Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c2_23370 Physcomitrium patens HOM05D004257 ORTHO05D005202 2.2e-61 238.8 123 100.0
Pp3c24_11040 Physcomitrium patens HOM05D004257 ORTHO05D005202 3.9e-34 148.3 121 66.9
Pp3c5_14840 Physcomitrium patens HOM05D004257 ORTHO05D005202 1.1e-31 140.2 121 64.5
SEGI_22917 Sequoiadendron giganteum HOM05D004257 ORTHO05D005202 1.8e-23 112.8 121 52.9
SEGI_29481 Sequoiadendron giganteum HOM05D004257 ORTHO05D005202 1.8e-23 112.8 121 52.9
Pp3c23_13620 Physcomitrium patens HOM05D004257 ORTHO05D005202 3.4e-22 108.6 121 48.8
AagrBONN_evm.TU.Sc2ySwM_344.3818 Anthoceros agrestis HOM05D004257 ORTHO05D005202 7.6e-22 107.5 121 51.2
AagrBONN_evm.TU.Sc2ySwM_344.1200 Anthoceros agrestis HOM05D004257 ORTHO05D005202 2.2e-21 105.9 121 49.6
Mapoly0023s0132 Marchantia polymorpha HOM05D004257 ORTHO05D005202 2.5e-20 102.4 121 48.8
CBR_g20340 Chara braunii HOM05D004257 ORTHO05D005202 2.7e-19 99.0 115 48.7
SMO367G0216 Selaginella moellendorffii HOM05D004257 ORTHO05D005202 1.0e-18 97.1 121 43.8
TWI12G0832 Tripterygium wilfordii HOM05D004257 ORTHO05D005202 1.8e-18 96.3 118 49.2
TWI18G0956 Tripterygium wilfordii HOM05D004257 ORTHO05D005202 3.9e-18 95.1 118 47.5
Dinv06012 Davidia involucrata HOM05D004257 ORTHO05D005202 6.7e-18 94.4 118 47.5
SGA_v2.0_scaffold90G27780 Striga asiatica HOM05D004257 ORTHO05D005202 6.7e-18 94.4 118 44.1
Nn3g19680 Nelumbo nucifera HOM05D004257 ORTHO05D005202 1.1e-17 93.6 118 46.6
Hma1.2p1_0075F.1_g039210 Hydrangea macrophylla HOM05D004257 ORTHO05D005202 1.5e-17 93.2 118 46.6
Lj5A229T68 Lonicera japonica HOM05D004257 ORTHO05D005202 1.5e-17 93.2 118 45.8
Migut.O00233 Erythranthe guttata HOM05D004257 ORTHO05D005202 1.9e-17 92.8 118 45.8
Lalb_Chr01g0019631 Lupinus albus HOM05D004257 ORTHO05D005202 1.9e-17 92.8 118 47.5
PSO210G0560 Papaver somniferum HOM05D004257 ORTHO05D005202 2.5e-17 92.4 118 46.6
Manes.12G033300 Manihot esculenta HOM05D004257 ORTHO05D005202 3.3e-17 92.0 118 44.9
Nitab4.5_0004454g0010 Nicotiana tabacum HOM05D004257 ORTHO05D005202 3.3e-17 92.0 118 44.9
PSO832G0932 Papaver somniferum HOM05D004257 ORTHO05D005202 3.3e-17 92.0 118 46.6
vmacro10363 Vaccinium macrocarpon HOM05D004257 ORTHO05D005202 3.3e-17 92.0 118 47.5
Cfa002439 Carpinus fangiana HOM05D004257 ORTHO05D005202 4.3e-17 91.7 118 44.9
Nitab4.5_0000936g0060 Nicotiana tabacum HOM05D004257 ORTHO05D005202 4.3e-17 91.7 118 44.9
PSO470G0001 Papaver somniferum HOM05D004257 ORTHO05D005202 4.3e-17 91.7 118 45.8
PSO675G6112 Papaver somniferum HOM05D004257 ORTHO05D005202 4.3e-17 91.7 118 45.8
PSO675G8702 Papaver somniferum HOM05D004257 ORTHO05D005202 4.3e-17 91.7 118 45.8
PSO675G8755 Papaver somniferum HOM05D004257 ORTHO05D005202 4.3e-17 91.7 118 45.8
Hund06906 Selenicereus undatus HOM05D004257 ORTHO05D005202 5.7e-17 91.3 118 44.9
Ah.04g163130 Amaranthus hybridus HOM05D004257 ORTHO05D005202 7.4e-17 90.9 118 45.8
MSTRG.11529 Avicennia marina HOM05D004257 ORTHO05D005202 7.4e-17 90.9 118 45.8
