Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c3_10050 Physcomitrium patens HOM05D004380 ORTHO05D005134 1.4e-203 713.4 566 100.0
Mapoly0062s0011 Marchantia polymorpha HOM05D004380 ORTHO05D005134 5.9e-85 319.3 591 61.6
AagrBONN_evm.TU.Sc2ySwM_117.3835 Anthoceros agrestis HOM05D004380 ORTHO05D005134 3.7e-71 273.5 225 63.1
TWI81G0890 Tripterygium wilfordii HOM05D004380 ORTHO05D005134 2.2e-68 264.2 215 63.7
GSVIVG01013206001 Vitis vinifera HOM05D004380 ORTHO05D005134 1.5e-67 261.5 574 39.7
SEGI_39298 Sequoiadendron giganteum HOM05D004380 ORTHO05D005134 1.9e-67 261.2 578 52.1
vmacro14143 Vaccinium macrocarpon HOM05D004380 ORTHO05D005134 4.2e-67 260.0 572 40.9
Manes.15G172200 Manihot esculenta HOM05D004380 ORTHO05D005134 9.5e-67 258.8 223 60.1
Nn6g33684 Nelumbo nucifera HOM05D004380 ORTHO05D005134 3.6e-66 256.9 244 58.2
ATR0665G406 Amborella trichopoda HOM05D004380 ORTHO05D005134 2.3e-65 254.2 245 56.3
Cc01_g02120 Coffea canephora HOM05D004380 ORTHO05D005134 5.2e-65 253.1 585 48.4
Os08g0178300 Oryza sativa ssp. japonica HOM05D004380 ORTHO05D005134 6.8e-65 252.7 576 55.4
Atru.chr1.3775 Acer truncatum HOM05D004380 ORTHO05D005134 8.8e-65 252.3 223 62.3
BraA05t21429Z Brassica rapa HOM05D004380 ORTHO05D005134 1.2e-64 251.9 570 53.5
Actinidia10879 Actinidia chinensis HOM05D004380 ORTHO05D005134 2.0e-64 251.1 213 63.4
BcaB03g13784 Brassica carinata HOM05D004380 ORTHO05D005134 2.0e-64 251.1 571 53.1
CDE11G0710 Ceratophyllum demersum HOM05D004380 ORTHO05D005134 2.0e-64 251.1 215 60.5
THA.LOC104814403 Tarenaya hassleriana HOM05D004380 ORTHO05D005134 2.6e-64 250.8 587 40.7
Potri.003G087200 Populus trichocarpa HOM05D004380 ORTHO05D005134 3.4e-64 250.4 244 57.0
Sp1g27590 Schrenkiella parvula HOM05D004380 ORTHO05D005134 4.4e-64 250.0 246 57.7
SMO144G0180 Selaginella moellendorffii HOM05D004380 ORTHO05D005134 5.7e-64 249.6 219 60.3
Thecc.05G299600 Theobroma cacao HOM05D004380 ORTHO05D005134 7.5e-64 249.2 224 59.8
Rhsim07G0121900 Rhododendron simsii HOM05D004380 ORTHO05D005134 9.8e-64 248.8 570 43.0
Aa31LG9G15640 Aethionema arabicum HOM05D004380 ORTHO05D005134 1.7e-63 248.1 566 44.5
A05p25450 Brassica napus HOM05D004380 ORTHO05D005134 3.7e-63 246.9 570 53.3
Cpa.g.sc69.34 Carica papaya HOM05D004380 ORTHO05D005134 4.9e-63 246.5 576 34.0
Dinv25182 Davidia involucrata HOM05D004380 ORTHO05D005134 6.3e-63 246.1 216 63.0
PGSC0003DMG400022576 Solanum tuberosum HOM05D004380 ORTHO05D005134 6.3e-63 246.1 577 51.8
