Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c2_19740 Physcomitrium patens HOM05D002724 ORTHO05D002995 3.0e-70 268.5 140 100.0
Pp3c2_19730 Physcomitrium patens HOM05D002724 ORTHO05D002995 6.9e-43 177.6 136 75.0
Pp3c10_2610 Physcomitrium patens HOM05D002724 ORTHO05D002995 2.6e-34 149.1 91 80.2
Mapoly0104s0033 Marchantia polymorpha HOM05D002724 ORTHO05D002995 1.5e-18 96.7 99 51.5
Mapoly0104s0034 Marchantia polymorpha HOM05D002724 ORTHO05D002995 1.5e-18 96.7 99 51.5
AagrBONN_evm.TU.Sc2ySwM_117.1625 Anthoceros agrestis HOM05D002724 ORTHO05D002995 1.4e-16 90.1 105 46.7
ECA236G0664 Erigeron canadensis HOM05D002724 ORTHO05D002995 3.2e-16 89.0 103 41.7
Sed0008019 Sechium edule HOM05D002724 ORTHO05D002995 4.2e-16 88.6 104 43.3
VMungo0251G0637 Vigna mungo HOM05D002724 ORTHO05D002995 9.3e-16 87.4 104 42.3
Glyma.07G195900 Glycine max HOM05D002724 ORTHO05D002995 1.6e-15 86.7 104 42.3
Lj8A156G76 Lonicera japonica HOM05D002724 ORTHO05D002995 1.6e-15 86.7 104 42.3
TAR629G0183 Trochodendron aralioides HOM05D002724 ORTHO05D002995 1.6e-15 86.7 104 45.2
arahy.Tifrunner.gnm1.ann1.9ZT65R Arachis hypogaea HOM05D002724 ORTHO05D002995 2.1e-15 86.3 104 42.3
arahy.Tifrunner.gnm1.ann1.JB3DWX Arachis hypogaea HOM05D002724 ORTHO05D002995 2.1e-15 86.3 104 42.3
Cfa000464 Carpinus fangiana HOM05D002724 ORTHO05D002995 3.5e-15 85.5 104 44.2
Glyma.13G180100 Glycine max HOM05D002724 ORTHO05D002995 3.5e-15 85.5 104 41.3
HanXRQChr15g0494651 Helianthus annuus HOM05D002724 ORTHO05D002995 3.5e-15 85.5 103 42.7
Manes.16G027900 Manihot esculenta HOM05D002724 ORTHO05D002995 4.6e-15 85.1 104 42.3
Potri.011G052800 Populus trichocarpa HOM05D002724 ORTHO05D002995 4.6e-15 85.1 104 42.3
SEGI_12329 Sequoiadendron giganteum HOM05D002724 ORTHO05D002995 4.6e-15 85.1 104 42.3
THA.LOC104812936 Tarenaya hassleriana HOM05D002724 ORTHO05D002995 4.6e-15 85.1 104 41.3
MELO3C025549.2 Cucumis melo HOM05D002724 ORTHO05D002995 6.0e-15 84.7 104 41.3
DCAR_019550 Daucus carota HOM05D002724 ORTHO05D002995 6.0e-15 84.7 103 42.7
Duzib192G0701 Durio zibethinus HOM05D002724 ORTHO05D002995 6.0e-15 84.7 104 41.3
Phvul.002G228500 Phaseolus vulgaris HOM05D002724 ORTHO05D002995 7.9e-15 84.3 104 42.3
THA.LOC104806293 Tarenaya hassleriana HOM05D002724 ORTHO05D002995 7.9e-15 84.3 104 41.3
CANSAT35G0352 Cannabis sativa HOM05D002724 ORTHO05D002995 1.0e-14 84.0 104 43.3
C03p36480 Brassica napus HOM05D002724 ORTHO05D002995 1.8e-14 83.2 104 43.3
BolC9t56131H Brassica oleracea HOM05D002724 ORTHO05D002995 2.3e-14 82.8 104 42.3
Lalb_Chr05g0218441 Lupinus albus HOM05D002724 ORTHO05D002995 2.3e-14 82.8 104 41.3
