Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c2_30030 Physcomitrium patens HOM05D004753 ORTHO05D005920 1.6e-275 952.2 516 100.0
Mapoly0097s0041 Marchantia polymorpha HOM05D004753 ORTHO05D005920 3.5e-137 492.7 329 75.4
AagrBONN_evm.TU.Sc2ySwM_362.2675 Anthoceros agrestis HOM05D004753 ORTHO05D005920 1.8e-136 490.3 423 64.5
SMO331G0088 Selaginella moellendorffii HOM05D004753 ORTHO05D005920 8.5e-115 418.3 274 74.1
Nn3g21484 Nelumbo nucifera HOM05D004753 ORTHO05D005920 8.5e-107 391.7 294 65.0
ATR0584G246 Amborella trichopoda HOM05D004753 ORTHO05D005920 2.5e-106 390.2 300 63.0
Eucgr.K03479 Eucalyptus grandis HOM05D004753 ORTHO05D005920 3.2e-106 389.8 299 63.9
Manes.01G218800 Manihot esculenta HOM05D004753 ORTHO05D005920 4.2e-106 389.4 309 62.5
Ciclev10023300m.g Citrus clementina HOM05D004753 ORTHO05D005920 7.2e-106 388.7 288 64.9
QL09p032163 Quercus lobata HOM05D004753 ORTHO05D005920 1.2e-105 387.9 302 62.6
Sabra02G0154600 Salix brachista HOM05D004753 ORTHO05D005920 1.2e-105 387.9 307 62.2
MBI18_g06877_MAGBIO Magnolia biondii HOM05D004753 ORTHO05D005920 1.6e-105 387.5 295 64.1
CiPaw.14G100000 Carya illinoinensis HOM05D004753 ORTHO05D005920 2.7e-105 386.7 304 63.2
ClCG10G010920 Citrullus lanatus HOM05D004753 ORTHO05D005920 4.7e-105 386.0 296 62.5
QL12p028506 Quercus lobata HOM05D004753 ORTHO05D005920 8.0e-105 385.2 314 61.8
MELO3C017956.2 Cucumis melo HOM05D004753 ORTHO05D005920 2.3e-104 383.6 296 62.2
Haze_24929 Corylus avellana HOM05D004753 ORTHO05D005920 3.0e-104 383.3 311 61.4
Potri.014G129700 Populus trichocarpa HOM05D004753 ORTHO05D005920 3.0e-104 383.3 307 62.2
Cpa.g.sc16.169 Carica papaya HOM05D004753 ORTHO05D005920 4.0e-104 382.9 303 62.4
Atru.chr5.901 Acer truncatum HOM05D004753 ORTHO05D005920 5.2e-104 382.5 282 64.9
Potri.002G204900 Populus trichocarpa HOM05D004753 ORTHO05D005920 5.2e-104 382.5 298 62.4
SGA_v2.0_scaffold2G01394 Striga asiatica HOM05D004753 ORTHO05D005920 5.2e-104 382.5 300 63.7
Thecc.01G300100 Theobroma cacao HOM05D004753 ORTHO05D005920 5.2e-104 382.5 290 63.4
Sed0000474 Sechium edule HOM05D004753 ORTHO05D005920 1.2e-103 381.3 301 61.8
Haze_04935 Corylus avellana HOM05D004753 ORTHO05D005920 2.0e-103 380.6 314 60.8
Sabra14G0096300 Salix brachista HOM05D004753 ORTHO05D005920 2.6e-103 380.2 319 59.9
CsaV3_4G000800 Cucumis sativus L. HOM05D004753 ORTHO05D005920 3.3e-103 379.8 296 61.5
vmacro15009 Vaccinium macrocarpon HOM05D004753 ORTHO05D005920 4.4e-103 379.4 326 60.1
Lsat_1_v5_gn_4_87281 Lactuca sativa HOM05D004753 ORTHO05D005920 5.7e-103 379.0 309 60.8
THA.LOC104818291 Tarenaya hassleriana HOM05D004753 ORTHO05D005920 7.5e-103 378.6 313 60.4
