Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c2_1780 Physcomitrium patens HOM05D007048 ORTHO05D008811 7.9e-71 270.4 143 100.0
SEGI_10153 Sequoiadendron giganteum HOM05D007048 ORTHO05D008811 1.5e-21 106.7 126 50.8
PSO339G2722 Papaver somniferum HOM05D007048 ORTHO05D008811 1.2e-18 97.1 123 48.8
Peaxi162Scf01168g00014 Petunia axillaris HOM05D007048 ORTHO05D008811 1.2e-18 97.1 114 49.1
Solyc07g054400.3 Solanum lycopersicum HOM05D007048 ORTHO05D008811 1.6e-18 96.7 99 51.5
PSO384G0987 Papaver somniferum HOM05D007048 ORTHO05D008811 2.7e-18 95.9 109 51.4
Sopen07g028330 Solanum pennellii HOM05D007048 ORTHO05D008820 3.5e-18 95.5 99 51.5
MELO3C035737.2 Cucumis melo HOM05D007048 ORTHO05D008811 4.6e-18 95.1 105 50.5
PGSC0003DMG400018389 Solanum tuberosum HOM05D007048 ORTHO05D008811 6.0e-18 94.7 99 51.5
AagrBONN_evm.TU.Sc2ySwM_362.2725 Anthoceros agrestis HOM05D007048 ORTHO05D008811 3.0e-17 92.4 117 47.9
CsaV3_1G009910 Cucumis sativus L. HOM05D007048 ORTHO05D008811 3.0e-17 92.4 105 48.6
Manes.14G045100 Manihot esculenta HOM05D007048 ORTHO05D008811 6.6e-17 91.3 134 44.8
Nitab4.5_0003119g0030 Nicotiana tabacum HOM05D007048 ORTHO05D008811 8.6e-17 90.9 107 49.5
EL10Ac5g11295 Beta vulgaris HOM05D007048 ORTHO05D008811 1.1e-16 90.5 100 50.0
MBI07_g41901_MAGBIO Magnolia biondii HOM05D007048 ORTHO05D008811 1.1e-16 90.5 100 52.0
SalBow1G8421 Salvia bowleyana HOM05D007048 ORTHO05D008811 1.1e-16 90.5 109 45.0
CANSAT56G3502 Cannabis sativa HOM05D007048 ORTHO05D008811 1.5e-16 90.1 99 51.5
CAN.G521.6 Capsicum annuum HOM05D007048 ORTHO05D008811 1.5e-16 90.1 99 48.5
Cc04_g05890 Coffea canephora HOM05D007048 ORTHO05D008811 1.5e-16 90.1 134 44.0
AT5G50930 Arabidopsis thaliana HOM05D007048 ORTHO05D008811 1.9e-16 89.7 136 43.4
CANSAT56G3230 Cannabis sativa HOM05D007048 ORTHO05D008811 1.9e-16 89.7 99 51.5
Migut.D01184 Erythranthe guttata HOM05D007048 ORTHO05D008811 1.9e-16 89.7 109 45.9
Atru.chr6.1912 Acer truncatum HOM05D007048 ORTHO05D008811 3.3e-16 89.0 100 49.0
Nitab4.5_0002584g0070 Nicotiana tabacum HOM05D007048 ORTHO05D008811 3.3e-16 89.0 142 41.5
Dinv23221 Davidia involucrata HOM05D007048 ORTHO05D008811 4.3e-16 88.6 99 49.5
BraA03t10934Z Brassica rapa HOM05D007048 ORTHO05D008811 7.3e-16 87.8 99 48.5
Cpa.g.sc13.165 Carica papaya HOM05D007048 ORTHO05D008811 7.3e-16 87.8 110 43.6
Ciclev10033023m.g Citrus clementina HOM05D007048 ORTHO05D008811 7.3e-16 87.8 116 44.0
Haze_07101 Corylus avellana HOM05D007048 ORTHO05D008811 7.3e-16 87.8 134 41.0
PGR031G3072 Punica granatum HOM05D007048 ORTHO05D008811 7.3e-16 87.8 99 49.5
QL10p000556 Quercus lobata HOM05D007048 ORTHO05D008811 7.3e-16 87.8 119 44.5
Cfa018710 Carpinus fangiana HOM05D007048 ORTHO05D008811 9.5e-16 87.4 99 48.5
RcHm_v2.0_Chr7g0188741 Rosa chinensis HOM05D007048 ORTHO05D008811 9.5e-16 87.4 100 48.0
Sp6g13100 Schrenkiella parvula HOM05D007048 ORTHO05D008811 9.5e-16 87.4 126 43.7