PSO832G3329 Papaver somniferum HOM05D002724 ORTHO05D002995 2.3e-14 82.8 104 41.3
Thecc.06G187300 Theobroma cacao HOM05D002724 ORTHO05D002995 2.3e-14 82.8 104 42.3
TWI38G0591 Tripterygium wilfordii HOM05D002724 ORTHO05D002995 2.3e-14 82.8 104 41.3
Cc05_g12070 Coffea canephora HOM05D002724 ORTHO05D002995 3.0e-14 82.4 104 41.3
Sc03g0009950 Simmondsia chinensis HOM05D002724 ORTHO05D002995 3.0e-14 82.4 104 43.3
Aa31LG9G9580 Aethionema arabicum HOM05D002724 ORTHO05D002995 3.9e-14 82.0 104 42.3
AL6G48420 Arabidopsis lyrata HOM05D002724 ORTHO05D002995 3.9e-14 82.0 104 43.3
CSS0016915 Camellia sinensis var. sinensis HOM05D002724 ORTHO05D002995 3.9e-14 82.0 104 40.4
Manes.17G045800 Manihot esculenta HOM05D002724 ORTHO05D002995 3.9e-14 82.0 104 41.3
Prupe.4G047600 Prunus persica HOM05D002724 ORTHO05D002995 3.9e-14 82.0 104 42.3
Sp6g04050 Schrenkiella parvula HOM05D002724 ORTHO05D002995 3.9e-14 82.0 104 42.3
SpUn0051_0030 Schrenkiella parvula HOM05D002724 ORTHO05D002995 3.9e-14 82.0 104 42.3
BcaC04g21344 Brassica carinata HOM05D002724 ORTHO05D002995 5.1e-14 81.6 104 42.3
A09p26000 Brassica napus HOM05D002724 ORTHO05D002995 5.1e-14 81.6 104 42.3
C09p32960 Brassica napus HOM05D002724 ORTHO05D002995 5.1e-14 81.6 104 42.3
BolC3t15961H Brassica oleracea HOM05D002724 ORTHO05D002995 5.1e-14 81.6 104 42.3
BraA09t38166Z Brassica rapa HOM05D002724 ORTHO05D002995 5.1e-14 81.6 104 42.3
CsaV3_1G017090 Cucumis sativus L. HOM05D002724 ORTHO05D002995 5.1e-14 81.6 104 39.4
Nn1g04091 Nelumbo nucifera HOM05D002724 ORTHO05D002995 5.1e-14 81.6 104 41.3
COL.COLO4_31469 Corchorus olitorius HOM05D002724 ORTHO05D002995 6.7e-14 81.3 104 42.3
MD05G1312500 Malus domestica HOM05D002724 ORTHO05D002995 6.7e-14 81.3 105 41.9
QL05p060587 Quercus lobata HOM05D002724 ORTHO05D002995 6.7e-14 81.3 104 41.3
AT4G04910 Arabidopsis thaliana HOM05D002724 ORTHO05D002995 8.7e-14 80.9 104 43.3
Carub.0006s3283 Capsella rubella HOM05D002724 ORTHO05D002995 8.7e-14 80.9 104 42.3
CARHR252620 Cardamine hirsuta HOM05D002724 ORTHO05D002995 8.7e-14 80.9 104 41.3
Thhalv10028462m.g Eutrema salsugineum HOM05D002724 ORTHO05D002995 8.7e-14 80.9 104 42.3
Lsat_1_v5_gn_7_105121 Lactuca sativa HOM05D002724 ORTHO05D002995 8.7e-14 80.9 103 37.9
Lalb_Chr09g0327631 Lupinus albus HOM05D002724 ORTHO05D002995 8.7e-14 80.9 104 40.4
Medtr4g088885 Medicago truncatula HOM05D002724 ORTHO05D002995 8.7e-14 80.9 105 42.9
PSO210G5715 Papaver somniferum HOM05D002724 ORTHO05D002995 8.7e-14 80.9 104 40.4
Potri.004G043900 Populus trichocarpa HOM05D002724 ORTHO05D002995 8.7e-14 80.9 104 39.4
RcHm_v2.0_Chr5g0008441 Rosa chinensis HOM05D002724 ORTHO05D002995 8.7e-14 80.9 103 40.8