Cc09_g07750 Coffea canephora HOM05D004753 ORTHO05D005920 9.7e-103 378.3 311 60.5
PGSC0003DMG401027528 Solanum tuberosum HOM05D004753 ORTHO05D005920 9.7e-103 378.3 315 61.0
Aqoxy2G02947 Aquilegia oxysepala HOM05D004753 ORTHO05D005920 1.3e-102 377.9 303 60.7
CSS0011058 Camellia sinensis var. sinensis HOM05D004753 ORTHO05D005920 1.3e-102 377.9 302 61.3
Oeu046682.2 Olea europaea HOM05D004753 ORTHO05D005920 1.3e-102 377.9 318 60.1
PGR044G2668 Punica granatum HOM05D004753 ORTHO05D005920 1.3e-102 377.9 321 59.8
SalBow3G1002 Salvia bowleyana HOM05D004753 ORTHO05D005920 1.3e-102 377.9 301 61.5
COL.COLO4_23348 Corchorus olitorius HOM05D004753 ORTHO05D005920 1.7e-102 377.5 295 62.0
MD03G1288000 Malus domestica HOM05D004753 ORTHO05D005920 1.7e-102 377.5 301 61.8
MD11G1310300 Malus domestica HOM05D004753 ORTHO05D005920 1.7e-102 377.5 301 61.8
Oeu011458.1 Olea europaea HOM05D004753 ORTHO05D005920 1.7e-102 377.5 301 62.1
HanXRQChr08g0207921 Helianthus annuus HOM05D004753 ORTHO05D005920 2.2e-102 377.1 301 62.5
Peaxi162Scf01084g00120 Petunia axillaris HOM05D004753 ORTHO05D005920 2.2e-102 377.1 310 60.3
MSTRG.18152 Avicennia marina HOM05D004753 ORTHO05D005920 2.8e-102 376.7 304 61.5
Duzib138G1754 Durio zibethinus HOM05D004753 ORTHO05D005920 2.8e-102 376.7 304 60.5
TWI59G0801 Tripterygium wilfordii HOM05D004753 ORTHO05D005920 6.3e-102 375.6 301 61.8
TAR636G3371 Trochodendron aralioides HOM05D004753 ORTHO05D005920 1.4e-101 374.4 333 57.7
Nitab4.5_0002687g0080 Nicotiana tabacum HOM05D004753 ORTHO05D005920 1.8e-101 374.0 304 61.2
Gohir.A08G117800 Gossypium hirsutum HOM05D004753 ORTHO05D005920 4.1e-101 372.9 306 59.2
Nitab4.5_0008999g0010 Nicotiana tabacum HOM05D004753 ORTHO05D005920 5.3e-101 372.5 291 62.5
CAN.G134.43 Capsicum annuum HOM05D004753 ORTHO05D005920 7.0e-101 372.1 313 60.7
Duzib133G0229 Durio zibethinus HOM05D004753 ORTHO05D005920 7.0e-101 372.1 299 60.9
CANSAT54G1658 Cannabis sativa HOM05D004753 ORTHO05D005920 9.1e-101 371.7 302 60.3
DCAR_012396 Daucus carota HOM05D004753 ORTHO05D005920 1.2e-100 371.3 296 61.1
GSVIVG01028012001 Vitis vinifera HOM05D004753 ORTHO05D005920 1.2e-100 371.3 325 56.6
Glyma.11G100700 Glycine max HOM05D004753 ORTHO05D005920 2.0e-100 370.5 292 63.0
Sc17g0002740 Simmondsia chinensis HOM05D004753 ORTHO05D005920 2.7e-100 370.2 297 61.3
PSO832G3876 Papaver somniferum HOM05D004753 ORTHO05D005920 4.5e-100 369.4 305 61.3
Gohir.D08G138800 Gossypium hirsutum HOM05D004753 ORTHO05D005920 5.9e-100 369.0 291 61.9
HPP92_002997 Vanilla planifolia HOM05D004753 ORTHO05D005920 5.9e-100 369.0 300 59.7
