Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c2_21720 Physcomitrium patens HOM05D004227 ORTHO05D005027 1.8e-84 315.8 154 100.0
Pp3c1_16440 Physcomitrium patens HOM05D004227 ORTHO05D005027 1.7e-82 309.3 154 98.1
AagrBONN_evm.TU.Sc2ySwM_344.2698 Anthoceros agrestis HOM05D004227 ORTHO05D005027 3.2e-78 295.0 149 94.0
SEGI_06195 Sequoiadendron giganteum HOM05D004227 ORTHO05D005027 3.2e-78 295.0 149 94.0
Mapoly0032s0045 Marchantia polymorpha HOM05D004227 ORTHO05D005027 5.5e-78 294.3 149 94.0
SEGI_27062 Sequoiadendron giganteum HOM05D004227 ORTHO05D005027 1.2e-77 293.1 149 93.3
Gohir.A08G057900 Gossypium hirsutum HOM05D004227 ORTHO05D005027 6.1e-77 290.8 148 93.9
Gohir.D08G067200 Gossypium hirsutum HOM05D004227 ORTHO05D005027 6.1e-77 290.8 148 93.9
Gorai.004G069800 Gossypium raimondii HOM05D004227 ORTHO05D005027 6.1e-77 290.8 148 93.9
Actinidia13618 Actinidia chinensis HOM05D004227 ORTHO05D005027 8.0e-77 290.4 154 89.0
Sed0011885 Sechium edule HOM05D004227 ORTHO05D005027 1.0e-76 290.0 154 90.3
MSTRG.27225 Avicennia marina HOM05D004227 ORTHO05D005027 1.8e-76 289.3 148 92.6
Hma1.2p1_1508F.1_g287710 Hydrangea macrophylla HOM05D004227 ORTHO05D005027 1.8e-76 289.3 148 93.2
Duzib138G0704 Durio zibethinus HOM05D004227 ORTHO05D005027 2.3e-76 288.9 148 93.2
CSS0010737 Camellia sinensis var. sinensis HOM05D004227 ORTHO05D005027 4.0e-76 288.1 154 88.3
Migut.F00534 Erythranthe guttata HOM05D004227 ORTHO05D005027 4.0e-76 288.1 148 91.9
Gohir.D11G079800 Gossypium hirsutum HOM05D004227 ORTHO05D005027 4.0e-76 288.1 148 92.6
Thecc.01G396100 Theobroma cacao HOM05D004227 ORTHO05D005027 4.0e-76 288.1 148 92.6
TWI23G1276 Tripterygium wilfordii HOM05D004227 ORTHO05D005027 4.0e-76 288.1 148 92.6
Actinidia31661 Actinidia chinensis HOM05D004227 ORTHO05D005027 5.2e-76 287.7 148 91.2
Gohir.A11G075100 Gossypium hirsutum HOM05D004227 ORTHO05D005027 5.2e-76 287.7 148 92.6
Gorai.007G085400 Gossypium raimondii HOM05D004227 ORTHO05D005027 5.2e-76 287.7 148 92.6
Ciclev10022690m.g Citrus clementina HOM05D004227 ORTHO05D005027 6.8e-76 287.3 148 92.6
Duzib133G0083 Durio zibethinus HOM05D004227 ORTHO05D005027 6.8e-76 287.3 148 92.6
CsaV3_3G007250 Cucumis sativus L. HOM05D004227 ORTHO05D005027 8.8e-76 287.0 154 90.3
Nitab4.5_0003321g0070 Nicotiana tabacum HOM05D004227 ORTHO05D005027 1.2e-75 286.6 148 91.2
Rhsim03G0159900 Rhododendron simsii HOM05D004227 ORTHO05D005027 1.2e-75 286.6 145 93.1
Hund24961 Selenicereus undatus HOM05D004227 ORTHO05D005027 1.2e-75 286.6 148 92.6
TAR636G2330 Trochodendron aralioides HOM05D004227 ORTHO05D005027 1.2e-75 286.6 148 91.9
SGA_v2.0_scaffold44G16581 Striga asiatica HOM05D004227 ORTHO05D005027 1.5e-75 286.2 148 91.9
TWI59G0764 Tripterygium wilfordii HOM05D004227 ORTHO05D005027 1.5e-75 286.2 148 91.2
Ah.01g017970 Amaranthus hybridus HOM05D004227 ORTHO05D005027 2.0e-75 285.8 152 90.1
