Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c3_16820 Physcomitrium patens HOM05D003027 ORTHO05D003455 0.0e+00 1837.0 971 100.0
Pp3c13_15030 Physcomitrium patens HOM05D003027 ORTHO05D003455 0.0e+00 1211.1 969 69.3
Mapoly0130s0030 Marchantia polymorpha HOM05D003027 ORTHO05D003455 1.7e-79 302.0 843 35.7
AagrBONN_evm.TU.Sc2ySwM_344.4987 Anthoceros agrestis HOM05D003027 ORTHO05D003455 1.4e-54 219.2 683 33.1
Dinv20764 Davidia involucrata HOM05D003027 ORTHO05D003455 1.5e-51 209.1 684 32.5
Actinidia17700 Actinidia chinensis HOM05D003027 ORTHO05D003455 5.6e-51 207.2 678 31.1
TWI77G0499 Tripterygium wilfordii HOM05D003027 ORTHO05D003455 3.6e-50 204.5 671 32.2
QL07p012799 Quercus lobata HOM05D003027 ORTHO05D003455 4.0e-49 201.1 681 32.3
CiPaw.09G050600 Carya illinoinensis HOM05D003027 ORTHO05D003455 2.6e-48 198.4 614 33.4
QL07p012681 Quercus lobata HOM05D003027 ORTHO05D003455 2.6e-48 198.4 681 32.3
Aa31LG3G1070 Aethionema arabicum HOM05D003027 ORTHO05D003455 5.8e-48 197.2 702 30.9
Dinv36122 Davidia involucrata HOM05D003027 ORTHO05D003455 1.3e-47 196.1 684 30.8
CAN.G960.76 Capsicum annuum HOM05D003027 ORTHO05D003455 8.4e-47 193.4 612 32.5
Migut.J01624 Erythranthe guttata HOM05D003027 ORTHO05D003455 8.4e-47 193.4 692 32.1
Sed0011831 Sechium edule HOM05D003027 ORTHO05D003455 8.4e-47 193.4 750 30.9
Gorai.013G000800 Gossypium raimondii HOM05D003027 ORTHO05D003455 1.4e-46 192.6 700 31.6
Cc06_g20180 Coffea canephora HOM05D003027 ORTHO05D003455 3.2e-46 191.4 734 30.2
Medtr7g088890 Medicago truncatula HOM05D003027 ORTHO05D003455 3.2e-46 191.4 657 32.1
TWI74G0015 Tripterygium wilfordii HOM05D003027 ORTHO05D003455 4.2e-46 191.0 633 32.2
CSS0006760 Camellia sinensis var. sinensis HOM05D003027 ORTHO05D003455 7.1e-46 190.3 681 31.7
CsaV3_3G039880 Cucumis sativus L. HOM05D003027 ORTHO05D003455 7.1e-46 190.3 728 30.6
Thhalv10016317m.g Eutrema salsugineum HOM05D003027 ORTHO05D003455 7.1e-46 190.3 690 31.0
THA.LOC104824380 Tarenaya hassleriana HOM05D003027 ORTHO05D003455 9.3e-46 189.9 682 30.8
Cfa019972 Carpinus fangiana HOM05D003027 ORTHO05D003455 1.2e-45 189.5 679 31.8
Phvul.001G119300 Phaseolus vulgaris HOM05D003027 ORTHO05D003455 1.6e-45 189.1 816 29.9
Lj1A1084T71 Lonicera japonica HOM05D003027 ORTHO05D003455 3.5e-45 188.0 691 31.8
Sp4g23270 Schrenkiella parvula HOM05D003027 ORTHO05D003455 3.5e-45 188.0 684 30.8
CSS0013065 Camellia sinensis var. sinensis HOM05D003027 ORTHO05D003455 4.6e-45 187.6 681 31.6
CSS0031087 Camellia sinensis var. sinensis HOM05D003027 ORTHO05D003455 1.3e-44 186.0 627 31.6
Glyma.19G126800 Glycine max HOM05D003027 ORTHO05D003455 2.3e-44 185.3 680 29.9