Sopen01g040500 Solanum pennellii HOM05D004753 ORTHO05D005920 7.7e-100 368.6 315 59.7
Aa31LG11G1720 Aethionema arabicum HOM05D004753 ORTHO05D005920 1.0e-99 368.2 308 57.1
Solyc01g096800.3 Solanum lycopersicum HOM05D004753 ORTHO05D005920 1.0e-99 368.2 315 59.7
PSO210G3006 Papaver somniferum HOM05D004753 ORTHO05D005920 1.3e-99 367.9 305 61.0
PSO170G0569 Papaver somniferum HOM05D004753 ORTHO05D005920 1.7e-99 367.5 305 60.3
Sp2g24970 Schrenkiella parvula HOM05D004753 ORTHO05D005920 1.7e-99 367.5 289 61.2
Phvul.011G029700 Phaseolus vulgaris HOM05D004753 ORTHO05D005920 2.9e-99 366.7 297 61.3
CARHR275530 Cardamine hirsuta HOM05D004753 ORTHO05D005920 3.8e-99 366.3 304 59.5
Lj2A1194G52 Lonicera japonica HOM05D004753 ORTHO05D005920 3.8e-99 366.3 301 59.1
SGA_v2.0_scaffold1G00368 Striga asiatica HOM05D004753 ORTHO05D005920 3.8e-99 366.3 328 57.6
ECA238G0492 Erigeron canadensis HOM05D004753 ORTHO05D005920 5.0e-99 365.9 302 59.9
Glyma.12G026700 Glycine max HOM05D004753 ORTHO05D005920 5.0e-99 365.9 292 62.3
Gorai.004G142400 Gossypium raimondii HOM05D004753 ORTHO05D005920 5.0e-99 365.9 291 61.5
Hund05425 Selenicereus undatus HOM05D004753 ORTHO05D005920 6.5e-99 365.5 301 60.8
Lalb_Chr01g0001441 Lupinus albus HOM05D004753 ORTHO05D005920 8.5e-99 365.2 312 58.7
PSO017G3074 Papaver somniferum HOM05D004753 ORTHO05D005920 1.1e-98 364.8 305 60.0
CBR_g227 Chara braunii HOM05D004753 ORTHO05D005920 1.9e-98 364.0 320 60.3
AUR62008626 Chenopodium quinoa HOM05D004753 ORTHO05D005920 2.5e-98 363.6 303 60.4
Rhsim01G0243400 Rhododendron simsii HOM05D004753 ORTHO05D005920 2.5e-98 363.6 365 53.4
Lj3g0027269 Lotus japonicus HOM05D004753 ORTHO05D005920 4.2e-98 362.8 293 61.1
AL8G38530 Arabidopsis lyrata HOM05D004753 ORTHO05D005920 9.4e-98 361.7 303 59.1
Thhalv10004503m.g Eutrema salsugineum HOM05D004753 ORTHO05D005920 1.2e-97 361.3 301 59.1
VMungo1127G1640 Vigna mungo HOM05D004753 ORTHO05D005920 1.2e-97 361.3 314 57.6
BcaC04g23436 Brassica carinata HOM05D004753 ORTHO05D005920 2.7e-97 360.1 295 59.0
C09p08350 Brassica napus HOM05D004753 ORTHO05D005920 2.7e-97 360.1 295 59.0
BolC9t53745H Brassica oleracea HOM05D004753 ORTHO05D005920 2.7e-97 360.1 295 59.0
Carub.0008s2246 Capsella rubella HOM05D004753 ORTHO05D005920 2.7e-97 360.1 303 58.1
BcaC01g02428 Brassica carinata HOM05D004753 ORTHO05D005920 6.1e-97 359.0 302 58.3
C03p65390 Brassica napus HOM05D004753 ORTHO05D005920 6.1e-97 359.0 302 58.3
BolC3t18792H Brassica oleracea HOM05D004753 ORTHO05D005920 6.1e-97 359.0 302 58.3
BraA09t36398Z Brassica rapa HOM05D004753 ORTHO05D005920 6.1e-97 359.0 315 56.5
