Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c2_19610 Physcomitrium patens HOM05D004653 ORTHO05D006221 0.0e+00 1162.1 572 100.0
Mapoly0107s0030 Marchantia polymorpha HOM05D004653 ORTHO05D006221 1.1e-190 670.6 511 65.4
TAR376G1013 Trochodendron aralioides HOM05D004653 ORTHO05D006221 3.1e-182 642.5 466 64.4
ATR0022G001 Amborella trichopoda HOM05D004653 ORTHO05D006221 5.2e-182 641.7 480 64.2
COL.COLO4_11961 Corchorus olitorius HOM05D004653 ORTHO05D006221 1.5e-181 640.2 489 62.0
ClCG11G014410 Citrullus lanatus HOM05D004653 ORTHO05D006221 2.6e-181 639.4 464 63.4
Thecc.08G066400 Theobroma cacao HOM05D004653 ORTHO05D006221 4.4e-181 638.6 473 63.0
MELO3C003541.2 Cucumis melo HOM05D004653 ORTHO05D006221 9.9e-181 637.5 490 61.6
TWI56G0982 Tripterygium wilfordii HOM05D004653 ORTHO05D006221 2.9e-180 636.0 484 62.2
CsaV3_3G047810 Cucumis sativus L. HOM05D004653 ORTHO05D006221 6.4e-180 634.8 466 63.7
CSS0037453 Camellia sinensis var. sinensis HOM05D004653 ORTHO05D006221 8.4e-180 634.4 466 63.1
Lj1g0013887 Lotus japonicus HOM05D004653 ORTHO05D006221 8.4e-180 634.4 466 63.3
CiPaw.07G169200 Carya illinoinensis HOM05D004653 ORTHO05D006221 2.4e-179 632.9 474 63.1
Lj4C92G16 Lonicera japonica HOM05D004653 ORTHO05D006221 2.4e-179 632.9 464 64.0
AUR62027845 Chenopodium quinoa HOM05D004653 ORTHO05D006221 3.2e-179 632.5 473 63.2
Solyc03g113780.3 Solanum lycopersicum HOM05D004653 ORTHO05D006221 9.2e-179 630.9 466 63.3
Sed0021217 Sechium edule HOM05D004653 ORTHO05D006221 1.2e-178 630.6 489 61.1
Ciclev10000790m.g Citrus clementina HOM05D004653 ORTHO05D006221 1.6e-178 630.2 470 62.8
MD15G1380600 Malus domestica HOM05D004653 ORTHO05D006221 2.1e-178 629.8 467 63.8
MD08G1191800 Malus domestica HOM05D004653 ORTHO05D006221 2.7e-178 629.4 473 63.4
Prupe.1G526800 Prunus persica HOM05D004653 ORTHO05D006221 2.7e-178 629.4 471 63.3
GSVIVG01009125001 Vitis vinifera HOM05D004653 ORTHO05D006221 2.7e-178 629.4 489 60.5
Sopen03g032830 Solanum pennellii HOM05D004653 ORTHO05D006221 3.5e-178 629.0 480 61.9
Migut.I00061 Erythranthe guttata HOM05D004653 ORTHO05D006221 4.6e-178 628.6 513 60.0
Atru.chr13.1058 Acer truncatum HOM05D004653 ORTHO05D006221 7.8e-178 627.9 466 62.9
VMungo1309G1466 Vigna mungo HOM05D004653 ORTHO05D006221 1.0e-177 627.5 466 63.7
Actinidia30803 Actinidia chinensis HOM05D004653 ORTHO05D006221 2.3e-177 626.3 498 59.6
arahy.Tifrunner.gnm1.ann1.QAT0QL Arachis hypogaea HOM05D004653 ORTHO05D006221 2.3e-177 626.3 525 57.7
AT5G49970 Arabidopsis thaliana HOM05D004653 ORTHO05D006221 3.0e-177 625.9 462 64.1
AUR62019003 Chenopodium quinoa HOM05D004653 ORTHO05D006221 3.0e-177 625.9 473 62.8