CiPaw.11G087400 Carya illinoinensis HOM05D004380 ORTHO05D005134 8.3e-63 245.7 587 35.1
COL.COLO4_13527 Corchorus olitorius HOM05D004380 ORTHO05D005134 8.3e-63 245.7 224 59.8
PSO832G0693 Papaver somniferum HOM05D004380 ORTHO05D005134 8.3e-63 245.7 565 53.6
Aqoxy3G00393 Aquilegia oxysepala HOM05D004380 ORTHO05D005134 1.1e-62 245.4 231 57.1
Cfa012380 Carpinus fangiana HOM05D004380 ORTHO05D005134 2.4e-62 244.2 224 59.8
DCAR_015696 Daucus carota HOM05D004380 ORTHO05D005134 3.1e-62 243.8 242 55.0
Gorai.007G293700 Gossypium raimondii HOM05D004380 ORTHO05D005134 4.1e-62 243.4 225 58.7
BcaC05g27949 Brassica carinata HOM05D004380 ORTHO05D005134 7.0e-62 242.7 570 52.8
Gohir.A11G262400 Gossypium hirsutum HOM05D004380 ORTHO05D005134 7.0e-62 242.7 217 60.4
PSO782G4920 Papaver somniferum HOM05D004380 ORTHO05D005134 9.2e-62 242.3 575 52.0
C05p39530 Brassica napus HOM05D004380 ORTHO05D005134 2.0e-61 241.1 570 52.6
Solyc03g033950.4 Solanum lycopersicum HOM05D004380 ORTHO05D005134 2.0e-61 241.1 249 56.6
TAR629G2821 Trochodendron aralioides HOM05D004380 ORTHO05D005134 2.0e-61 241.1 220 59.1
CDE02G1296 Ceratophyllum demersum HOM05D004380 ORTHO05D005134 2.7e-61 240.7 586 40.3
RcHm_v2.0_Chr4g0446311 Rosa chinensis HOM05D004380 ORTHO05D005134 2.7e-61 240.7 224 57.6
EL10Ac4g09041 Beta vulgaris HOM05D004380 ORTHO05D005134 3.5e-61 240.4 224 59.4
CAN.G1336.5 Capsicum annuum HOM05D004380 ORTHO05D005134 4.5e-61 240.0 592 49.0
SGA_v2.0_scaffold86G26890 Striga asiatica HOM05D004380 ORTHO05D005134 4.5e-61 240.0 573 36.1
Sopen03g006700 Solanum pennellii HOM05D004380 ORTHO05D005134 7.8e-61 239.2 248 55.6
FvH4_4g36560 Fragaria vesca HOM05D004380 ORTHO05D005134 1.0e-60 238.8 224 57.1
FAN12G0331 Fragaria x ananassa HOM05D004380 ORTHO05D005134 1.0e-60 238.8 224 57.1
Sed0018208 Sechium edule HOM05D004380 ORTHO05D005134 1.0e-60 238.8 580 35.5
Hma1.2p1_0311F.1_g121260 Hydrangea macrophylla HOM05D004380 ORTHO05D005134 2.3e-60 237.7 244 54.9
BolC5t32694H Brassica oleracea HOM05D004380 ORTHO05D005134 2.9e-60 237.3 572 51.7
ClCG03G011240 Citrullus lanatus HOM05D004380 ORTHO05D005134 2.9e-60 237.3 570 32.8
Lsat_1_v5_gn_6_63641 Lactuca sativa HOM05D004380 ORTHO05D005134 2.9e-60 237.3 567 36.7
FAN17G2609 Fragaria x ananassa HOM05D004380 ORTHO05D005134 5.0e-60 236.5 224 56.7
PSO063G6462 Papaver somniferum HOM05D004380 ORTHO05D005134 6.6e-60 236.1 567 52.9
Migut.J01084 Erythranthe guttata HOM05D004380 ORTHO05D005134 1.1e-59 235.3 570 34.7
MD16G1006500 Malus domestica HOM05D004380 ORTHO05D005134 1.1e-59 235.3 571 46.2