arahy.Tifrunner.gnm1.ann1.CPA9TZ Arachis hypogaea HOM05D004227 ORTHO05D005027 2.0e-75 285.8 151 90.1
arahy.Tifrunner.gnm1.ann1.RC63K2 Arachis hypogaea HOM05D004227 ORTHO05D005027 2.0e-75 285.8 151 90.1
CDE06G1820 Ceratophyllum demersum HOM05D004227 ORTHO05D005027 2.0e-75 285.8 148 91.2
CDE06G1835 Ceratophyllum demersum HOM05D004227 ORTHO05D005027 2.0e-75 285.8 148 91.2
Dinv43609 Davidia involucrata HOM05D004227 ORTHO05D005027 2.0e-75 285.8 148 91.9
Dinv44054 Davidia involucrata HOM05D004227 ORTHO05D005027 2.0e-75 285.8 149 91.3
HanXRQChr09g0252831 Helianthus annuus HOM05D004227 ORTHO05D005027 2.0e-75 285.8 149 90.6
Nitab4.5_0002359g0040 Nicotiana tabacum HOM05D004227 ORTHO05D005027 2.0e-75 285.8 148 91.2
PSO063G7112 Papaver somniferum HOM05D004227 ORTHO05D005027 2.0e-75 285.8 148 92.6
PSO782G5116 Papaver somniferum HOM05D004227 ORTHO05D005027 2.0e-75 285.8 148 92.6
COL.COLO4_12397 Corchorus olitorius HOM05D004227 ORTHO05D005027 2.6e-75 285.4 148 92.6
ECA232G0872 Erigeron canadensis HOM05D004227 ORTHO05D005027 3.4e-75 285.0 145 92.4
Lsat_1_v5_gn_0_10121 Lactuca sativa HOM05D004227 ORTHO05D005027 3.4e-75 285.0 145 92.4
Nn1g00815 Nelumbo nucifera HOM05D004227 ORTHO05D005027 3.4e-75 285.0 148 91.9
Cpa.g.sc22.26 Carica papaya HOM05D004227 ORTHO05D005027 5.7e-75 284.3 148 90.5
Nitab4.5_0002153g0060 Nicotiana tabacum HOM05D004227 ORTHO05D005027 5.7e-75 284.3 147 91.8
CANSAT25G0195 Cannabis sativa HOM05D004227 ORTHO05D005027 7.5e-75 283.9 154 88.3
Potri.014G049700 Populus trichocarpa HOM05D004227 ORTHO05D005027 7.5e-75 283.9 152 88.8
Potri.002G138500 Populus trichocarpa HOM05D004227 ORTHO05D005027 9.8e-75 283.5 154 88.3
Glyma.07G115700 Glycine max HOM05D004227 ORTHO05D005027 1.7e-74 282.7 148 90.5
PGR004G2111 Punica granatum HOM05D004227 ORTHO05D005027 1.7e-74 282.7 154 88.3
AUR62014174 Chenopodium quinoa HOM05D004227 ORTHO05D005027 2.2e-74 282.3 148 91.9
Ca_15636_v3 Cicer arietinum L. HOM05D004227 ORTHO05D005027 2.2e-74 282.3 148 90.5
Manes.05G055700 Manihot esculenta HOM05D004227 ORTHO05D005027 2.8e-74 282.0 149 91.3
Medtr3g118110 Medicago truncatula HOM05D004227 ORTHO05D005027 2.8e-74 282.0 148 90.5
TPR.G38529 Trifolium pratense HOM05D004227 ORTHO05D005027 2.8e-74 282.0 148 90.5
HPP92_014889 Vanilla planifolia HOM05D004227 ORTHO05D005027 2.8e-74 282.0 146 91.8
HPP92_014893 Vanilla planifolia HOM05D004227 ORTHO05D005027 2.8e-74 282.0 146 91.8
COL.COLO4_14773 Corchorus olitorius HOM05D004227 ORTHO05D005027 3.7e-74 281.6 148 91.2
unitig_46.g18760 Utricularia gibba HOM05D004227 ORTHO05D005027 3.7e-74 281.6 148 89.2
EL10Ac6g14165 Beta vulgaris HOM05D004227 ORTHO05D005027 4.8e-74 281.2 148 91.2
Glyma.03G109200 Glycine max HOM05D004227 ORTHO05D005027 4.8e-74 281.2 148 89.9
Psat5g001800 Pisum sativum HOM05D004227 ORTHO05D005027 4.8e-74 281.2 148 90.5
PGR004G2481 Punica granatum HOM05D004227 ORTHO05D005027 4.8e-74 281.2 148 89.9