MSTRG.23086 Avicennia marina HOM05D004653 ORTHO05D006221 5.1e-177 625.2 482 62.4
Nn1g05497 Nelumbo nucifera HOM05D004653 ORTHO05D006221 5.1e-177 625.2 466 61.8
RcHm_v2.0_Chr7g0237681 Rosa chinensis HOM05D004653 ORTHO05D006221 5.1e-177 625.2 477 62.7
SGA_v2.0_scaffold25G10868 Striga asiatica HOM05D004653 ORTHO05D006221 6.6e-177 624.8 482 62.9
Hma1.2p1_0961F.1_g241730 Hydrangea macrophylla HOM05D004653 ORTHO05D006221 8.7e-177 624.4 464 62.9
Carub.0008s0987 Capsella rubella HOM05D004653 ORTHO05D006221 1.1e-176 624.0 462 64.3
PGSC0003DMG401024581 Solanum tuberosum HOM05D004653 ORTHO05D006221 1.1e-176 624.0 480 61.2
Cfa013708 Carpinus fangiana HOM05D004653 ORTHO05D006221 1.5e-176 623.6 464 62.5
Gorai.009G279800 Gossypium raimondii HOM05D004653 ORTHO05D006221 1.5e-176 623.6 493 60.0
Cpa.g.sc36.204 Carica papaya HOM05D004653 ORTHO05D006221 1.9e-176 623.2 461 64.0
FAN18G1441 Fragaria x ananassa HOM05D004653 ORTHO05D006221 2.5e-176 622.9 470 63.0
Phvul.009G037700 Phaseolus vulgaris HOM05D004653 ORTHO05D006221 2.5e-176 622.9 464 63.1
Potri.002G102600 Populus trichocarpa HOM05D004653 ORTHO05D006221 2.5e-176 622.9 466 62.2
FvH4_5g35940 Fragaria vesca HOM05D004653 ORTHO05D006221 3.3e-176 622.5 473 62.8
SMO356G0546 Selaginella moellendorffii HOM05D004653 ORTHO05D006221 3.3e-176 622.5 445 67.6
CANSAT11G2183 Cannabis sativa HOM05D004653 ORTHO05D006221 4.3e-176 622.1 466 62.7
FAN04G0673 Fragaria x ananassa HOM05D004653 ORTHO05D006221 4.3e-176 622.1 473 62.6
CAN.G853.18 Capsicum annuum HOM05D004653 ORTHO05D006221 5.6e-176 621.7 473 61.9
SalBow5G1317 Salvia bowleyana HOM05D004653 ORTHO05D006221 7.3e-176 621.3 521 58.7
AL8G23940 Arabidopsis lyrata HOM05D004653 ORTHO05D006221 9.6e-176 620.9 462 63.4
QL09p016947 Quercus lobata HOM05D004653 ORTHO05D006221 9.6e-176 620.9 489 59.9
CSS0025013 Camellia sinensis var. sinensis HOM05D004653 ORTHO05D006221 3.6e-175 619.0 464 62.1
Gohir.D05G267700 Gossypium hirsutum HOM05D004653 ORTHO05D006221 3.6e-175 619.0 493 59.6
Hund26999 Selenicereus undatus HOM05D004653 ORTHO05D006221 4.7e-175 618.6 484 61.2
A03p27590 Brassica napus HOM05D004653 ORTHO05D006221 6.2e-175 618.2 463 63.3
FAN08G1395 Fragaria x ananassa HOM05D004653 ORTHO05D006221 6.2e-175 618.2 473 62.4
Lalb_Chr11g0065151 Lupinus albus HOM05D004653 ORTHO05D006221 1.1e-174 617.5 466 62.4
Manes.18G062000 Manihot esculenta HOM05D004653 ORTHO05D006221 1.1e-174 617.5 515 57.7
THA.LOC104799811 Tarenaya hassleriana HOM05D004653 ORTHO05D006221 1.1e-174 617.5 466 62.0
Ciclev10001057m.g Citrus clementina HOM05D004653 ORTHO05D006221 1.4e-174 617.1 470 61.5