TWI39G0039 Tripterygium wilfordii HOM05D007048 ORTHO05D008811 9.5e-16 87.4 120 41.7
BcaNung07188 Brassica carinata HOM05D007048 ORTHO05D008811 1.2e-15 87.0 99 48.5
C03p19340 Brassica napus HOM05D007048 ORTHO05D008811 1.2e-15 87.0 99 48.5
BolC3t14320H Brassica oleracea HOM05D007048 ORTHO05D008811 1.2e-15 87.0 99 48.5
Thhalv10014960m.g Eutrema salsugineum HOM05D007048 ORTHO05D008811 1.2e-15 87.0 130 41.5
Prupe.5G142300 Prunus persica HOM05D007048 ORTHO05D008811 1.2e-15 87.0 100 49.0
FAN18G3224 Fragaria x ananassa HOM05D007048 ORTHO05D008811 1.6e-15 86.7 101 47.5
Carub.0008s1094 Capsella rubella HOM05D007048 ORTHO05D008811 2.1e-15 86.3 136 41.9
PGR031G2395 Punica granatum HOM05D007048 ORTHO05D008811 2.1e-15 86.3 108 45.4
Hund10045 Selenicereus undatus HOM05D007048 ORTHO05D008811 2.1e-15 86.3 120 42.5
TPR.G21584 Trifolium pratense HOM05D007048 ORTHO05D008811 2.1e-15 86.3 101 46.5
Actinidia18303 Actinidia chinensis HOM05D007048 ORTHO05D008811 2.8e-15 85.9 99 48.5
Hma1.2p1_0664F.1_g199000 Hydrangea macrophylla HOM05D007048 ORTHO05D008811 2.8e-15 85.9 99 48.5
Os04g0397700 Oryza sativa ssp. japonica HOM05D007048 ORTHO05D008811 2.8e-15 85.9 122 42.6
PGR031G3844 Punica granatum HOM05D007048 ORTHO05D008811 2.8e-15 85.9 99 48.5
ECA246G0638 Erigeron canadensis HOM05D003971 ORTHO05D004762 3.6e-15 85.5 100 48.0
Rhsim08G0196900 Rhododendron simsii HOM05D007048 ORTHO05D008811 3.6e-15 85.5 99 47.5
Ah.02g114610 Amaranthus hybridus HOM05D007048 ORTHO05D008811 4.7e-15 85.1 100 48.0
AL8G25120 Arabidopsis lyrata HOM05D007048 ORTHO05D008811 4.7e-15 85.1 136 41.9
A03p16450 Brassica napus HOM05D007048 ORTHO05D008811 4.7e-15 85.1 132 40.9
TWI14G0368 Tripterygium wilfordii HOM05D007048 ORTHO05D008811 4.7e-15 85.1 100 46.0
arahy.Tifrunner.gnm1.ann1.QNIR3T Arachis hypogaea HOM05D007048 ORTHO05D008811 6.2e-15 84.7 123 42.3
Medtr3g098660 Medicago truncatula HOM05D007048 ORTHO05D008811 6.2e-15 84.7 134 41.0
CARHR257290 Cardamine hirsuta HOM05D007048 ORTHO05D008811 8.1e-15 84.3 130 40.8
FAN08G0367 Fragaria x ananassa HOM05D006891 ORTHO05D008671 8.1e-15 84.3 100 47.0
ClCG03G004020 Citrullus lanatus HOM05D007048 ORTHO05D008811 1.1e-14 84.0 114 45.6
vmacro19180 Vaccinium macrocarpon HOM05D007048 ORTHO05D008811 1.1e-14 84.0 119 43.7
MD06G1131300 Malus domestica HOM05D007048 ORTHO05D008811 1.4e-14 83.6 100 47.0
Lj1g0016164 Lotus japonicus HOM05D007048 ORTHO05D008811 1.8e-14 83.2 114 41.2
Sc22g0003410 Simmondsia chinensis HOM05D007048 ORTHO05D008811 1.8e-14 83.2 128 41.4
Psat5g055240 Pisum sativum HOM05D007048 ORTHO05D008811 2.3e-14 82.8 132 40.2
Duzib068G0404 Durio zibethinus HOM05D007048 ORTHO05D008811 3.1e-14 82.4 99 45.5
TAR475G0007 Trochodendron aralioides HOM05D007048 ORTHO05D008811 4.0e-14 82.0 99 46.5
TAR629G1913 Trochodendron aralioides HOM05D007048 ORTHO05D008811 4.0e-14 82.0 99 46.5
GSVIVG01008645001 Vitis vinifera HOM05D007048 ORTHO05D008811 5.2e-14 81.6 101 46.5