Solyc03g093680.4 Solanum lycopersicum HOM05D004227 ORTHO05D005027 4.8e-74 281.2 147 90.5
Sopen03g024580 Solanum pennellii HOM05D004227 ORTHO05D005027 4.8e-74 281.2 147 90.5
HanXRQChr15g0493591 Helianthus annuus HOM05D004227 ORTHO05D005027 6.3e-74 280.8 144 91.7
Phvul.006G161800 Phaseolus vulgaris HOM05D004227 ORTHO05D005027 8.3e-74 280.4 148 89.9
VMungo0331G1366 Vigna mungo HOM05D004227 ORTHO05D005027 8.3e-74 280.4 148 89.9
Aqoxy3G01907 Aquilegia oxysepala HOM05D004227 ORTHO05D005027 1.1e-73 280.0 149 90.6
Lj3g0003497 Lotus japonicus HOM05D004227 ORTHO05D005027 1.1e-73 280.0 148 89.9
Lj3g0012613 Lotus japonicus HOM05D004227 ORTHO05D005027 1.1e-73 280.0 148 89.9
Phvul.010G046900 Phaseolus vulgaris HOM05D004227 ORTHO05D005027 1.1e-73 280.0 148 89.9
Glyma.15G097500 Glycine max HOM05D004227 ORTHO05D005027 1.4e-73 279.6 148 89.2
Lalb_Chr06g0171081 Lupinus albus HOM05D004227 ORTHO05D005027 1.4e-73 279.6 152 87.5
THA.LOC104816996 Tarenaya hassleriana HOM05D004227 ORTHO05D005027 1.4e-73 279.6 149 90.6
Aqoxy91s003 Aquilegia oxysepala HOM05D004227 ORTHO05D005027 2.4e-73 278.9 149 90.6
Cfa009863 Carpinus fangiana HOM05D004227 ORTHO05D005027 3.1e-73 278.5 154 87.0
FAN01G2506 Fragaria x ananassa HOM05D004227 ORTHO05D005027 3.1e-73 278.5 148 89.2
FAN03G2167 Fragaria x ananassa HOM05D004227 ORTHO05D005027 3.1e-73 278.5 148 89.2
FAN06G3355 Fragaria x ananassa HOM05D004227 ORTHO05D005027 3.1e-73 278.5 148 89.2
FAN10G0507 Fragaria x ananassa HOM05D004227 ORTHO05D005027 3.1e-73 278.5 148 89.2
FAN10G0749 Fragaria x ananassa HOM05D004227 ORTHO05D005027 3.1e-73 278.5 148 89.2
RcHm_v2.0_Chr1g0348061 Rosa chinensis HOM05D004227 ORTHO05D005027 3.1e-73 278.5 148 89.2
Prupe.2G133100 Prunus persica HOM05D004227 ORTHO05D005027 5.4e-73 277.7 148 89.2
FAN06G2246 Fragaria x ananassa HOM05D004227 ORTHO05D005027 7.0e-73 277.3 148 88.5
THA.LOC104801496 Tarenaya hassleriana HOM05D004227 ORTHO05D005027 7.0e-73 277.3 144 91.0
CAN.G460.2 Capsicum annuum HOM05D004227 ORTHO05D005027 9.1e-73 276.9 144 91.0
Eucgr.D01223 Eucalyptus grandis HOM05D004227 ORTHO05D005027 9.1e-73 276.9 148 88.5
MD07G1109700 Malus domestica HOM05D004227 ORTHO05D005027 9.1e-73 276.9 148 88.5
BcaC07g42337 Brassica carinata HOM05D004227 ORTHO05D005027 2.0e-72 275.8 149 88.6
QL04p029953 Quercus lobata HOM05D004227 ORTHO05D005027 2.7e-72 275.4 147 89.8
QL07p006029 Quercus lobata HOM05D004227 ORTHO05D005027 2.7e-72 275.4 147 89.8
AL1G10090 Arabidopsis lyrata HOM05D004227 ORTHO05D005027 3.5e-72 275.0 149 87.2
Os12g0287200 Oryza sativa ssp. japonica HOM05D004227 ORTHO05D005027 3.5e-72 275.0 144 89.6
BcaC07g42439 Brassica carinata HOM05D004227 ORTHO05D005027 7.7e-72 273.9 149 87.9
BolC8t52927H Brassica oleracea HOM05D004227 ORTHO05D005027 7.7e-72 273.9 149 87.9
Zm00001eb174310 Zea mays HOM05D004227 ORTHO05D005027 1.0e-71 273.5 144 89.6
A10p00100 Brassica napus HOM05D004227 ORTHO05D005027 1.7e-71 272.7 148 87.8