MSTRG.23192 Avicennia marina HOM05D004257 ORTHO05D005202 7.4e-17 90.9 118 46.6
EL10Ac4g09002 Beta vulgaris HOM05D004257 ORTHO05D005202 7.4e-17 90.9 118 45.8
CSS0006901 Camellia sinensis var. sinensis HOM05D004257 ORTHO05D005202 7.4e-17 90.9 118 45.8
CSS0016221 Camellia sinensis var. sinensis HOM05D004257 ORTHO05D005202 7.4e-17 90.9 118 45.8
CAN.G637.23 Capsicum annuum HOM05D004257 ORTHO05D005202 7.4e-17 90.9 118 44.1
MBI07_g16916_MAGBIO Magnolia biondii HOM05D004257 ORTHO05D005202 7.4e-17 90.9 118 45.8
Potri.005G225700 Populus trichocarpa HOM05D004257 ORTHO05D005202 7.4e-17 90.9 118 45.8
Thecc.01G256600 Theobroma cacao HOM05D004257 ORTHO05D005202 7.4e-17 90.9 118 44.9
DCAR_014267 Daucus carota HOM05D004257 ORTHO05D005202 9.7e-17 90.5 119 44.5
Peaxi162Scf00171g00722 Petunia axillaris HOM05D004257 ORTHO05D005202 9.7e-17 90.5 118 44.9
BcaC02g09050 Brassica carinata HOM05D004257 ORTHO05D005202 1.3e-16 90.1 118 44.9
C04p37820 Brassica napus HOM05D004257 ORTHO05D005202 1.3e-16 90.1 118 44.9
BolC4t25358H Brassica oleracea HOM05D004257 ORTHO05D005202 1.3e-16 90.1 118 44.9
Carub.0005s2129 Capsella rubella HOM05D004257 ORTHO05D005202 1.3e-16 90.1 118 44.1
CDE04G1210 Ceratophyllum demersum HOM05D004257 ORTHO05D005202 1.3e-16 90.1 118 42.4
Gohir.A11G131450 Gossypium hirsutum HOM05D004257 ORTHO05D005202 1.3e-16 90.1 118 45.8
Gohir.D07G155600 Gossypium hirsutum HOM05D004257 ORTHO05D005202 1.3e-16 90.1 118 45.8
Gorai.001G178500 Gossypium raimondii HOM05D004257 ORTHO05D005202 1.3e-16 90.1 118 45.8
Sabra02G0030200 Salix brachista HOM05D004257 ORTHO05D005202 1.3e-16 90.1 118 45.8
Aqoxy2G03662 Aquilegia oxysepala HOM05D004257 ORTHO05D005202 1.7e-16 89.7 115 43.5
AL5G35770 Arabidopsis lyrata HOM05D004257 ORTHO05D005202 1.7e-16 89.7 118 44.1
AT3G54690 Arabidopsis thaliana HOM05D004257 ORTHO05D005202 1.7e-16 89.7 118 44.1
CANSAT35G1745 Cannabis sativa HOM05D004257 ORTHO05D005202 1.7e-16 89.7 118 44.1
COL.COLO4_04031 Corchorus olitorius HOM05D004257 ORTHO05D005202 1.7e-16 89.7 118 44.9
Duzib138G0002 Durio zibethinus HOM05D004257 ORTHO05D005202 1.7e-16 89.7 118 44.9
Gohir.A07G149400 Gossypium hirsutum HOM05D004257 ORTHO05D005202 1.7e-16 89.7 118 44.9
PGSC0003DMG402031052 Solanum tuberosum HOM05D004257 ORTHO05D005202 2.2e-16 89.4 118 43.2
Ca_08681_v3 Cicer arietinum L. HOM05D004257 ORTHO05D005202 2.8e-16 89.0 118 44.1
Cc04_g09710 Coffea canephora HOM05D004257 ORTHO05D005202 2.8e-16 89.0 118 47.5
QL09p039362 Quercus lobata HOM05D004257 ORTHO05D005202 2.8e-16 89.0 118 44.9
Solyc03g098140.3 Solanum lycopersicum HOM05D004257 ORTHO05D005202 2.8e-16 89.0 118 43.2
Sopen03g028840 Solanum pennellii HOM05D004257 ORTHO05D005202 2.8e-16 89.0 118 43.2
DCAR_010071 Daucus carota HOM05D004257 ORTHO05D005202 3.7e-16 88.6 118 44.1
Duzib133G1463 Durio zibethinus HOM05D004257 ORTHO05D005202 3.7e-16 88.6 118 44.1
Gohir.D11G137300 Gossypium hirsutum HOM05D004257 ORTHO05D005202 3.7e-16 88.6 118 44.9
Gorai.007G147100 Gossypium raimondii HOM05D004257 ORTHO05D005202 3.7e-16 88.6 118 44.9