Sc16g0006970 Simmondsia chinensis HOM05D002724 ORTHO05D002995 8.7e-14 80.9 104 41.3
BcaB05g23705 Brassica carinata HOM05D002724 ORTHO05D002995 1.1e-13 80.5 104 41.3
Migut.H01936 Erythranthe guttata HOM05D002724 ORTHO05D002995 1.1e-13 80.5 104 37.5
MD10G1294300 Malus domestica HOM05D002724 ORTHO05D002995 1.1e-13 80.5 105 41.9
AL7G31640 Arabidopsis lyrata HOM05D002724 ORTHO05D002995 1.5e-13 80.1 104 39.4
GSVIVG01014341001 Vitis vinifera HOM05D002724 ORTHO05D002995 1.5e-13 80.1 104 39.4
Actinidia09684 Actinidia chinensis HOM05D002724 ORTHO05D002995 1.9e-13 79.7 104 40.4
Gorai.010G153600 Gossypium raimondii HOM05D002724 ORTHO05D002995 1.9e-13 79.7 104 39.4
PGR004G1438 Punica granatum HOM05D002724 ORTHO05D002995 1.9e-13 79.7 103 36.9
TAR627G0194 Trochodendron aralioides HOM05D002724 ORTHO05D002995 1.9e-13 79.7 104 41.3
Haze_06453 Corylus avellana HOM05D002724 ORTHO05D002995 2.5e-13 79.3 107 40.2
SMO122G0002 Selaginella moellendorffii HOM05D002724 ORTHO05D002995 2.5e-13 79.3 93 43.0
QL05p060484 Quercus lobata HOM05D002724 ORTHO05D002995 3.3e-13 79.0 104 41.3
RcHm_v2.0_Chr5g0005941 Rosa chinensis HOM05D002724 ORTHO05D002995 3.3e-13 79.0 103 39.8
vmacro11862 Vaccinium macrocarpon HOM05D002724 ORTHO05D002995 3.3e-13 79.0 104 39.4
Cpa.g.sc27.27 Carica papaya HOM05D002724 ORTHO05D002995 4.3e-13 78.6 104 43.3
Ciclev10011146m.g Citrus clementina HOM05D002724 ORTHO05D002995 4.3e-13 78.6 92 42.4
SMO351G0294 Selaginella moellendorffii HOM05D002724 ORTHO05D002995 4.3e-13 78.6 92 43.5
Atru.chr12.2148 Acer truncatum HOM05D002724 ORTHO05D002995 5.7e-13 78.2 104 40.4
AL7G50070 Arabidopsis lyrata HOM05D002724 ORTHO05D002995 5.7e-13 78.2 94 40.4
Gohir.A06G126900 Gossypium hirsutum HOM05D002724 ORTHO05D002995 5.7e-13 78.2 104 38.5
Gohir.A06G210200 Gossypium hirsutum HOM05D002724 ORTHO05D002995 5.7e-13 78.2 104 40.4
Gohir.D06G210800 Gossypium hirsutum HOM05D002724 ORTHO05D002995 5.7e-13 78.2 104 40.4
Gorai.010G255500 Gossypium raimondii HOM05D002724 ORTHO05D002995 5.7e-13 78.2 104 40.4
Hma1.2p1_0885F.1_g232610 Hydrangea macrophylla HOM05D002724 ORTHO05D002995 5.7e-13 78.2 104 37.5
A03p30230 Brassica napus HOM05D002724 ORTHO05D002995 7.4e-13 77.8 103 42.7
BraA03t12207Z Brassica rapa HOM05D002724 ORTHO05D002995 7.4e-13 77.8 103 42.7
CiPaw.13G137300 Carya illinoinensis HOM05D002724 ORTHO05D002995 7.4e-13 77.8 104 40.4
Gohir.D06G131800 Gossypium hirsutum HOM05D002724 ORTHO05D002995 7.4e-13 77.8 104 39.4
EL10Ac4g08172 Beta vulgaris HOM05D002724 ORTHO05D002995 9.6e-13 77.4 107 41.1
FvH4_3g09180 Fragaria vesca HOM05D002724 ORTHO05D002995 9.6e-13 77.4 103 40.8