BraA10t42288Z Brassica rapa HOM05D004227 ORTHO05D005027 1.7e-71 272.7 148 87.8
Thhalv10009013m.g Eutrema salsugineum HOM05D004227 ORTHO05D005027 1.7e-71 272.7 149 86.6
AT1G02140 Arabidopsis thaliana HOM05D004227 ORTHO05D005027 2.2e-71 272.3 149 86.6
BcaB03g13634 Brassica carinata HOM05D004227 ORTHO05D005027 3.8e-71 271.6 148 87.2
C05p00070 Brassica napus HOM05D004227 ORTHO05D005027 3.8e-71 271.6 148 87.2
Carub.0001s0001 Capsella rubella HOM05D004227 ORTHO05D005027 2.5e-70 268.9 148 86.5
CiPaw.14G019900 Carya illinoinensis HOM05D004227 ORTHO05D005027 2.5e-70 268.9 144 89.6
Os08g0107900 Oryza sativa ssp. japonica HOM05D004227 ORTHO05D005027 4.2e-70 268.1 144 87.5
Rhsim13G0168500 Rhododendron simsii HOM05D004227 ORTHO05D005027 2.1e-69 265.8 140 90.0
CARHR000190 Cardamine hirsuta HOM05D004227 ORTHO05D005027 3.6e-69 265.0 148 85.1
BolC5t28794H Brassica oleracea HOM05D004227 ORTHO05D005027 6.1e-69 264.2 156 82.7
Zm00001eb260270 Zea mays HOM05D004227 ORTHO05D005027 4.0e-68 261.5 143 88.1
Lalb_Chr01g0012541 Lupinus albus HOM05D004227 ORTHO05D005027 4.4e-67 258.1 139 87.1
Sp1g00120 Schrenkiella parvula HOM05D004227 ORTHO05D005027 1.1e-65 253.4 139 86.3
MBI19_g27175_MAGBIO Magnolia biondii HOM05D004227 ORTHO05D005027 3.1e-65 251.9 129 92.2
Sc24g0004090 Simmondsia chinensis HOM05D004227 ORTHO05D005027 1.6e-64 249.6 145 82.1
vmacro05443 Vaccinium macrocarpon HOM05D004227 ORTHO05D005027 1.6e-64 249.6 125 92.8
Lj7A548G44 Lonicera japonica HOM05D004227 ORTHO05D005027 2.0e-64 249.2 134 88.8
ClCG05G000140 Citrullus lanatus HOM05D004227 ORTHO05D005027 2.7e-64 248.8 127 92.1
MELO3C005946.2 Cucumis melo HOM05D004227 ORTHO05D005027 2.7e-64 248.8 127 92.1
TAR629G1537 Trochodendron aralioides HOM05D004227 ORTHO05D005027 5.9e-64 247.7 128 90.6
Nitab4.5_0004457g0020 Nicotiana tabacum HOM05D004227 ORTHO05D005027 7.7e-64 247.3 129 90.7
BraA09t42281Z Brassica rapa HOM05D004227 ORTHO05D005027 1.0e-63 246.9 151 79.5
Oeu030870.1 Olea europaea HOM05D004227 ORTHO05D005027 1.0e-63 246.9 128 89.8
SalBow3G0312 Salvia bowleyana HOM05D004227 ORTHO05D005027 1.0e-63 246.9 127 90.6
PGSC0003DMG400021002 Solanum tuberosum HOM05D004227 ORTHO05D005027 1.0e-63 246.9 130 89.2
Aa31LG1G11540 Aethionema arabicum HOM05D004227 ORTHO05D005027 1.3e-63 246.5 129 90.7
A09p69360 Brassica napus HOM05D004227 ORTHO05D005027 1.3e-63 246.5 151 79.5
SalBow3G4020 Salvia bowleyana HOM05D004227 ORTHO05D005027 1.3e-63 246.5 125 91.2
Lj9A555T36 Lonicera japonica HOM05D004227 ORTHO05D005027 1.7e-63 246.1 128 89.1
Atru.chr2.217 Acer truncatum HOM05D004227 ORTHO05D005027 2.3e-63 245.7 132 88.6
AUR62039531 Chenopodium quinoa HOM05D004227 ORTHO05D005027 2.3e-63 245.7 137 86.9
unitig_37.g12485 Utricularia gibba HOM05D004227 ORTHO05D005027 2.9e-63 245.4 129 90.7
Peaxi162Scf01305g00032 Petunia axillaris HOM05D004227 ORTHO05D005027 8.6e-63 243.8 127 90.6