MELO3C009730.2 Cucumis melo HOM05D003027 ORTHO05D003455 3.0e-44 184.9 779 30.2
RcHm_v2.0_Chr4g0433931 Rosa chinensis HOM05D003027 ORTHO05D003455 3.0e-44 184.9 681 31.1
PGR042G3138 Punica granatum HOM05D003027 ORTHO05D003455 3.9e-44 184.5 681 31.1
SalBow6G5171 Salvia bowleyana HOM05D003027 ORTHO05D003455 3.9e-44 184.5 761 28.9
vmacro08992 Vaccinium macrocarpon HOM05D003027 ORTHO05D003455 3.9e-44 184.5 748 30.3
VMungo1383G0888 Vigna mungo HOM05D003027 ORTHO05D003455 5.1e-44 184.1 830 28.7
Haze_20266 Corylus avellana HOM05D003027 ORTHO05D003455 6.6e-44 183.7 668 32.0
MSTRG.26171 Avicennia marina HOM05D003027 ORTHO05D003455 8.7e-44 183.3 692 30.9
Lalb_Chr14g0365581 Lupinus albus HOM05D003027 ORTHO05D003455 1.1e-43 183.0 775 30.1
Gohir.A13G001500 Gossypium hirsutum HOM05D003027 ORTHO05D003455 1.5e-43 182.6 618 32.4
MBI19_g04333_MAGBIO Magnolia biondii HOM05D003027 ORTHO05D003455 1.9e-43 182.2 678 30.7
FAN07G2582 Fragaria x ananassa HOM05D003027 ORTHO05D003455 2.5e-43 181.8 682 31.8
SalBow1G6916 Salvia bowleyana HOM05D003027 ORTHO05D003455 2.5e-43 181.8 666 29.9
TAR623G0586 Trochodendron aralioides HOM05D003027 ORTHO05D003455 2.5e-43 181.8 686 29.9
ClCG10G016460 Citrullus lanatus HOM05D003027 ORTHO05D003455 3.3e-43 181.4 824 29.0
AT2G40950 Arabidopsis thaliana HOM05D003027 ORTHO05D003455 5.6e-43 180.6 677 30.3
MD07G1018800 Malus domestica HOM05D003027 ORTHO05D003455 7.3e-43 180.3 677 30.4
PSO339G5716 Papaver somniferum HOM05D003027 ORTHO05D003455 9.6e-43 179.9 627 30.6
PSO384G3381 Papaver somniferum HOM05D003027 ORTHO05D003455 9.6e-43 179.9 677 29.8
AL4G38920 Arabidopsis lyrata HOM05D003027 ORTHO05D003455 1.3e-42 179.5 676 30.2
Prupe.2G020400 Prunus persica HOM05D003027 ORTHO05D003455 1.6e-42 179.1 692 30.3
Carub.0004s2327 Capsella rubella HOM05D003027 ORTHO05D003455 2.1e-42 178.7 670 30.3
SGA_v2.0_scaffold69G23173 Striga asiatica HOM05D003027 ORTHO05D003455 2.8e-42 178.3 779 29.5
HanXRQChr03g0061511 Helianthus annuus HOM05D003027 ORTHO05D003455 3.6e-42 177.9 763 28.3
THA.LOC104803232 Tarenaya hassleriana HOM05D003027 ORTHO05D003455 3.6e-42 177.9 640 30.6
Thecc.05G123000 Theobroma cacao HOM05D003027 ORTHO05D003455 3.6e-42 177.9 618 31.6
Potri.006G034500 Populus trichocarpa HOM05D003027 ORTHO05D003455 8.1e-42 176.8 658 31.3
Atru.chr1.1410 Acer truncatum HOM05D003027 ORTHO05D003455 1.8e-41 175.6 676 29.3
arahy.Tifrunner.gnm1.ann1.470EJV Arachis hypogaea HOM05D003027 ORTHO05D003455 2.4e-41 175.3 814 30.1
DCAR_020597 Daucus carota HOM05D003027 ORTHO05D003455 2.4e-41 175.3 632 30.7
Glyma.03G123200 Glycine max HOM05D003027 ORTHO05D003455 2.4e-41 175.3 690 30.0