BcaC01g04840 Brassica carinata HOM05D004653 ORTHO05D006221 1.8e-174 616.7 463 63.1
BraA03t11972Z Brassica rapa HOM05D004653 ORTHO05D006221 4.0e-174 615.5 463 63.1
CARHR258740 Cardamine hirsuta HOM05D004653 ORTHO05D006221 4.0e-174 615.5 462 63.4
Eucgr.F02123 Eucalyptus grandis HOM05D004653 ORTHO05D006221 4.0e-174 615.5 488 60.2
Lalb_Chr23g0270281 Lupinus albus HOM05D004653 ORTHO05D006221 4.0e-174 615.5 464 61.6
MBI06_g18790_MAGBIO Magnolia biondii HOM05D004653 ORTHO05D006221 4.0e-174 615.5 507 58.6
PSO541G1602 Papaver somniferum HOM05D004653 ORTHO05D006221 5.3e-174 615.1 512 58.2
PSO675G8871 Papaver somniferum HOM05D004653 ORTHO05D006221 5.3e-174 615.1 512 58.2
Os10g0377800 Oryza sativa ssp. japonica HOM05D004653 ORTHO05D006221 9.0e-174 614.4 496 59.9
BolC3t15652H Brassica oleracea HOM05D004653 ORTHO05D006221 1.5e-173 613.6 463 63.1
Thhalv10013217m.g Eutrema salsugineum HOM05D004653 ORTHO05D006221 1.5e-173 613.6 495 60.2
Sp6g11760 Schrenkiella parvula HOM05D004653 ORTHO05D006221 1.5e-173 613.6 496 60.3
C03p33300 Brassica napus HOM05D004653 ORTHO05D006221 2.6e-173 612.8 463 63.1
Psat5g045400 Pisum sativum HOM05D004653 ORTHO05D006221 3.4e-173 612.5 466 60.7
Manes.02G147500 Manihot esculenta HOM05D004653 ORTHO05D006221 4.4e-173 612.1 464 61.2
DCAR_012873 Daucus carota HOM05D004653 ORTHO05D006221 9.9e-173 610.9 500 58.8
Medtr3g100890 Medicago truncatula HOM05D004653 ORTHO05D006221 1.7e-172 610.1 468 60.3
PGR031G0949 Punica granatum HOM05D004653 ORTHO05D006221 1.7e-172 610.1 465 61.7
TPR.G26053 Trifolium pratense HOM05D004653 ORTHO05D006221 2.2e-172 609.8 468 60.9
BcaB01g02929 Brassica carinata HOM05D004653 ORTHO05D006221 4.9e-172 608.6 463 62.4
CDE05G0914 Ceratophyllum demersum HOM05D004653 ORTHO05D006221 4.9e-172 608.6 464 63.1
HanXRQChr02g0047071 Helianthus annuus HOM05D004653 ORTHO05D006221 8.4e-172 607.8 481 60.5
TAR628G1442 Trochodendron aralioides HOM05D004653 ORTHO05D006221 5.4e-171 605.1 466 60.5
HPP92_004087 Vanilla planifolia HOM05D004653 ORTHO05D006221 7.1e-171 604.7 467 62.1
HPP92_004102 Vanilla planifolia HOM05D004653 ORTHO05D006221 1.3e-169 600.5 467 61.9
Ca_15984_v3 Cicer arietinum L. HOM05D004653 ORTHO05D006221 3.0e-169 599.4 466 60.3
ECA247G2604 Erigeron canadensis HOM05D004653 ORTHO05D006221 1.5e-168 597.0 466 60.9
TWI36G0595 Tripterygium wilfordii HOM05D004653 ORTHO05D006221 7.3e-168 594.7 466 61.2
EL10Ac1g01097 Beta vulgaris HOM05D004653 ORTHO05D006221 2.8e-167 592.8 441 62.8
Lsat_1_v5_gn_1_2401 Lactuca sativa HOM05D004653 ORTHO05D006221 4.8e-167 592.0 463 60.7