A06p28420 Brassica napus HOM05D004753 ORTHO05D005920 8.0e-97 358.6 302 58.3
A09p07440 Brassica napus HOM05D004753 ORTHO05D005920 8.0e-97 358.6 315 56.5
BraA06t25786Z Brassica rapa HOM05D004753 ORTHO05D005920 8.0e-97 358.6 302 58.3
AT5G61770 Arabidopsis thaliana HOM05D004753 ORTHO05D005920 1.8e-96 357.5 303 58.4
Ca_19020_v3 Cicer arietinum L. HOM05D004753 ORTHO05D005920 2.3e-96 357.1 290 59.3
arahy.Tifrunner.gnm1.ann1.89EUFG Arachis hypogaea HOM05D004753 ORTHO05D005920 1.2e-95 354.8 288 60.8
arahy.Tifrunner.gnm1.ann1.B7L3V1 Arachis hypogaea HOM05D004753 ORTHO05D005920 1.5e-95 354.4 288 60.8
BcaB02g09600 Brassica carinata HOM05D004753 ORTHO05D005920 2.0e-95 354.0 304 57.2
TPR.G32348 Trifolium pratense HOM05D004753 ORTHO05D005920 5.7e-95 352.4 291 59.1
Actinidia15830 Actinidia chinensis HOM05D004753 ORTHO05D005920 7.5e-95 352.1 303 61.1
FAN24G0086 Fragaria x ananassa HOM05D004753 ORTHO05D005920 6.3e-94 349.0 290 60.0
FvH4_2g25700 Fragaria vesca HOM05D004753 ORTHO05D005920 2.4e-93 347.1 315 57.1
Cre10.g450879 Chlamydomonas reinhardtii HOM05D004753 ORTHO05D005920 5.4e-93 345.9 330 54.5
HanXRQChr12g0368811 Helianthus annuus HOM05D004753 ORTHO05D005920 5.4e-93 345.9 323 56.3
RcHm_v2.0_Chr6g0293981 Rosa chinensis HOM05D004753 ORTHO05D005920 9.1e-93 345.1 316 55.7
unitig_26.g10170 Utricularia gibba HOM05D004753 ORTHO05D005920 2.7e-92 343.6 256 65.2
Zm00001eb016460 Zea mays HOM05D004753 ORTHO05D005920 2.7e-92 343.6 283 60.1
BcaNung01420 Brassica carinata HOM05D004753 ORTHO05D005920 1.7e-91 340.9 305 55.7
FAN27G0535 Fragaria x ananassa HOM05D004753 ORTHO05D005920 6.6e-91 339.0 320 55.6
FAN15G2487 Fragaria x ananassa HOM05D004753 ORTHO05D005920 8.6e-91 338.6 320 55.6
FAN20G2170 Fragaria x ananassa HOM05D004753 ORTHO05D005920 8.6e-91 338.6 320 55.6
Os03g0343700 Oryza sativa ssp. japonica HOM05D004753 ORTHO05D005920 8.6e-91 338.6 291 57.4
Dinv37873 Davidia involucrata HOM05D004753 ORTHO05D005920 1.5e-90 337.8 271 61.3
MCO08G191 Micromonas commoda HOM05D004753 ORTHO05D005920 1.1e-85 321.6 335 52.2
AUR62033145 Chenopodium quinoa HOM05D004753 ORTHO05D005920 1.8e-85 320.9 303 55.4
Ah.08g213470 Amaranthus hybridus HOM05D004753 ORTHO05D005920 3.9e-83 313.2 297 55.6
Ah.15g093220 Amaranthus hybridus HOM05D004753 ORTHO05D005920 1.9e-82 310.8 286 56.6
CDE09G1083 Ceratophyllum demersum HOM05D004753 ORTHO05D005920 4.4e-79 299.7 254 59.1
Medtr4g075050 Medicago truncatula HOM05D004753 ORTHO05D005920 1.2e-76 291.6 291 51.9
TAR365G0243 Trochodendron aralioides HOM05D004753 ORTHO05D005920 1.2e-73 281.6 235 57.4
Gorai.002G117300 Gossypium raimondii HOM05D004753 ORTHO05D005920 1.6e-73 281.2 288 52.1