Haze_24645 Corylus avellana HOM05D004257 ORTHO05D005202 4.8e-16 88.2 118 43.2
CsaV3_3G022160 Cucumis sativus L. HOM05D004257 ORTHO05D005202 4.8e-16 88.2 118 43.2
Actinidia38939 Actinidia chinensis HOM05D004257 ORTHO05D005202 6.3e-16 87.8 118 45.8
CANSAT01G0143 Cannabis sativa HOM05D004257 ORTHO05D005202 6.3e-16 87.8 118 44.9
ATR0736G010 Amborella trichopoda HOM05D004257 ORTHO05D005202 8.2e-16 87.4 118 43.2
PGR044G0150 Punica granatum HOM05D004257 ORTHO05D005202 8.2e-16 87.4 109 47.7
Sed0007154 Sechium edule HOM05D004257 ORTHO05D005202 8.2e-16 87.4 109 45.0
Sc09g0004250 Simmondsia chinensis HOM05D004257 ORTHO05D005202 8.2e-16 87.4 115 47.0
TAR362G0002 Trochodendron aralioides HOM05D004257 ORTHO05D005202 8.2e-16 87.4 118 44.1
A04p05160 Brassica napus HOM05D004257 ORTHO05D005202 1.1e-15 87.0 118 44.1
BraA04t16226Z Brassica rapa HOM05D004257 ORTHO05D005202 1.1e-15 87.0 118 44.1
AUR62004833 Chenopodium quinoa HOM05D004257 ORTHO05D005202 1.1e-15 87.0 118 44.9
ClCG07G001120 Citrullus lanatus HOM05D004257 ORTHO05D005202 1.1e-15 87.0 112 43.8
Thhalv10010498m.g Eutrema salsugineum HOM05D004257 ORTHO05D005202 1.1e-15 87.0 118 43.2
Potri.002G037400 Populus trichocarpa HOM05D004257 ORTHO05D005202 1.1e-15 87.0 118 44.9
TAR365G0817 Trochodendron aralioides HOM05D004257 ORTHO05D005202 1.1e-15 87.0 118 43.2
Cpa.g.sc473.3 Carica papaya HOM05D004257 ORTHO05D005202 1.4e-15 86.7 118 42.4
Eucgr.K03257 Eucalyptus grandis HOM05D004257 ORTHO05D005202 1.4e-15 86.7 109 45.9
Sed0014699 Sechium edule HOM05D004257 ORTHO05D005202 1.4e-15 86.7 112 44.6
Aqoxy5G00217 Aquilegia oxysepala HOM05D004257 ORTHO05D005202 1.8e-15 86.3 118 44.1
BcaB02g07726 Brassica carinata HOM05D004257 ORTHO05D005202 1.8e-15 86.3 118 43.2
CiPaw.03G265600 Carya illinoinensis HOM05D004257 ORTHO05D005202 1.8e-15 86.3 118 40.7
AUR62040921 Chenopodium quinoa HOM05D004257 ORTHO05D005202 1.8e-15 86.3 118 44.1
MELO3C012874.2 Cucumis melo HOM05D004257 ORTHO05D005202 1.8e-15 86.3 112 44.6
Medtr7g097060 Medicago truncatula HOM05D004257 ORTHO05D005202 1.8e-15 86.3 118 44.1
Psat3g056800 Pisum sativum HOM05D004257 ORTHO05D005202 1.8e-15 86.3 118 44.1
SalBow5G3197 Salvia bowleyana HOM05D004257 ORTHO05D005202 1.8e-15 86.3 118 43.2
SalBow5G4297 Salvia bowleyana HOM05D004257 ORTHO05D005202 1.8e-15 86.3 118 43.2
CiPaw.04G187400 Carya illinoinensis HOM05D004257 ORTHO05D005202 2.4e-15 85.9 118 40.7
FAN15G2746 Fragaria x ananassa HOM05D004257 ORTHO05D005202 2.4e-15 85.9 111 45.9
FAN20G1479 Fragaria x ananassa HOM05D004257 ORTHO05D005202 2.4e-15 85.9 111 45.9
FAN27G2888 Fragaria x ananassa HOM05D004257 ORTHO05D005202 2.4e-15 85.9 111 45.9
BcaC08g44693 Brassica carinata HOM05D004257 ORTHO05D005202 3.1e-15 85.5 118 41.5
C06p22290 Brassica napus HOM05D004257 ORTHO05D005202 3.1e-15 85.5 118 41.5
BolC6t37415H Brassica oleracea HOM05D004257 ORTHO05D005202 3.1e-15 85.5 118 41.5
BraA07t29902Z Brassica rapa HOM05D004257 ORTHO05D005202 3.1e-15 85.5 118 41.5
FvH4_2g21300 Fragaria vesca HOM05D004257 ORTHO05D005202 3.1e-15 85.5 111 45.9