Ah.09g224390 Amaranthus hybridus HOM05D004380 ORTHO05D005134 1.5e-59 235.0 574 45.3
AT1G31870 Arabidopsis thaliana HOM05D004380 ORTHO05D005134 2.5e-59 234.2 581 43.7
AL1G45970 Arabidopsis lyrata HOM05D004380 ORTHO05D005134 5.6e-59 233.0 581 53.7
SMO118G0163 Selaginella moellendorffii HOM05D004380 ORTHO05D005134 7.3e-59 232.6 219 58.0
FAN07G2732 Fragaria x ananassa HOM05D004380 ORTHO05D005134 9.5e-59 232.3 580 52.1
Prupe.8G202500 Prunus persica HOM05D004380 ORTHO05D005134 9.5e-59 232.3 568 37.3
ECA233G1538 Erigeron canadensis HOM05D004380 ORTHO05D005134 1.2e-58 231.9 584 42.5
HanXRQChr16g0500491 Helianthus annuus HOM05D004380 ORTHO05D005134 1.2e-58 231.9 571 39.4
Carub.0001s3020 Capsella rubella HOM05D004380 ORTHO05D005134 1.6e-58 231.5 590 47.3
Thhalv10007193m.g Eutrema salsugineum HOM05D004380 ORTHO05D005134 1.6e-58 231.5 576 52.6
FAN22G0510 Fragaria x ananassa HOM05D004380 ORTHO05D005134 1.6e-58 231.5 580 49.3
Medtr8g030840 Medicago truncatula HOM05D004380 ORTHO05D005134 1.6e-58 231.5 575 37.9
Lj6C290G5 Lonicera japonica HOM05D004380 ORTHO05D005134 3.6e-58 230.3 297 47.8
SGA_v2.0_scaffold20G09254 Striga asiatica HOM05D003893 ORTHO05D005167 4.7e-58 229.9 531 36.2
QL03p017813 Quercus lobata HOM05D004380 ORTHO05D005134 2.3e-57 227.6 583 37.7
Actinidia31472 Actinidia chinensis HOM05D004380 ORTHO05D005134 3.0e-57 227.3 245 53.1
CARHR031210 Cardamine hirsuta HOM05D004380 ORTHO05D005134 4.0e-57 226.9 573 49.9
arahy.Tifrunner.gnm1.ann1.522STQ Arachis hypogaea HOM05D004380 ORTHO05D005134 8.9e-57 225.7 570 34.7
CsaV3_2G035720 Cucumis sativus L. HOM05D004380 ORTHO05D005134 1.2e-56 225.3 584 34.1
Gohir.D11G272400 Gossypium hirsutum HOM05D004380 ORTHO05D005134 1.2e-56 225.3 224 54.9
Peaxi162Scf01164g00006 Petunia axillaris HOM05D004380 ORTHO05D005134 3.4e-56 223.8 603 51.6
HPP92_020120 Vanilla planifolia HOM05D004380 ORTHO05D005134 1.3e-55 221.9 168 64.3
HPP92_020130 Vanilla planifolia HOM05D004380 ORTHO05D005134 1.7e-55 221.5 153 68.0
Nitab4.5_0005084g0010 Nicotiana tabacum HOM05D004380 ORTHO05D005134 2.2e-55 221.1 566 50.2
HanXRQChr12g0372541 Helianthus annuus HOM05D004380 ORTHO05D005134 2.9e-55 220.7 568 44.0
Lalb_Chr04g0258181 Lupinus albus HOM05D004380 ORTHO05D005134 2.9e-55 220.7 582 36.6
Hund11501 Selenicereus undatus HOM05D004380 ORTHO05D005134 2.9e-55 220.7 149 69.1
TPR.G23111 Trifolium pratense HOM05D004380 ORTHO05D005134 6.4e-55 219.5 145 69.7
Oeu045705.2 Olea europaea HOM05D004380 ORTHO05D005134 1.8e-54 218.0 212 57.1