FAN11G1358 Fragaria x ananassa HOM05D002724 ORTHO05D002995 9.6e-13 77.4 103 40.8
Lj4g0025106 Lotus japonicus HOM05D002724 ORTHO05D002995 9.6e-13 77.4 105 40.0
Nitab4.5_0000207g0120 Nicotiana tabacum HOM05D002724 ORTHO05D002995 9.6e-13 77.4 103 37.9
vmacro09533 Vaccinium macrocarpon HOM05D002724 ORTHO05D002995 9.6e-13 77.4 104 37.5
CAN.G199.6 Capsicum annuum HOM05D002724 ORTHO05D002995 1.3e-12 77.0 103 37.9
Eucgr.E03294 Eucalyptus grandis HOM05D002724 ORTHO05D002995 1.3e-12 77.0 104 41.3
CDE08G0699 Ceratophyllum demersum HOM05D002724 ORTHO05D002995 1.6e-12 76.6 103 40.8
FvH4_4g01371 Fragaria vesca HOM05D002724 ORTHO05D002995 1.6e-12 76.6 103 40.8
AL7G32210 Arabidopsis lyrata HOM05D002724 ORTHO05D002995 2.1e-12 76.3 105 39.0
Duzib160G0569 Durio zibethinus HOM05D002724 ORTHO05D002995 2.1e-12 76.3 104 38.5
FAN16G0141 Fragaria x ananassa HOM05D002724 ORTHO05D002995 2.8e-12 75.9 91 41.8
FAN21G2993 Fragaria x ananassa HOM05D002724 ORTHO05D002995 2.8e-12 75.9 103 39.8
FAN25G1567 Fragaria x ananassa HOM05D002724 ORTHO05D002995 2.8e-12 75.9 103 39.8
Sp1g30090 Schrenkiella parvula HOM05D002724 ORTHO05D002995 2.8e-12 75.9 104 38.5
Eucgr.E03298 Eucalyptus grandis HOM05D002724 ORTHO05D002995 3.7e-12 75.5 104 38.5
SGA_v2.0_scaffold158G37495 Striga asiatica HOM05D002724 ORTHO05D002995 3.7e-12 75.5 104 38.5
Aqoxy7G02579 Aquilegia oxysepala HOM05D002724 ORTHO05D002995 4.8e-12 75.1 104 37.5
FvH4_4g01320 Fragaria vesca HOM05D002724 ORTHO05D002995 4.8e-12 75.1 99 39.4
Psat7g113520 Pisum sativum HOM05D002724 ORTHO05D002995 4.8e-12 75.1 105 37.1
SalBow7G4564 Salvia bowleyana HOM05D002724 ORTHO05D002995 4.8e-12 75.1 91 40.7
Sp7g19890 Schrenkiella parvula HOM05D002724 ORTHO05D002995 4.8e-12 75.1 104 36.5
Hund02192 Selenicereus undatus HOM05D002724 ORTHO05D002995 4.8e-12 75.1 104 39.4
MBI07_g30175_MAGBIO Magnolia biondii HOM05D002724 ORTHO05D002995 6.3e-12 74.7 103 40.8
SGA_v2.0_scaffold46G17492 Striga asiatica HOM05D002724 ORTHO05D002995 6.3e-12 74.7 104 37.5
PGSC0003DMG402029739 Solanum tuberosum HOM05D002724 ORTHO05D002995 1.1e-11 73.9 103 36.9
Ca_18540_v3 Cicer arietinum L. HOM05D002724 ORTHO05D002995 1.4e-11 73.6 101 38.6
QL05p060533 Quercus lobata HOM05D002724 ORTHO05D002995 1.4e-11 73.6 104 39.4
unitig_747.g22010 Utricularia gibba HOM05D002724 ORTHO05D002995 1.4e-11 73.6 104 37.5
CARHR228460 Cardamine hirsuta HOM05D002724 ORTHO05D002995 1.8e-11 73.2 105 39.0
Solyc01g104920.3 Solanum lycopersicum HOM05D002724 ORTHO05D002995 1.8e-11 73.2 103 35.9
DCAR_013103 Daucus carota HOM05D002724 ORTHO05D002995 2.4e-11 72.8 104 37.5
ATR0737G106 Amborella trichopoda HOM05D002724 ORTHO05D002995 3.1e-11 72.4 104 38.5