Hma1.2p1_1246F.1_g270160 Hydrangea macrophylla HOM05D003027 ORTHO05D003455 2.4e-41 175.3 673 30.5
GSVIVG01025788001 Vitis vinifera HOM05D003027 ORTHO05D003455 2.4e-41 175.3 617 30.6
Ah.04g150710 Amaranthus hybridus HOM05D003027 ORTHO05D003455 3.1e-41 174.9 696 30.3
Gohir.D13G000900 Gossypium hirsutum HOM05D003027 ORTHO05D003455 3.1e-41 174.9 698 30.5
Lj1g0009474 Lotus japonicus HOM05D003027 ORTHO05D003455 3.1e-41 174.9 622 31.2
Sc25g0005470 Simmondsia chinensis HOM05D003027 ORTHO05D003455 4.0e-41 174.5 627 30.0
TWI53G2142 Tripterygium wilfordii HOM05D003027 ORTHO05D003455 5.3e-41 174.1 660 31.4
Sabra06G0023000 Salix brachista HOM05D003027 ORTHO05D003455 6.9e-41 173.7 724 29.6
C04p02350 Brassica napus HOM05D003027 ORTHO05D003455 9.0e-41 173.3 611 30.9
BolC4t21881H Brassica oleracea HOM05D003027 ORTHO05D003455 9.0e-41 173.3 611 30.9
FvH4_4g26350 Fragaria vesca HOM05D003027 ORTHO05D003455 9.0e-41 173.3 612 31.9
Manes.09G000300 Manihot esculenta HOM05D003027 ORTHO05D003455 9.0e-41 173.3 686 30.0
COL.COLO4_19389 Corchorus olitorius HOM05D003027 ORTHO05D003455 1.5e-40 172.6 734 29.0
FAN12G2249 Fragaria x ananassa HOM05D003027 ORTHO05D003455 1.5e-40 172.6 612 32.0
PGSC0003DMG400007175 Solanum tuberosum HOM05D003027 ORTHO05D003455 2.0e-40 172.2 760 29.6
arahy.Tifrunner.gnm1.ann1.1QMW5J Arachis hypogaea HOM05D003027 ORTHO05D003455 2.6e-40 171.8 814 30.1
DCAR_013537 Daucus carota HOM05D003027 ORTHO05D003455 2.6e-40 171.8 622 30.7
CANSAT64G1028 Cannabis sativa HOM05D003027 ORTHO05D003455 3.4e-40 171.4 737 30.0
Duzib128G0339 Durio zibethinus HOM05D003027 ORTHO05D003455 3.4e-40 171.4 769 29.5
FAN12G3806 Fragaria x ananassa HOM05D003027 ORTHO05D003455 3.4e-40 171.4 612 32.2
Aqoxy1G00075 Aquilegia oxysepala HOM05D003027 ORTHO05D003455 4.4e-40 171.0 684 29.8
Sopen10g028950 Solanum pennellii HOM05D003027 ORTHO05D003455 4.4e-40 171.0 805 29.6
Ciclev10011169m.g Citrus clementina HOM05D003027 ORTHO05D003455 5.8e-40 170.6 766 28.7
BcaC02g12863 Brassica carinata HOM05D003027 ORTHO05D003455 9.9e-40 169.9 614 28.8
Lalb_Chr22g0357801 Lupinus albus HOM05D003027 ORTHO05D003455 9.9e-40 169.9 818 29.5
Sabra16G0035700 Salix brachista HOM05D003027 ORTHO05D003455 9.9e-40 169.9 767 30.2
Migut.K00152 Erythranthe guttata HOM05D003027 ORTHO05D003455 1.3e-39 169.5 821 28.7
MSTRG.19782 Avicennia marina HOM05D003027 ORTHO05D003455 1.7e-39 169.1 832 29.8
CARHR136060 Cardamine hirsuta HOM05D003027 ORTHO05D003455 1.7e-39 169.1 688 29.4
COL.COLO4_26642 Corchorus olitorius HOM05D003027 ORTHO05D003455 2.2e-39 168.7 640 29.8
SGA_v2.0_scaffold66G22290 Striga asiatica HOM05D003027 ORTHO05D003455 2.2e-39 168.7 626 31.5
Nitab4.5_0000869g0140 Nicotiana tabacum HOM05D003027 ORTHO05D003455 2.9e-39 168.3 670 31.0
