Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c3_10370 Physcomitrium patens HOM05D004826 ORTHO05D006367 1.7e-249 865.5 435 100.0
Mapoly0048s0007 Marchantia polymorpha HOM05D004826 ORTHO05D006367 3.1e-110 402.9 435 52.2
SEGI_35891 Sequoiadendron giganteum HOM05D004826 ORTHO05D006367 5.5e-91 339.0 439 47.2
SMO358G0471 Selaginella moellendorffii HOM05D004826 ORTHO05D006367 6.1e-90 335.5 439 46.2
GSVIVG01001175001 Vitis vinifera HOM05D004826 ORTHO05D006367 1.5e-80 304.3 440 42.3
PSO832G3843 Papaver somniferum HOM05D004826 ORTHO05D006367 5.7e-80 302.4 426 41.1
MD11G1282600 Malus domestica HOM05D004826 ORTHO05D006367 2.2e-79 300.4 438 42.0
PSO210G5512 Papaver somniferum HOM05D004826 ORTHO05D006367 2.2e-79 300.4 426 41.1
BraA09t42171Z Brassica rapa HOM05D004826 ORTHO05D002453 5.4e-78 295.8 429 42.4
COL.COLO4_09064 Corchorus olitorius HOM05D004826 ORTHO05D003095 9.1e-78 295.0 430 42.8
BcaC07g42266 Brassica carinata HOM05D004826 ORTHO05D002453 1.2e-77 294.7 428 42.1
CARHR002460 Cardamine hirsuta HOM05D004826 ORTHO05D006367 2.0e-77 293.9 417 41.2
Solyc06g008700.3 Solanum lycopersicum HOM05D004826 ORTHO05D006367 2.7e-77 293.5 429 41.7
PGSC0003DMG400005331 Solanum tuberosum HOM05D004826 ORTHO05D006367 3.5e-77 293.1 429 41.5
A09p68350 Brassica napus HOM05D004826 ORTHO05D002453 4.5e-77 292.7 429 41.5
Sopen06g003480 Solanum pennellii HOM05D004826 ORTHO05D006367 4.5e-77 292.7 429 41.7
Dinv34775 Davidia involucrata HOM05D004826 ORTHO05D006367 5.9e-77 292.4 438 43.6
Gorai.008G003800 Gossypium raimondii HOM05D004826 ORTHO05D006367 1.0e-76 291.6 439 41.5
RcHm_v2.0_Chr6g0290561 Rosa chinensis HOM05D004826 ORTHO05D006367 1.3e-76 291.2 430 42.3
FvH4_2g23260 Fragaria vesca HOM05D004826 ORTHO05D006367 1.7e-76 290.8 433 42.5
Thhalv10007706m.g Eutrema salsugineum HOM05D004826 ORTHO05D006367 2.9e-76 290.0 422 41.5
VMungo1383G1287 Vigna mungo HOM05D004826 ORTHO05D006367 3.8e-76 289.7 422 41.9
Gohir.D12G004000 Gossypium hirsutum HOM05D004826 ORTHO05D006367 5.0e-76 289.3 439 41.5
Actinidia24908 Actinidia chinensis HOM05D004826 ORTHO05D006367 1.1e-75 288.1 438 40.6
Os03g0746800 Oryza sativa ssp. japonica HOM05D004826 ORTHO05D006367 1.5e-75 287.7 423 42.3
TAR633G1509 Trochodendron aralioides HOM05D004826 ORTHO05D006367 1.5e-75 287.7 430 41.2
Duzib138G1281 Durio zibethinus HOM05D004826 ORTHO05D006367 1.9e-75 287.3 465 40.2
Glyma.19G158200 Glycine max HOM05D004826 ORTHO05D006367 1.9e-75 287.3 419 40.6
Haze_04685 Corylus avellana HOM05D004826 ORTHO05D006367 2.5e-75 287.0 425 41.9
TWI75G1621 Tripterygium wilfordii HOM05D004826 ORTHO05D006367 3.3e-75 286.6 433 40.9
Phvul.001G153300 Phaseolus vulgaris HOM05D004826 ORTHO05D006367 5.5e-75 285.8 423 42.1
FAN27G1728 Fragaria x ananassa HOM05D004826 ORTHO05D006367 7.2e-75 285.4 435 41.6
Gohir.A12G004300 Gossypium hirsutum HOM05D004826 ORTHO05D006367 7.2e-75 285.4 452 40.0
THA.LOC104801247 Tarenaya hassleriana HOM05D004826 ORTHO05D006367 7.2e-75 285.4 426 41.1