Prupe.8G261200 Prunus persica HOM05D004753 ORTHO05D005920 1.8e-72 277.7 230 59.1
Actinidia01484 Actinidia chinensis HOM05D004753 ORTHO05D005920 4.4e-71 273.1 273 54.9
Psat7g177400 Pisum sativum HOM05D004753 ORTHO05D005920 4.4e-71 273.1 234 58.1
Aqoxy311s002 Aquilegia oxysepala HOM05D004753 ORTHO05D005920 9.8e-71 271.9 212 61.3
PRCOL_00006477 Prasinoderma coloniale HOM05D004753 ORTHO05D005920 1.2e-55 221.9 256 45.3
Actinidia32213 Actinidia chinensis HOM05D004753 ORTHO05D005920 2.0e-55 221.1 178 61.2
THA.LOC104801723 Tarenaya hassleriana HOM05D004753 ORTHO05D005920 2.4e-53 214.2 149 65.1
Gorai.012G092400 Gossypium raimondii HOM05D004753 ORTHO05D005920 2.0e-47 194.5 158 61.4
Sed0023746 Sechium edule HOM05D004753 ORTHO05D005920 3.8e-46 190.3 255 43.5
Cfa026076 Carpinus fangiana HOM05D004753 ORTHO05D005920 5.4e-45 186.4 415 34.0
Haze_27315 Corylus avellana HOM05D004753 ORTHO05D005920 9.0e-40 169.1 286 37.1
AUR62033152 Chenopodium quinoa HOM05D004753 ORTHO05D005920 1.1e-32 145.6 146 51.4
Migut.B01152 Erythranthe guttata HOM05D004753 ORTHO05D005920 4.5e-31 140.2 112 59.8
Gohir.D11G077800 Gossypium hirsutum HOM05D004753 ORTHO05D005920 2.5e-26 124.4 198 37.4
Actinidia16175 Actinidia chinensis HOM05D004753 ORTHO05D005920 2.6e-23 114.4 81 65.4
Gohir.D04G081932 Gossypium hirsutum HOM05D004753 ORTHO05D005920 3.4e-23 114.0 119 47.9
Gohir.D02G011800 Gossypium hirsutum HOM05D004753 ORTHO05D005920 1.0e-22 112.5 119 47.1
Gorai.005G015000 Gossypium raimondii HOM05D004753 ORTHO05D005920 1.0e-22 112.5 119 47.1
arahy.Tifrunner.gnm1.ann1.81M7HI Arachis hypogaea HOM05D004753 ORTHO05D005920 6.5e-22 109.8 97 60.8
MD08G1232400 Malus domestica HOM05D004753 ORTHO05D005920 6.5e-22 109.8 86 57.0
arahy.Tifrunner.gnm1.ann1.JRXS1U Arachis hypogaea HOM05D004753 ORTHO05D005920 1.4e-21 108.6 95 61.1
Gorai.007G256100 Gossypium raimondii HOM05D004753 ORTHO05D005920 3.8e-14 84.0 81 55.6
PGSC0003DMG400004411 Solanum tuberosum HOM05D004753 ORTHO05D005920 1.1e-10 72.4 53 60.4
Hma1.2p1_1471F.1_g285675 Hydrangea macrophylla HOM05D004753 ORTHO05D005920 4.1e-08 63.9 47 59.6
Hma1.2p1_1471F.1_g285690 Hydrangea macrophylla HOM05D004753 ORTHO05D005920 4.1e-08 63.9 47 59.6
TAR629G0138 Trochodendron aralioides HOM05D004753 ORTHO05D005920 4.1e-08 63.9 64 51.6
CANSAT21G1846 Cannabis sativa HOM05D000521 ORTHO05D000384 1.5e-07 62.0 41 70.7
Migut.D00217 Erythranthe guttata HOM05D004753 ORTHO05D005920 2.6e-07 61.2 71 50.7
TAR624G1091 Trochodendron aralioides HOM05D004877 ORTHO05D005942 3.8e-06 57.4 55 54.5


User provided reference genes

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