Hund24551 Selenicereus undatus HOM05D003027 ORTHO05D003455 2.9e-39 168.3 682 30.8
SEGI_25646 Sequoiadendron giganteum HOM05D003027 ORTHO05D003455 4.9e-39 167.5 609 29.6
FAN22G1384 Fragaria x ananassa HOM05D003027 ORTHO05D003455 8.4e-39 166.8 773 29.9
CAN.G569.64 Capsicum annuum HOM05D003027 ORTHO05D003455 1.1e-38 166.4 669 30.9
MSTRG.6308 Avicennia marina HOM05D003027 ORTHO05D003455 1.4e-38 166.0 669 29.3
A04p31300 Brassica napus HOM05D003027 ORTHO05D003455 1.4e-38 166.0 606 29.7
Eucgr.A02199 Eucalyptus grandis HOM05D003027 ORTHO05D003455 1.4e-38 166.0 824 29.0
Oeu044242.3 Olea europaea HOM05D003027 ORTHO05D003455 1.4e-38 166.0 659 30.2
CiPaw.10G042900 Carya illinoinensis HOM05D003027 ORTHO05D003455 1.9e-38 165.6 681 29.8
Manes.08G062800 Manihot esculenta HOM05D003027 ORTHO05D003455 1.9e-38 165.6 776 28.9
Potri.016G032400 Populus trichocarpa HOM05D003027 ORTHO05D003455 1.9e-38 165.6 764 30.4
BolC4t28375H Brassica oleracea HOM05D003027 ORTHO05D003455 4.2e-38 164.5 604 29.3
Peaxi162Scf00076g00222 Petunia axillaris HOM05D003027 ORTHO05D003455 4.2e-38 164.5 740 29.9
Sed0023009 Sechium edule HOM05D003027 ORTHO05D003455 4.2e-38 164.5 827 28.8
TPR.G22687 Trifolium pratense HOM05D003027 ORTHO05D003455 5.4e-38 164.1 822 28.3
C04p68700 Brassica napus HOM05D003027 ORTHO05D003455 7.1e-38 163.7 608 28.8
BraA04t18587Z Brassica rapa HOM05D003027 ORTHO05D003455 1.6e-37 162.5 606 29.4
HPP92_002082 Vanilla planifolia HOM05D003027 ORTHO05D003455 1.6e-37 162.5 618 29.8
Ah.13g077130 Amaranthus hybridus HOM05D003027 ORTHO05D003455 2.1e-37 162.2 690 29.4
HanXRQChr13g0388001 Helianthus annuus HOM05D003027 ORTHO05D003455 3.5e-37 161.4 666 30.9
Lalb_Chr24g0400521 Lupinus albus HOM05D003027 ORTHO05D003455 4.6e-37 161.0 817 29.4
Os05g0411300 Oryza sativa ssp. japonica HOM05D003027 ORTHO05D003455 2.3e-36 158.7 631 29.3
Sp5g05900 Schrenkiella parvula HOM05D003027 ORTHO05D003455 3.0e-36 158.3 612 28.1
PGSC0003DMG400039820 Solanum tuberosum HOM05D003027 ORTHO05D003455 3.9e-36 157.9 618 29.3
ECA248G3907 Erigeron canadensis HOM05D003027 ORTHO05D003455 5.1e-36 157.5 656 29.6
SGA_v2.0_scaffold106G30539 Striga asiatica HOM05D003027 ORTHO05D003455 5.1e-36 157.5 613 28.5
Nitab4.5_0005963g0050 Nicotiana tabacum HOM05D003027 ORTHO05D003455 6.6e-36 157.1 644 31.2
Aa31LG10G11460 Aethionema arabicum HOM05D003027 ORTHO05D003455 1.1e-35 156.4 667 28.9
EL10Ac3g07277 Beta vulgaris HOM05D003027 ORTHO05D003455 1.5e-35 156.0 841 28.1
ATR0307G054 Amborella trichopoda HOM05D003027 ORTHO05D003455 2.5e-35 155.2 622 29.6
CDE08G0069 Ceratophyllum demersum HOM05D003027 ORTHO05D003455 4.3e-35 154.5 624 28.4