FAN24G1061 Fragaria x ananassa HOM05D004257 ORTHO05D005202 3.1e-15 85.5 111 45.9
Lj1g0005279 Lotus japonicus HOM05D004257 ORTHO05D005202 3.1e-15 85.5 118 43.2
BcaC05g28242 Brassica carinata HOM05D004257 ORTHO05D005202 4.1e-15 85.1 118 41.5
C05p42800 Brassica napus HOM05D004257 ORTHO05D005202 4.1e-15 85.1 118 41.5
BolC5t33007H Brassica oleracea HOM05D004257 ORTHO05D005202 4.1e-15 85.1 118 41.5
CARHR164610 Cardamine hirsuta HOM05D004257 ORTHO05D005202 4.1e-15 85.1 118 42.4
RcHm_v2.0_Chr6g0287891 Rosa chinensis HOM05D004257 ORTHO05D005202 4.1e-15 85.1 118 44.1
Sp5g07760 Schrenkiella parvula HOM05D004257 ORTHO05D005202 4.1e-15 85.1 118 42.4
Ciclev10021043m.g Citrus clementina HOM05D004257 ORTHO05D005202 5.3e-15 84.7 118 40.7
Prupe.8G222200 Prunus persica HOM05D004257 ORTHO05D005202 5.3e-15 84.7 107 47.7
TPR.G7131 Trifolium pratense HOM05D004257 ORTHO05D005202 5.3e-15 84.7 118 43.2
arahy.Tifrunner.gnm1.ann1.63G7RJ Arachis hypogaea HOM05D004257 ORTHO05D005202 1.2e-14 83.6 109 46.8
Atru.chr5.1712 Acer truncatum HOM05D004257 ORTHO05D005202 2.0e-14 82.8 118 40.7
Aa31sc35G30 Aethionema arabicum HOM05D004257 ORTHO05D005202 2.0e-14 82.8 118 41.5
THA.LOC104825258 Tarenaya hassleriana HOM05D004257 ORTHO05D005202 2.0e-14 82.8 118 41.5
Glyma.19G165400 Glycine max HOM05D004257 ORTHO05D005202 2.6e-14 82.4 118 41.5
Phvul.001G161500 Phaseolus vulgaris HOM05D004257 ORTHO05D005202 2.6e-14 82.4 118 41.5
arahy.Tifrunner.gnm1.ann1.BG7UA0 Arachis hypogaea HOM05D004257 ORTHO05D005202 3.4e-14 82.0 109 46.8
MD10G1182800 Malus domestica HOM05D004257 ORTHO05D005202 3.4e-14 82.0 107 46.7
VMungo1383G3387 Vigna mungo HOM05D004257 ORTHO05D005202 3.4e-14 82.0 118 41.5
MD05G1195500 Malus domestica HOM05D004257 ORTHO05D005202 4.5e-14 81.6 107 46.7
Lsat_1_v5_gn_3_39581 Lactuca sativa HOM05D004257 ORTHO05D005202 1.0e-13 80.5 119 40.3
HanXRQChr17g0542071 Helianthus annuus HOM05D004257 ORTHO05D005202 2.9e-13 79.0 119 39.5
AagrBONN_evm.TU.Sc2ySwM_228.5394 Anthoceros agrestis HOM05D004257 ORTHO05D005202 1.1e-12 77.0 104 44.2
HPP92_017366 Vanilla planifolia HOM05D004257 ORTHO05D005202 1.1e-12 77.0 116 42.2
HPP92_010358 Vanilla planifolia HOM05D004257 ORTHO05D005202 2.5e-12 75.9 116 42.2
Zm00001eb207770 Zea mays HOM05D004257 ORTHO05D005202 2.3e-10 69.3 119 37.8
Os02g0158300 Oryza sativa ssp. japonica HOM05D004257 ORTHO05D005202 3.9e-10 68.6 119 39.5
CSS0001153 Camellia sinensis var. sinensis HOM05D004257 ORTHO05D005202 1.5e-09 66.6 118 37.3
CSS0049630 Camellia sinensis var. sinensis HOM05D004257 ORTHO05D005202 1.5e-09 66.6 124 38.7
Zm00001eb232580 Zea mays HOM05D004257 ORTHO05D005202 1.5e-09 66.6 119 37.8
unitig_0.g1405 Utricularia gibba HOM05D004257 ORTHO05D005202 1.8e-07 59.7 112 37.5
CDE02G1046 Ceratophyllum demersum HOM05D004257 ORTHO05D005202 5.3e-07 58.2 76 42.1
Oeu023635.1 Olea europaea HOM05D004257 ORTHO05D005202 3.4e-06 55.5 118 35.6


User provided reference genes

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