FAN24G0969 Fragaria x ananassa HOM05D004826 ORTHO05D006367 9.5e-75 285.0 433 42.3
FAN20G2615 Fragaria x ananassa HOM05D004826 ORTHO05D006367 1.2e-74 284.6 435 41.6
Peaxi162Scf00572g00217 Petunia axillaris HOM05D004826 ORTHO05D006367 1.2e-74 284.6 424 41.0
AT1G03110 Arabidopsis thaliana HOM05D004826 ORTHO05D006367 1.6e-74 284.3 422 40.5
Lj1g0007005 Lotus japonicus HOM05D004826 ORTHO05D006367 1.6e-74 284.3 434 40.3
Carub.0001s0225 Capsella rubella HOM05D004826 ORTHO05D006367 2.1e-74 283.9 422 40.3
AagrBONN_evm.TU.Sc2ySwM_228.3229 Anthoceros agrestis HOM05D011762 ORTHO05D014803 2.8e-74 283.5 331 51.1
DCAR_002720 Daucus carota HOM05D004826 ORTHO05D006367 2.8e-74 283.5 424 42.7
Medtr7g095190 Medicago truncatula HOM05D004826 ORTHO05D006367 2.8e-74 283.5 423 40.4
Prupe.8G238200 Prunus persica HOM05D004826 ORTHO05D006367 2.8e-74 283.5 427 40.7
Oeu025741.1 Olea europaea HOM05D004826 ORTHO05D006367 3.6e-74 283.1 428 42.3
A08p37480 Brassica napus HOM05D004826 ORTHO05D006367 6.1e-74 282.3 435 40.5
Ca_08614_v3 Cicer arietinum L. HOM05D004826 ORTHO05D006367 6.1e-74 282.3 423 39.7
Aqoxy5G00445 Aquilegia oxysepala HOM05D004826 ORTHO05D006367 8.0e-74 282.0 420 40.7
Potri.005G211600 Populus trichocarpa HOM05D004826 ORTHO05D006367 8.0e-74 282.0 434 42.4
Thecc.01G275300 Theobroma cacao HOM05D004826 ORTHO05D006367 1.0e-73 281.6 455 40.0
FAN15G0865 Fragaria x ananassa HOM05D004826 ORTHO05D006367 1.4e-73 281.2 435 41.4
arahy.Tifrunner.gnm1.ann1.HM2HLZ Arachis hypogaea HOM05D004826 ORTHO05D006367 2.3e-73 280.4 423 40.4
CANSAT25G1434 Cannabis sativa HOM05D004826 ORTHO05D006367 2.3e-73 280.4 430 43.5
Glyma.03G155900 Glycine max HOM05D004826 ORTHO05D006367 4.0e-73 279.6 421 41.3
Hma1.2p1_0822F.1_g224300 Hydrangea macrophylla HOM05D004826 ORTHO05D006367 1.2e-72 278.1 428 42.1
arahy.Tifrunner.gnm1.ann1.ZSCD81 Arachis hypogaea HOM05D004826 ORTHO05D006367 1.5e-72 277.7 432 39.4
BolC8t46840H Brassica oleracea HOM05D004826 ORTHO05D006367 1.5e-72 277.7 444 39.4
BraA08t35646Z Brassica rapa HOM05D004826 ORTHO05D006367 1.5e-72 277.7 445 39.8
AUR62028599 Chenopodium quinoa HOM05D004826 ORTHO05D006367 2.6e-72 276.9 433 39.5
C08p00410 Brassica napus HOM05D004826 ORTHO05D006367 3.4e-72 276.6 436 40.1
BolC8t52808H Brassica oleracea HOM05D004826 ORTHO05D002453 9.8e-72 275.0 427 40.7
CSS0030159 Camellia sinensis var. sinensis HOM05D004826 ORTHO05D006367 1.3e-71 274.6 429 40.8
AUR62032326 Chenopodium quinoa HOM05D004826 ORTHO05D006367 1.3e-71 274.6 435 39.3
CSS0031998 Camellia sinensis var. sinensis HOM05D004826 ORTHO05D006367 1.7e-71 274.2 429 40.8
Sp1g02120 Schrenkiella parvula HOM05D004826 ORTHO05D006367 1.7e-71 274.2 423 38.8
Aa31LG1G9410 Aethionema arabicum HOM05D004826 ORTHO05D006367 2.2e-71 273.9 439 39.6
Eucgr.K03351 Eucalyptus grandis HOM05D004826 ORTHO05D006367 2.2e-71 273.9 432 39.6
Rhsim01G0273300 Rhododendron simsii HOM05D004826 ORTHO05D006367 2.2e-71 273.9 431 41.1
Cc01_g19270 Coffea canephora HOM05D004826 ORTHO05D006367 4.9e-71 272.7 433 41.3