FAN17G2150 Fragaria x ananassa HOM05D003027 ORTHO05D003455 1.3e-34 152.9 766 30.0
Os07g0644100 Oryza sativa ssp. japonica HOM05D003027 ORTHO05D003455 2.1e-34 152.1 616 29.4
Lj2A408G49 Lonicera japonica HOM05D003027 ORTHO05D003455 2.8e-34 151.8 696 28.4
Carub.0003s1003 Capsella rubella HOM05D003027 ORTHO05D003455 3.6e-34 151.4 623 29.9
unitig_744.g24169 Utricularia gibba HOM05D003027 ORTHO05D003455 1.4e-33 149.4 696 28.3
THA.LOC104816495 Tarenaya hassleriana HOM05D003027 ORTHO05D003455 2.4e-33 148.7 643 29.2
Duzib106G1517 Durio zibethinus HOM05D003027 ORTHO05D003455 5.3e-33 147.5 772 28.6
Zm00001eb110370 Zea mays HOM05D003027 ORTHO05D003455 1.2e-32 146.4 648 29.6
Thhalv10005827m.g Eutrema salsugineum HOM05D003027 ORTHO05D003455 2.6e-32 145.2 612 28.6
AL3G22300 Arabidopsis lyrata HOM05D003027 ORTHO05D003455 3.4e-32 144.8 667 28.8
Ca_08358_v3 Cicer arietinum L. HOM05D003027 ORTHO05D003455 3.4e-32 144.8 801 28.2
AUR62030278 Chenopodium quinoa HOM05D003027 ORTHO05D003455 5.8e-32 144.1 756 28.3
BcaC02g12742 Brassica carinata HOM05D003027 ORTHO05D003455 7.6e-32 143.7 614 28.0
Sopen04g025360 Solanum pennellii HOM05D003027 ORTHO05D003455 7.6e-32 143.7 609 30.0
Cpa.g.sc92.68 Carica papaya HOM05D003027 ORTHO05D003455 9.9e-32 143.3 674 27.0
unitig_21.g20679 Utricularia gibba HOM05D003027 ORTHO05D003455 1.7e-31 142.5 862 27.3
Oeu022988.1 Olea europaea HOM05D003027 ORTHO05D003455 2.2e-31 142.1 642 28.8
AT3G10800 Arabidopsis thaliana HOM05D003027 ORTHO05D003455 3.8e-31 141.4 673 28.1
BolC1t05352H Brassica oleracea HOM05D003027 ORTHO05D003455 8.4e-31 140.2 653 29.6
Lsat_1_v5_gn_5_157880 Lactuca sativa HOM05D003027 ORTHO05D003455 1.1e-30 139.8 806 26.8
Zm00001eb288060 Zea mays HOM05D003027 ORTHO05D003455 1.1e-30 139.8 755 27.9
Nitab4.5_0000123g0440 Nicotiana tabacum HOM05D003027 ORTHO05D003455 1.4e-30 139.4 793 28.5
HPP92_002076 Vanilla planifolia HOM05D003027 ORTHO05D003455 2.4e-30 138.7 598 28.3
Aa31LG3G3720 Aethionema arabicum HOM05D003027 ORTHO05D003455 9.3e-30 136.7 811 25.3
AUR62018385 Chenopodium quinoa HOM05D003027 ORTHO05D003455 3.5e-29 134.8 786 27.4
CDE08G1650 Ceratophyllum demersum HOM05D003027 ORTHO05D003455 1.3e-28 132.9 624 28.0
Nitab4.5_0004697g0100 Nicotiana tabacum HOM05D003027 ORTHO05D003455 1.3e-28 132.9 795 27.8
A09p34290 Brassica napus HOM05D003027 ORTHO05D003455 3.0e-28 131.7 670 28.8
CARHR085360 Cardamine hirsuta HOM05D003027 ORTHO05D003455 3.0e-28 131.7 718 28.4
CARHR166770 Cardamine hirsuta HOM05D003027 ORTHO05D003455 3.0e-28 131.7 610 27.5
Sp3g09120 Schrenkiella parvula HOM05D003027 ORTHO05D003455 6.7e-28 130.6 706 27.8