arahy.Tifrunner.gnm1.ann1.Y1WP0G Arachis hypogaea HOM05D004653 ORTHO05D006221 6.2e-167 591.7 492 57.5
Rhsim06G0074900 Rhododendron simsii HOM05D004653 ORTHO05D006221 2.4e-166 589.7 480 59.0
Aa31sc34G110 Aethionema arabicum HOM05D004653 ORTHO05D006221 3.1e-166 589.3 529 56.3
Aqoxy6G01474 Aquilegia oxysepala HOM05D004653 ORTHO05D006221 4.0e-166 589.0 545 54.7
Haze_22352 Corylus avellana HOM05D004653 ORTHO05D006221 9.0e-166 587.8 558 52.5
Cc04_g13590 Coffea canephora HOM05D004653 ORTHO05D006221 1.2e-165 587.4 439 62.2
FAN13G0646 Fragaria x ananassa HOM05D004653 ORTHO05D006221 3.4e-165 585.9 452 62.2
Sabra02G0080400 Salix brachista HOM05D004653 ORTHO05D006221 3.4e-165 585.9 565 51.3
unitig_26.g9628 Utricularia gibba HOM05D004653 ORTHO05D006221 1.2e-162 577.4 462 60.0
Gohir.A05G265600 Gossypium hirsutum HOM05D004653 ORTHO05D006221 4.6e-162 575.5 493 56.6
vmacro22331 Vaccinium macrocarpon HOM05D004653 ORTHO05D006221 9.6e-160 567.8 602 48.5
AagrBONN_evm.TU.Sc2ySwM_368.1227 Anthoceros agrestis HOM05D004653 ORTHO05D006221 1.6e-159 567.0 496 58.1
Sc01g0000970 Simmondsia chinensis HOM05D004653 ORTHO05D006221 1.1e-158 564.3 424 62.0
Sc01g0000980 Simmondsia chinensis HOM05D004653 ORTHO05D006221 7.6e-157 558.1 424 61.6
Glyma.04G093600 Glycine max HOM05D004653 ORTHO05D006221 1.3e-156 557.4 493 57.2
Nitab4.5_0000642g0300 Nicotiana tabacum HOM05D004653 ORTHO05D006221 8.4e-156 554.7 465 57.6
Oeu042971.1 Olea europaea HOM05D004653 ORTHO05D006221 3.5e-154 549.3 441 59.9
CAN.G853.20 Capsicum annuum HOM05D004653 ORTHO05D006221 6.0e-154 548.5 467 55.7
Oeu042973.1 Olea europaea HOM05D004653 ORTHO05D006221 9.0e-150 534.6 423 60.3
Cc07_g19270 Coffea canephora HOM05D004653 ORTHO05D006221 2.0e-149 533.5 466 54.1
MBI02_g18292_MAGBIO Magnolia biondii HOM05D004653 ORTHO05D006221 1.0e-148 531.2 466 54.3
Sopen03g032820 Solanum pennellii HOM05D004653 ORTHO05D006221 7.1e-147 525.0 463 54.4
Dinv44830 Davidia involucrata HOM05D004653 ORTHO05D006221 9.3e-147 524.6 450 58.2
Nitab4.5_0007586g0050 Nicotiana tabacum HOM05D004653 ORTHO05D006221 6.7e-145 518.5 473 54.3
Solyc03g113770.3 Solanum lycopersicum HOM05D004653 ORTHO05D006221 1.5e-144 517.3 463 53.8
SGA_v2.0_scaffold467G52033 Striga asiatica HOM05D004653 ORTHO05D006221 4.8e-143 512.3 464 55.4
Migut.I00062 Erythranthe guttata HOM05D004653 ORTHO05D006221 4.5e-141 505.8 460 53.5
SalBow5G2478 Salvia bowleyana HOM05D004653 ORTHO05D006221 1.4e-139 500.7 458 53.1
Cre08.g378200 Chlamydomonas reinhardtii HOM05D004653 ORTHO05D006221 3.2e-131 473.0 503 51.5
Peaxi162Scf00017g00233 Petunia axillaris HOM05D004653 ORTHO05D006221 1.2e-130 471.1 447 52.3