Aqoxy109s003 Aquilegia oxysepala HOM05D004227 ORTHO05D005027 1.1e-62 243.4 132 87.9
Oeu046442.1 Olea europaea HOM05D004227 ORTHO05D005027 1.1e-62 243.4 128 89.1
Peaxi162Scf00304g01023 Petunia axillaris HOM05D004227 ORTHO05D005027 1.1e-62 243.4 148 81.1
Sabra02G0107500 Salix brachista HOM05D004227 ORTHO05D005027 1.1e-62 243.4 135 85.9
Aqoxy3G01910 Aquilegia oxysepala HOM05D004227 ORTHO05D005027 1.9e-62 242.7 129 89.9
FvH4_7g10360 Fragaria vesca HOM05D004227 ORTHO05D005027 1.9e-62 242.7 142 81.7
MCO04G284 Micromonas commoda HOM05D004227 ORTHO05D005027 4.7e-61 238.0 146 73.3
Cre09.g392692 Chlamydomonas reinhardtii HOM05D004227 ORTHO05D005027 1.0e-60 236.9 143 73.4
SGA_v2.0_scaffold60G20835 Striga asiatica HOM05D004227 ORTHO05D005027 3.0e-60 235.3 140 81.4
ATR0090G010 Amborella trichopoda HOM05D004227 ORTHO05D005027 2.7e-56 222.2 150 74.7
Pp3c1_16390 Physcomitrium patens HOM05D004227 ORTHO05D005027 7.8e-56 220.7 145 78.6
Medtr3g109260 Medicago truncatula HOM05D004227 ORTHO05D005027 2.3e-55 219.2 147 69.4
Haze_23235 Corylus avellana HOM05D004227 ORTHO05D005027 2.5e-54 215.7 190 60.5
CiPaw.13G025400 Carya illinoinensis HOM05D004227 ORTHO05D005027 8.9e-52 207.2 116 86.2
SHI13620 Sapria himalayana HOM05D004227 ORTHO05D005027 7.0e-49 197.6 128 75.8
GSVIVG01013876001 Vitis vinifera HOM05D004227 ORTHO05D005027 1.0e-47 193.7 103 90.3
Lsat_1_v5_gn_2_127120 Lactuca sativa HOM05D004227 ORTHO05D005027 1.7e-47 193.0 103 88.3
Cc02_g04830 Coffea canephora HOM05D004227 ORTHO05D005027 8.6e-47 190.7 103 87.4
Haze_27249 Corylus avellana HOM05D004227 ORTHO05D005027 5.6e-46 188.0 114 74.6
CDE06G1723 Ceratophyllum demersum HOM05D004227 ORTHO05D005027 1.4e-41 173.3 87 92.0
C08p54180 Brassica napus HOM05D004227 ORTHO05D005027 1.0e-39 167.2 115 76.5
CBR_g19771 Chara braunii HOM05D004227 ORTHO05D005027 1.1e-38 163.7 81 97.5
Atru.chr5.117 Acer truncatum HOM05D004227 ORTHO05D005027 3.1e-36 155.6 79 89.9
VMungo0540G1169 Vigna mungo HOM05D004227 ORTHO05D005027 7.6e-35 151.0 83 81.9
HPP92_020677 Vanilla planifolia HOM05D004227 ORTHO05D005027 1.4e-33 146.7 128 61.7
Rhsim13G0168700 Rhododendron simsii HOM05D004227 ORTHO05D005027 5.4e-33 144.8 73 94.5
MD00G1129300 Malus domestica HOM05D004227 ORTHO05D005027 6.8e-28 127.9 70 81.4
Aqoxy3G01908 Aquilegia oxysepala HOM05D004227 ORTHO05D005027 3.4e-27 125.6 71 85.9
Aqoxy91s002 Aquilegia oxysepala HOM05D004227 ORTHO05D005027 2.9e-26 122.5 71 84.5
Actinidia01038 Actinidia chinensis HOM05D004227 ORTHO05D005027 8.4e-26 120.9 83 69.9
Aqoxy3G01911 Aquilegia oxysepala HOM05D002706 ORTHO05D003253 1.4e-25 120.2 71 83.1
Sed0011381 Sechium edule HOM05D004227 ORTHO05D373379 7.9e-16 87.8 45 93.3
Aqoxy109s002 Aquilegia oxysepala HOM05D002706 ORTHO05D003253 8.7e-15 84.3 46 84.8
Haze_23858 Corylus avellana HOM05D004227 ORTHO05D034883 1.1e-12 77.4 45 77.8


User provided reference genes

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