CANSAT21G1629 Cannabis sativa HOM05D004380 ORTHO05D005134 3.2e-54 217.2 570 41.9
Sabra03G0056900 Salix brachista HOM05D004380 ORTHO05D005134 3.2e-54 217.2 563 43.3
CAN.G1823.5 Capsicum annuum HOM05D004380 ORTHO05D005134 1.6e-53 214.9 247 52.2
VMungo0331G0855 Vigna mungo HOM05D004380 ORTHO05D005134 1.6e-53 214.9 216 54.6
Lj3g0000626 Lotus japonicus HOM05D004380 ORTHO05D005134 2.7e-53 214.2 217 53.9
Duzib128G0331 Durio zibethinus HOM05D004380 ORTHO05D005134 3.5e-53 213.8 571 41.7
Aa31LG9G6660 Aethionema arabicum HOM05D004380 ORTHO05D005134 5.9e-53 213.0 163 63.8
Psat4g154840 Pisum sativum HOM05D004380 ORTHO05D005134 5.9e-53 213.0 570 37.7
Ciclev10033653m.g Citrus clementina HOM05D004380 ORTHO05D005134 3.0e-52 210.7 586 46.4
Phvul.010G098800 Phaseolus vulgaris HOM05D004380 ORTHO05D005134 6.6e-52 209.5 216 54.2
Haze_08305 Corylus avellana HOM05D004380 ORTHO05D005134 8.6e-52 209.1 610 45.1
CBR_g26347 Chara braunii HOM05D004380 ORTHO05D005134 3.3e-51 207.2 232 52.6
Cpa.g.sc69.32 Carica papaya HOM05D004380 ORTHO05D005134 2.8e-50 204.1 147 66.7
Glyma.07G070900 Glycine max HOM05D004380 ORTHO05D005134 8.0e-50 202.6 244 49.6
Phvul.011G076400 Phaseolus vulgaris HOM05D004380 ORTHO05D005134 1.0e-49 202.2 182 57.7
Sed0024296 Sechium edule HOM05D004380 ORTHO05D005134 1.4e-49 201.8 193 57.0
arahy.Tifrunner.gnm1.ann1.ARJY2C Arachis hypogaea HOM05D004380 ORTHO05D005134 3.4e-48 197.2 231 51.5
CAN.G248.21 Capsicum annuum HOM05D004380 ORTHO05D005134 3.4e-48 197.2 232 50.0
CARHR062710 Cardamine hirsuta HOM05D004380 ORTHO05D005134 4.9e-47 193.4 180 57.2
unitig_21.g20505 Utricularia gibba HOM05D004380 ORTHO05D005134 8.3e-47 192.6 591 35.0
DCAR_007574 Daucus carota HOM05D004380 ORTHO05D005134 1.1e-46 192.2 146 64.4
CiPaw.04G096200 Carya illinoinensis HOM05D004380 ORTHO05D005134 9.2e-46 189.1 576 29.9
arahy.Tifrunner.gnm1.ann1.I1PL9V Arachis hypogaea HOM05D004380 ORTHO05D005134 3.0e-44 184.1 152 60.5
TPR.G20578 Trifolium pratense HOM05D004380 ORTHO05D005134 1.4e-41 175.3 113 69.0
AUR62018778 Chenopodium quinoa HOM05D004380 ORTHO05D005134 1.2e-40 172.2 193 52.3
THA.LOC104812727 Tarenaya hassleriana HOM05D004380 ORTHO05D005134 2.0e-40 171.4 186 52.7
arahy.Tifrunner.gnm1.ann1.MH0ZUI Arachis hypogaea HOM05D004380 ORTHO05D005134 2.6e-40 171.0 166 54.2
AUR62007222 Chenopodium quinoa HOM05D004380 ORTHO05D005134 2.2e-39 167.9 571 42.9
arahy.Tifrunner.gnm1.ann1.MX4EXC Arachis hypogaea HOM05D004380 ORTHO05D005134 4.9e-39 166.8 543 29.5