BraA09t38974Z Brassica rapa HOM05D003027 ORTHO05D003455 1.1e-27 129.8 670 28.7
AT3G56660 Arabidopsis thaliana HOM05D003027 ORTHO05D003455 7.4e-27 127.1 637 26.7
Carub.0005s2341 Capsella rubella HOM05D003027 ORTHO05D003455 9.6e-27 126.7 649 26.0
Thhalv10020207m.g Eutrema salsugineum HOM05D003027 ORTHO05D003455 1.6e-26 125.9 671 26.1
AL5G38030 Arabidopsis lyrata HOM05D003027 ORTHO05D003455 2.8e-26 125.2 656 27.1
BcaC02g09858 Brassica carinata HOM05D003027 ORTHO05D003455 9.0e-25 120.2 644 27.5
Peaxi162Scf00003g05235 Petunia axillaris HOM05D003027 ORTHO05D003455 9.0e-25 120.2 748 26.7
BraA01t04221Z Brassica rapa HOM05D003027 ORTHO05D003455 5.8e-24 117.5 632 25.8
C04p35840 Brassica napus HOM05D003027 ORTHO05D003455 1.7e-23 115.9 653 25.1
BolC4t25216H Brassica oleracea HOM05D003027 ORTHO05D003455 1.7e-23 115.9 653 25.1
CBR_g40793 Chara braunii HOM05D003027 ORTHO05D003455 3.8e-23 114.8 882 25.1
Psat0s1940g0120 Pisum sativum HOM05D003027 ORTHO05D003455 8.4e-23 113.6 791 27.1
BcaB02g08358 Brassica carinata HOM05D003027 ORTHO05D003455 5.5e-22 110.9 609 25.1
TAR636G3275 Trochodendron aralioides HOM05D003027 ORTHO05D003455 7.1e-22 110.5 390 30.8
Sc19g0007990 Simmondsia chinensis HOM05D003027 ORTHO05D003455 1.3e-20 106.3 385 30.6
Sopen04g025410 Solanum pennellii HOM05D003027 ORTHO05D003455 3.9e-20 104.8 609 27.1
BcaC02g12870 Brassica carinata HOM05D003027 ORTHO05D003455 7.4e-19 100.5 338 29.3
A04p03460 Brassica napus HOM05D003027 ORTHO05D003455 1.1e-17 96.7 620 24.4
BraA04t16091Z Brassica rapa HOM05D003027 ORTHO05D003455 1.4e-17 96.3 620 24.2
Solyc04g056460.2 Solanum lycopersicum HOM05D003027 ORTHO05D003455 6.9e-17 94.0 500 27.0
Dinv20756 Davidia involucrata HOM05D003027 ORTHO05D003455 1.2e-16 93.2 171 40.4
PGSC0003DMG400044159 Solanum tuberosum HOM05D003027 ORTHO05D003455 2.6e-16 92.0 223 35.9
Dinv20757 Davidia involucrata HOM05D003027 ORTHO05D003455 1.9e-14 85.9 172 38.4
BcaB04g21175 Brassica carinata HOM05D003027 ORTHO05D003455 5.5e-14 84.3 375 26.4
SMO200G0032 Selaginella moellendorffii HOM05D003027 ORTHO05D003455 7.4e-11 73.9 56 67.9
Solyc04g056490.3 Solanum lycopersicum HOM05D003027 ORTHO05D003455 3.4e-08 65.1 170 32.9
PGSC0003DMG400034669 Solanum tuberosum HOM05D003027 ORTHO05D003455 4.5e-08 64.7 312 26.0
BcaB04g21174 Brassica carinata HOM05D003027 ORTHO05D003455 2.2e-07 62.4 170 34.1
PGSC0003DMG400015702 Solanum tuberosum HOM05D002256 ORTHO05D003455 2.2e-07 62.4 177 34.5
BcaC04g21686 Brassica carinata HOM05D003027 ORTHO05D003455 3.8e-07 61.6 88 43.2
BcaC07g37745 Brassica carinata HOM05D003027 ORTHO05D003455 6.5e-07 60.8 52 59.6


User provided reference genes

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