CSS0007986 Camellia sinensis var. sinensis HOM05D004653 ORTHO05D006221 2.3e-129 466.8 349 61.6
Oeu018527.2 Olea europaea HOM05D004653 ORTHO05D006221 7.4e-128 461.8 477 49.5
MSTRG.23084 Avicennia marina HOM05D004653 ORTHO05D006221 2.7e-114 416.8 350 57.7
Nitab4.5_0024258g0010 Nicotiana tabacum HOM05D004653 ORTHO05D006221 3.1e-110 403.3 326 59.8
Zm00001eb027880 Zea mays HOM05D004653 ORTHO05D006221 4.7e-98 362.8 301 60.1
PGSC0003DMG400024580 Solanum tuberosum HOM05D004653 ORTHO05D006221 8.3e-95 352.1 421 42.5
Lalb_Chr23g0270171 Lupinus albus HOM05D004653 ORTHO05D006221 7.5e-88 328.9 256 60.2
CBR_g24311 Chara braunii HOM05D000019 ORTHO05D000353 6.0e-85 319.3 261 59.4
MBI17_g06166_MAGBIO Magnolia biondii HOM05D004653 ORTHO05D006221 1.7e-84 317.8 317 50.8
MCO02G367 Micromonas commoda HOM05D004653 ORTHO05D006221 1.1e-78 298.5 244 61.5
CSS0017284 Camellia sinensis var. sinensis HOM05D004653 ORTHO05D006221 3.6e-74 283.5 260 51.2
SEGI_17033 Sequoiadendron giganteum HOM05D004653 ORTHO05D006221 6.2e-74 282.7 215 60.0
Glyma.06G095500 Glycine max HOM05D004653 ORTHO05D006221 6.4e-71 272.7 222 62.6
Actinidia10360 Actinidia chinensis HOM05D004653 ORTHO05D006221 6.0e-69 266.2 328 44.5
CBR_g24313 Chara braunii HOM05D004653 ORTHO05D006221 3.5e-61 240.4 162 68.5
Duzib116G0761 Durio zibethinus HOM05D004653 ORTHO05D006221 6.0e-53 213.0 160 66.2
Lalb_Chr23g0270161 Lupinus albus HOM05D004653 ORTHO05D006221 1.1e-43 182.2 145 60.0
SEGI_12419 Sequoiadendron giganteum HOM05D004653 ORTHO05D006221 1.9e-35 154.8 91 72.5
Nitab4.5_0005655g0030 Nicotiana tabacum HOM05D004653 ORTHO05D006221 8.2e-34 149.4 114 61.4
Cc06_g21090 Coffea canephora HOM05D004653 ORTHO05D006221 4.1e-33 147.1 101 69.3
Dinv42645 Davidia involucrata HOM05D004653 ORTHO05D006221 3.2e-30 137.5 156 46.8
Potri.005G159500 Populus trichocarpa HOM05D004653 ORTHO05D006221 4.3e-27 127.1 116 52.6
CSS0010132 Camellia sinensis var. sinensis HOM05D004653 ORTHO05D006221 5.0e-23 113.6 95 55.8
Glyma.06G095451 Glycine max HOM05D004653 ORTHO05D006221 3.2e-22 110.9 180 38.3
PRCOL_00006962 Prasinoderma coloniale HOM05D004653 ORTHO05D006221 1.2e-13 82.4 57 59.6
Dinv42644 Davidia involucrata HOM05D004653 ORTHO05D006221 6.7e-12 76.6 115 41.7
Lalb_Chr23g0270181 Lupinus albus HOM05D004653 ORTHO05D019566 1.8e-09 68.6 58 62.1
Gohir.A06G032660 Gossypium hirsutum HOM05D004653 ORTHO05D019566 2.0e-08 65.1 50 66.0
Gorai.010G036500 Gossypium raimondii HOM05D004653 ORTHO05D019566 2.0e-08 65.1 50 66.0
BcaB08g35370 Brassica carinata HOM05D004653 ORTHO05D006221 6.5e-07 60.1 56 51.8


User provided reference genes

Program Settings