Psat3g063080 Pisum sativum HOM05D004826 ORTHO05D006367 4.9e-71 272.7 427 39.1
AL1G12580 Arabidopsis lyrata HOM05D004826 ORTHO05D006367 6.3e-71 272.3 422 39.8
CsaV3_7G027950 Cucumis sativus L. HOM05D004826 ORTHO05D006367 1.4e-70 271.2 439 38.3
C08p52920 Brassica napus HOM05D004826 ORTHO05D002453 1.8e-70 270.8 425 40.5
TPR.G24327 Trifolium pratense HOM05D004826 ORTHO05D006367 1.8e-70 270.8 425 39.5
Cpa.g.sc2545.1 Carica papaya HOM05D004826 ORTHO05D006367 3.2e-70 270.0 461 39.0
Lj1A48T56 Lonicera japonica HOM05D004826 ORTHO05D006367 3.2e-70 270.0 435 40.5
Manes.05G079700 Manihot esculenta HOM05D004826 ORTHO05D006367 4.1e-70 269.6 428 41.8
ECA236G2315 Erigeron canadensis HOM05D004826 ORTHO05D006367 5.4e-70 269.2 428 40.4
Ciclev10020269m.g Citrus clementina HOM05D004826 ORTHO05D006367 1.2e-69 268.1 430 40.7
SalBow4G1440 Salvia bowleyana HOM05D004826 ORTHO05D006367 5.9e-69 265.8 439 39.0
vmacro14910 Vaccinium macrocarpon HOM05D004826 ORTHO05D006367 5.9e-69 265.8 456 39.3
MSTRG.18248 Avicennia marina HOM05D004826 ORTHO05D006367 1.7e-68 264.2 423 39.0
Sc17g0001330 Simmondsia chinensis HOM05D004826 ORTHO05D006367 1.7e-68 264.2 424 38.9
EL10Ac5g10541 Beta vulgaris HOM05D004826 ORTHO05D006367 3.9e-68 263.1 435 39.1
Migut.D00320 Erythranthe guttata HOM05D004826 ORTHO05D006367 3.9e-68 263.1 441 38.8
CDE06G0967 Ceratophyllum demersum HOM05D004826 ORTHO05D006367 5.0e-68 262.7 426 40.1
MELO3C015814.2 Cucumis melo HOM05D004826 ORTHO05D006367 1.5e-67 261.2 429 38.5
Lalb_Chr01g0020091 Lupinus albus HOM05D004826 ORTHO05D006367 1.9e-67 260.8 438 36.8
PGR044G1874 Punica granatum HOM05D004826 ORTHO05D006367 1.4e-65 254.6 424 38.9
Sabra05G0161700 Salix brachista HOM05D004826 ORTHO05D006367 1.4e-65 254.6 452 38.7
Ah.02g110880 Amaranthus hybridus HOM05D004826 ORTHO05D006367 1.8e-65 254.2 404 39.1
Nn1g02359 Nelumbo nucifera HOM05D004826 ORTHO05D006367 2.3e-65 253.8 299 46.8
HPP92_006117 Vanilla planifolia HOM05D004826 ORTHO05D006367 2.3e-65 253.8 426 37.8
Zm00001eb215000 Zea mays HOM05D004826 ORTHO05D006367 3.1e-65 253.4 434 38.2
CBR_g19915 Chara braunii HOM05D004826 ORTHO05D006367 5.2e-65 252.7 599 32.2
HanXRQChr04g0118961 Helianthus annuus HOM05D004826 ORTHO05D006367 2.0e-64 250.8 423 39.5
MD03G1261900 Malus domestica HOM05D004826 ORTHO05D006367 1.3e-63 248.1 426 39.0
QL12p021024 Quercus lobata HOM05D004826 ORTHO05D006367 4.9e-63 246.1 509 35.8
C05p01720 Brassica napus HOM05D004826 ORTHO05D006367 8.3e-63 245.4 439 38.7
Ca_08622_v3 Cicer arietinum L. HOM05D004826 ORTHO05D006367 1.9e-62 244.2 389 38.3
ClCG09G007220 Citrullus lanatus HOM05D004826 ORTHO05D006367 4.1e-62 243.0 467 34.9
Lsat_1_v5_gn_8_56761 Lactuca sativa HOM05D004826 ORTHO05D006367 2.8e-58 230.3 406 37.4
Atru.chr5.1473 Acer truncatum HOM05D004826 ORTHO05D006367 1.2e-56 224.9 227 52.4
unitig_0.g133 Utricularia gibba HOM05D004826 ORTHO05D006367 5.4e-54 216.1 411 36.0
CiPaw.07G089800 Carya illinoinensis HOM05D004826 ORTHO05D006367 2.3e-49 200.7 338 42.0
RcHm_v2.0_Chr6g0290571 Rosa chinensis HOM05D004826 ORTHO05D006367 1.2e-48 198.4 244 46.3