A01p21430 Brassica napus HOM05D002724 ORTHO05D002995 4.1e-11 72.0 93 39.8
BraA01t02048Z Brassica rapa HOM05D002724 ORTHO05D002995 4.1e-11 72.0 93 39.8
CSS0027753 Camellia sinensis var. sinensis HOM05D002724 ORTHO05D002995 6.9e-11 71.2 104 36.5
Oeu011340.2 Olea europaea HOM05D002724 ORTHO05D002995 6.9e-11 71.2 104 36.5
BcaC09g50311 Brassica carinata HOM05D002724 ORTHO05D002995 9.0e-11 70.9 94 40.4
BolC1t02617H Brassica oleracea HOM05D002724 ORTHO05D002995 9.0e-11 70.9 94 40.4
Sabra11G0036700 Salix brachista HOM05D002724 ORTHO05D002995 9.0e-11 70.9 90 45.6
Peaxi162Scf00027g00235 Petunia axillaris HOM05D002724 ORTHO05D002995 2.0e-10 69.7 104 35.6
Actinidia12809 Actinidia chinensis HOM05D002724 ORTHO05D002995 2.6e-10 69.3 105 37.1
PRCOL_00004338 Prasinoderma coloniale HOM05D002724 ORTHO05D002995 2.6e-10 69.3 92 42.4
Rhsim06G0198500 Rhododendron simsii HOM05D002724 ORTHO05D002995 2.6e-10 69.3 104 35.6
AUR62004451 Chenopodium quinoa HOM05D002724 ORTHO05D002995 3.4e-10 68.9 122 34.4
Sopen01g047460 Solanum pennellii HOM05D002724 ORTHO05D002995 3.4e-10 68.9 103 35.0
Zm00001eb185960 Zea mays HOM05D002724 ORTHO05D002995 4.5e-10 68.6 105 36.2
Zm00001eb293810 Zea mays HOM05D002724 ORTHO05D002995 4.5e-10 68.6 105 36.2
AUR62034292 Chenopodium quinoa HOM05D002724 ORTHO05D002995 5.9e-10 68.2 112 37.5
Sabra04G0027100 Salix brachista HOM05D002724 ORTHO05D002995 5.9e-10 68.2 88 39.8
HanXRQChr11g0328421 Helianthus annuus HOM05D002724 ORTHO05D002995 3.8e-09 65.5 86 39.5
Os05g0519400 Oryza sativa ssp. japonica HOM05D002724 ORTHO05D002995 3.8e-09 65.5 105 35.2
Lj1A843G46 Lonicera japonica HOM05D002724 ORTHO05D002995 1.4e-08 63.5 104 37.5
Rhsim04G0021300 Rhododendron simsii HOM05D002724 ORTHO05D002995 1.4e-08 63.5 128 31.2
Ah.06g184140 Amaranthus hybridus HOM05D002724 ORTHO05D002995 2.5e-08 62.8 103 35.9
FAN13G1355 Fragaria x ananassa HOM05D002724 ORTHO05D002995 2.5e-08 62.8 104 35.6
CsaV3_UNG045320 Cucumis sativus L. HOM05D002724 ORTHO05D002995 4.2e-08 62.0 112 33.0
SMO118G0057 Selaginella moellendorffii HOM05D002724 ORTHO05D002995 7.2e-08 61.2 91 36.3
MCO11G655 Micromonas commoda HOM05D002724 ORTHO05D002995 6.1e-07 58.2 85 38.8
HPP92_011523 Vanilla planifolia HOM05D002724 ORTHO05D002995 6.1e-07 58.2 72 40.3
C01p26760 Brassica napus HOM05D002724 ORTHO05D002995 1.0e-06 57.4 118 32.2
MSTRG.12912 Avicennia marina HOM05D002724 ORTHO05D002995 2.3e-06 56.2 82 36.6
Nitab4.5_0002383g0080 Nicotiana tabacum HOM05D002724 ORTHO05D002995 8.7e-06 54.3 103 32.0


User provided reference genes

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