Cre01.g003487 Chlamydomonas reinhardtii HOM05D004380 ORTHO05D005134 8.3e-39 166.0 217 47.0
arahy.Tifrunner.gnm1.ann1.45D7QY Arachis hypogaea HOM05D004380 ORTHO05D005134 3.9e-36 157.1 158 53.8
MCO15G532 Micromonas commoda HOM05D004380 ORTHO05D005134 2.1e-34 151.4 229 41.5
Nitab4.5_0008421g0010 Nicotiana tabacum HOM05D004380 ORTHO05D005134 4.0e-33 147.1 577 45.4
CSS0001415 Camellia sinensis var. sinensis HOM05D004380 ORTHO05D005134 2.6e-32 144.4 86 73.3
CSS0037993 Camellia sinensis var. sinensis HOM05D004380 ORTHO05D005134 2.6e-32 144.4 86 73.3
PRCOL_00005638 Prasinoderma coloniale HOM05D004380 ORTHO05D005134 3.9e-28 130.6 215 43.3
Sp5g21510 Schrenkiella parvula HOM05D004380 ORTHO05D005134 6.0e-21 106.7 98 55.1
Haze_08308 Corylus avellana HOM05D004380 ORTHO05D005134 2.3e-20 104.8 534 41.8
MELO3C024775.2 Cucumis melo HOM05D004380 ORTHO05D005134 1.1e-19 102.4 495 30.3
Potri.001G147100 Populus trichocarpa HOM05D004380 ORTHO05D005134 1.2e-16 92.4 112 48.2
Zm00001eb400590 Zea mays HOM05D004380 ORTHO05D005134 8.4e-15 86.3 105 49.5
Dinv40656 Davidia involucrata HOM05D000301 ORTHO05D000303 1.9e-14 85.1 53 67.9
AL3G52660 Arabidopsis lyrata HOM05D004380 ORTHO05D005134 2.4e-14 84.7 66 57.6
CSS0014122 Camellia sinensis var. sinensis HOM05D004380 ORTHO05D005134 6.7e-12 76.6 135 37.0
CSS0026269 Camellia sinensis var. sinensis HOM05D004380 ORTHO05D005134 6.7e-12 76.6 135 37.0
Cfa026589 Carpinus fangiana HOM05D004380 ORTHO05D005134 5.6e-11 73.6 137 35.0
Hund11272 Selenicereus undatus HOM05D004380 ORTHO05D005134 9.6e-11 72.8 119 36.1
Ca_23634_v3 Cicer arietinum L. HOM05D000346 ORTHO05D000326 2.1e-10 71.6 137 35.0
Sc22g0001370 Simmondsia chinensis HOM05D004380 ORTHO05D005134 2.8e-10 71.2 489 45.4
Lsat_1_v5_gn_3_2421 Lactuca sativa HOM05D004380 ORTHO05D005134 1.1e-09 69.3 133 32.3
HPP92_020129 Vanilla planifolia HOM05D004380 ORTHO05D005134 1.1e-09 69.3 98 36.7
COL.COLO4_33038 Corchorus olitorius HOM05D004380 ORTHO05D005134 2.4e-09 68.2 98 44.9
Haze_13061 Corylus avellana HOM05D000001 ORTHO05D010365 4.0e-09 67.4 131 35.1
Oeu037610.2 Olea europaea HOM05D004380 ORTHO05D005134 1.5e-08 65.5 157 31.8
QL12p007207 Quercus lobata HOM05D004380 ORTHO05D005134 2.6e-08 64.7 157 28.7
SHI10270 Sapria himalayana HOM05D004380 ORTHO05D005134 1.3e-07 62.4 133 33.8
C05p31200 Brassica napus HOM05D004380 ORTHO05D005134 3.8e-07 60.8 50 60.0
Lj2C247T7 Lonicera japonica HOM05D004380 ORTHO05D005134 3.2e-06 57.8 70 51.4


User provided reference genes

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