.6 592 27.4
CSS0020583 Camellia sinensis var. sinensis HOM05D003674 ORTHO05D004226 3.6e-49 200.7 598 26.4
Zm00001eb360320 Zea mays HOM05D003674 ORTHO05D004226 3.6e-49 200.7 451 30.4
Eucgr.K01029 Eucalyptus grandis HOM05D003674 ORTHO05D004226 6.2e-49 199.9 604 27.8
QL08p038841 Quercus lobata HOM05D003674 ORTHO05D004226 6.2e-49 199.9 656 26.5
ClCG07G002890 Citrullus lanatus HOM05D003674 ORTHO05D004226 4.0e-48 197.2 576 27.6
SGA_v2.0_scaffold322G48614 Striga asiatica HOM05D003674 ORTHO05D004226 3.4e-47 194.1 596 26.0
CSS0005418 Camellia sinensis var. sinensis HOM05D003674 ORTHO05D004226 1.7e-46 191.8 593 26.5
Ah.01g004260 Amaranthus hybridus HOM05D003674 ORTHO05D004226 2.2e-46 191.4 579 27.1
DCAR_019181 Daucus carota HOM05D003674 ORTHO05D004226 3.7e-46 190.7 602 27.2
ATR0737G001 Amborella trichopoda HOM05D003674 ORTHO05D004226 9.2e-45 186.0 397 31.5
Sabra13G0110800 Salix brachista HOM05D003674 ORTHO05D004226 6.0e-44 183.3 498 27.1
Sabra13G0110700 Salix brachista HOM05D003674 ORTHO05D004226 5.1e-43 180.3 686 24.1
CiPaw.04G126100 Carya illinoinensis HOM05D003674 ORTHO05D004226 1.5e-42 178.7 501 27.1
MSTRG.14342 Avicennia marina HOM05D003674 ORTHO05D004226 4.3e-42 177.2 507 27.0
FAN05G0320 Fragaria x ananassa HOM05D000230 ORTHO05D000176 2.8e-41 174.5 556 26.8
Nitab4.5_0000512g0020 Nicotiana tabacum HOM05D003674 ORTHO05D004226 4.7e-41 173.7 481 26.6
Oeu017491.1 Olea europaea HOM05D003674 ORTHO05D004226 2.4e-40 171.4 421 29.5
CAN.G1472.4 Capsicum annuum HOM05D003674 ORTHO05D004226 4.0e-40 170.6 452 27.2
Manes.13G146400 Manihot esculenta HOM05D003674 ORTHO05D004226 4.4e-39 167.2 422 28.2
AUR62042592 Chenopodium quinoa HOM05D003674 ORTHO05D004226 6.4e-38 163.3 595 25.7
Oeu058850.1 Olea europaea HOM05D003674 ORTHO05D004226 7.1e-37 159.8 408 28.4
QL08p038913 Quercus lobata HOM05D003674 ORTHO05D004226 2.1e-36 158.3 729 23.2
Haze_13165 Corylus avellana HOM05D003674 ORTHO05D004226 1.7e-35 155.2 535 24.7
Migut.H01178 Erythranthe guttata HOM05D003674 ORTHO05D004226 3.9e-35 154.1 453 27.2
vmacro12305 Vaccinium macrocarpon HOM05D003674 ORTHO05D004226 1.4e-32 145.6 413 27.8
CBR_g54426 Chara braunii HOM05D003674 ORTHO05D004226 5.8e-31 140.2 377 27.3
Peaxi162Scf00132g00117 Petunia axillaris HOM05D003674 ORTHO05D004226 7.6e-31 139.8 538 25.8
Nn1g06551 Nelumbo nucifera HOM05D003674 ORTHO05D004226 9.9e-31 139.4 326 30.7
Hma1.2p1_1937F.1_g308270 Hydrangea macrophylla HOM05D003674 ORTHO05D004226 2.2e-30 138.3 308 31.8
TAR624G0523 Trochodendron aralioides HOM05D003674 ORTHO05D004226 2.9e-30 137.9 304 31.9
FAN02G2237 Fragaria x ananassa HOM05D003674 ORTHO05D004226 3.2e-29 134.4 613 23.7
Gohir.D02G179632 Gossypium hirsutum HOM05D003674 ORTHO05D004226 4.2e-29 134.0 370 28.1
TAR624G0173 Trochodendron aralioides HOM05D003674 ORTHO05D004226 9.0e-24 116.3 295 28.1
CDE06G1319 Ceratophyllum demersum HOM05D003674 ORTHO05D004226 1.4e-21 109.0 242 31.8
SHI10407 Sapria himalayana HOM05D003674 ORTHO05D004226 1.8e-19 102.1 240 31.7
Ca_01498_v3 Cicer arietinum L. HOM05D003674 ORTHO05D004226 3.0e-19 101.3 178 30.9
Hma1.2p1_2586F.1_g324940 Hydrangea macrophylla HOM05D003674 ORTHO05D004226 3.3e-18 97.8 158 34.2
MSTRG.14332 Avicennia marina HOM05D003674 ORTHO05D004226 4.0e-16 90.9 164 31.7
MSTRG.14334 Avicennia marina HOM05D003674 ORTHO05D004226 1.1e-13 82.8 210 29.5
Hma1.2p1_1836F.1_g304720 Hydrangea macrophylla HOM05D003674 ORTHO05D004226 2.7e-12 78.2 123 35.8
Gohir.D02G179566 Gossypium hirsutum HOM05D003674 ORTHO05D004226 5.1e-11 73.9 164 29.3
CBR_g41145 Chara braunii HOM05D003674 ORTHO05D004226 8.7e-11 73.2 159 27.0
Lsat_1_v5_gn_4_64281 Lactuca sativa HOM05D003674 ORTHO05D004226 3.3e-10 71.2 140 30.0
MSTRG.14339 Avicennia marina HOM05D003674 ORTHO05D004226 5.7e-10 70.5 123 35.0
Nn1g06549 Nelumbo nucifera HOM05D003674 ORTHO05D004226 2.8e-09 68.2 102 37.3
ATR0737G184 Amborella trichopoda HOM05D003674 ORTHO05D004226 1.4e-08 65.9 93 38.7
MSTRG.14344 Avicennia marina HOM05D003674 ORTHO05D004226 1.4e-08 65.9 120 34.2
CiPaw.04G126200 Carya illinoinensis HOM05D003674 ORTHO05D004226 1.8e-08 65.5 93 38.7
Ca_01497_v3 Cicer arietinum L. HOM05D003674 ORTHO05D004226 4.1e-08 64.3 114 36.0
vmacro12304 Vaccinium macrocarpon HOM05D003674 ORTHO05D004226 4.1e-08 64.3 175 29.1
SEGI_19203 Sequoiadendron giganteum HOM05D003674 ORTHO05D004226 5.8e-07 60.5 98 34.7
Cre12.g532350 Chlamydomonas reinhardtii HOM05D009333 ORTHO05D011489 2.9e-06 58.2 153 28.1
Migut.H01179 Erythranthe guttata HOM05D003674 ORTHO05D004226 2.9e-06 58.2 119 31.9
Hma1.2p1_1145F.1_g261410 Hydrangea macrophylla HOM05D003674 ORTHO05D004226 6.5e-06 57.0 92 37.0
Nitab4.5_0000512g0010 Nicotiana tabacum HOM05D003674 ORTHO05D004226 8.4e-06 56.6 111 30.6
SEGI_23599 Sequoiadendron giganteum HOM05D003674 ORTHO05D004226 8.4e-06 56.6 75 41.3


User provided reference genes

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