SHI16389 Sapria himalayana HOM05D000105 ORTHO05D000023 4.4e-48 196.4 195 49.2
A10p01740 Brassica napus HOM05D004826 ORTHO05D006367 2.2e-47 194.1 436 35.6
Hma1.2p1_0822F.1_g224310 Hydrangea macrophylla HOM05D004826 ORTHO05D006367 9.6e-43 178.7 304 42.4
Sed0001689 Sechium edule HOM05D004826 ORTHO05D006367 1.2e-40 171.8 344 35.8
MBI05_g20783_MAGBIO Magnolia biondii HOM05D004826 ORTHO05D006367 3.2e-38 163.7 333 36.9
Nitab4.5_0005696g0030 Nicotiana tabacum HOM05D004826 ORTHO05D006367 3.2e-38 163.7 273 37.0
CSS0007905 Camellia sinensis var. sinensis HOM05D004826 ORTHO05D006367 4.3e-35 153.3 158 48.7
C01p00020 Brassica napus HOM05D004826 ORTHO05D006367 1.6e-34 151.4 373 31.9
BcaNung01310 Brassica carinata HOM05D004826 ORTHO05D006367 2.8e-34 150.6 371 32.6
BolC1t00008H Brassica oleracea HOM05D004826 ORTHO05D006367 3.6e-34 150.2 373 31.6
BraA10t42449Z Brassica rapa HOM05D004826 ORTHO05D006367 5.8e-32 142.9 296 36.5
CSS0022346 Camellia sinensis var. sinensis HOM05D004826 ORTHO05D006367 1.3e-31 141.7 161 47.2
BcaNung01308 Brassica carinata HOM05D004826 ORTHO05D006367 4.6e-29 133.3 375 29.6
BolC1t00011H Brassica oleracea HOM05D004826 ORTHO05D006367 3.6e-26 123.6 220 36.4
SGA_v2.0_scaffold138G35320 Striga asiatica HOM05D004826 ORTHO05D006367 6.9e-25 119.4 322 31.4
MCO04G388 Micromonas commoda HOM05D004826 ORTHO05D006367 3.4e-24 117.1 303 29.0
Cre08.g374800 Chlamydomonas reinhardtii HOM05D004826 ORTHO05D006367 1.1e-22 112.1 240 32.1
TWI12G0215 Tripterygium wilfordii HOM05D004826 ORTHO05D006367 1.3e-15 88.6 105 41.0
ATR0665G626 Amborella trichopoda HOM05D004826 ORTHO05D006367 2.2e-15 87.8 125 40.0
CiPaw.07G089700 Carya illinoinensis HOM05D004826 ORTHO05D006367 3.2e-14 84.0 99 42.4
PRCOL_00006778 Prasinoderma coloniale HOM05D004826 ORTHO05D006367 3.2e-14 84.0 414 25.6
BolC5t28951H Brassica oleracea HOM05D004826 ORTHO05D006367 7.1e-14 82.8 284 29.6
Hma1.2p1_0822F.1_g224290 Hydrangea macrophylla HOM05D004826 ORTHO05D006367 9.3e-14 82.4 84 44.0
arahy.Tifrunner.gnm1.ann1.QRYF2V Arachis hypogaea HOM05D004826 ORTHO05D006367 9.6e-11 72.4 302 24.5
Lj1C48G4 Lonicera japonica HOM05D000001 ORTHO05D000003 1.1e-09 68.9 228 26.8
BcaC05g24557 Brassica carinata HOM05D001359 ORTHO05D001200 1.8e-09 68.2 181 32.0
Gorai.005G155300 Gossypium raimondii HOM05D004826 ORTHO05D006367 1.8e-09 68.2 69 43.5
Gohir.D02G138850 Gossypium hirsutum HOM05D004826 ORTHO05D006367 4.1e-09 67.0 69 43.5
Nitab4.5_0025955g0010 Nicotiana tabacum HOM05D004826 ORTHO05D006367 3.4e-08 63.9 231 29.0
arahy.Tifrunner.gnm1.ann1.XCP3P1 Arachis hypogaea HOM05D004826 ORTHO05D006367 1.0e-07 62.4 98 35.7
Sabra02G0041400 Salix brachista HOM05D004826 ORTHO05D006367 1.3e-07 62.0 57 47.4
FAN12G3656 Fragaria x ananassa HOM05D000453 ORTHO05D000387 6.5e-07 59.7 167 26.3
arahy.Tifrunner.gnm1.ann1.DV54YZ Arachis hypogaea HOM05D004826 ORTHO05D006367 7.2e-06 56.2 68 42.6


User provided reference genes

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