Aqoxy3G01543 Aquilegia oxysepala HOM05D007048 ORTHO05D008811 6.8e-14 81.3 99 47.5
arahy.Tifrunner.gnm1.ann1.CS080T Arachis hypogaea HOM05D007048 ORTHO05D008811 6.8e-14 81.3 114 42.1
arahy.Tifrunner.gnm1.ann1.8FCI62 Arachis hypogaea HOM05D007048 ORTHO05D008811 1.2e-13 80.5 116 42.2
CiPaw.11G000300 Carya illinoinensis HOM05D007048 ORTHO05D008811 1.2e-13 80.5 99 45.5
FAN04G3007 Fragaria x ananassa HOM05D007048 ORTHO05D008811 2.0e-13 79.7 101 45.5
Gohir.D07G051200 Gossypium hirsutum HOM05D007048 ORTHO05D008811 2.0e-13 79.7 123 40.7
Gorai.001G054300 Gossypium raimondii HOM05D007048 ORTHO05D008811 2.0e-13 79.7 123 40.7
HanXRQChr10g0316061 Helianthus annuus HOM05D007048 ORTHO05D008811 2.0e-13 79.7 99 45.5
ATR0582G167 Amborella trichopoda HOM05D007048 ORTHO05D008811 2.6e-13 79.3 93 49.5
Gohir.A07G046900 Gossypium hirsutum HOM05D007048 ORTHO05D008811 2.6e-13 79.3 99 44.4
Lalb_Chr08g0237541 Lupinus albus HOM05D007048 ORTHO05D008811 2.6e-13 79.3 116 41.4
Sabra15G0126100 Salix brachista HOM05D007048 ORTHO05D008811 2.6e-13 79.3 153 35.9
Sed0017197 Sechium edule HOM05D007048 ORTHO05D008811 2.6e-13 79.3 101 46.5
Aa31LG3G7430 Aethionema arabicum HOM05D007048 ORTHO05D008811 3.4e-13 79.0 99 44.4
Hma1.2p1_0664F.1_g198980 Hydrangea macrophylla HOM05D007048 ORTHO05D008811 9.9e-13 77.4 72 54.2
Hma1.2p1_0664F.1_g198990 Hydrangea macrophylla HOM05D007048 ORTHO05D008811 9.9e-13 77.4 72 54.2
Phvul.009G161500 Phaseolus vulgaris HOM05D007048 ORTHO05D008811 9.9e-13 77.4 99 44.4
Thecc.03G140000 Theobroma cacao HOM05D007048 ORTHO05D008811 9.9e-13 77.4 136 38.2
Glyma.04G201000 Glycine max HOM05D007048 ORTHO05D008811 1.3e-12 77.0 99 44.4
arahy.Tifrunner.gnm1.ann1.DD5QTF Arachis hypogaea HOM05D007048 ORTHO05D008811 1.7e-12 76.6 114 39.5
Mapoly0109s0028 Marchantia polymorpha HOM05D007048 ORTHO05D008811 2.2e-12 76.3 99 43.4
Potri.015G105900 Populus trichocarpa HOM05D007048 ORTHO05D008811 2.9e-12 75.9 134 38.1
VMungo1309G1627 Vigna mungo HOM05D007048 ORTHO05D008811 6.4e-12 74.7 99 43.4
Lsat_1_v5_gn_5_10141 Lactuca sativa HOM05D007048 ORTHO05D008811 1.9e-11 73.2 117 38.5
AUR62009534 Chenopodium quinoa HOM05D007048 ORTHO05D008811 3.2e-11 72.4 79 49.4
AUR62044083 Chenopodium quinoa HOM05D007048 ORTHO05D008811 5.4e-11 71.6 79 49.4
FvH4_5g09450 Fragaria vesca HOM05D007048 ORTHO05D008811 5.4e-11 71.6 80 48.8
SGA_v2.0_scaffold40G15679 Striga asiatica HOM05D007048 ORTHO05D008811 9.2e-11 70.9 127 37.0
AUR62041697 Chenopodium quinoa HOM05D007048 ORTHO05D008811 1.6e-10 70.1 79 48.1
Glyma.06G164400 Glycine max HOM05D007048 ORTHO05D008811 2.1e-10 69.7 99 40.4
Zm00001eb084850 Zea mays HOM05D007048 ORTHO05D008811 4.6e-10 68.6 100 44.0
BcaB01g01606 Brassica carinata HOM05D007048 ORTHO05D008811 6.0e-10 68.2 87 48.3
MD14G1147700 Malus domestica HOM05D007048 ORTHO05D008811 6.0e-10 68.2 79 46.8
HPP92_008245 Vanilla planifolia HOM05D007048 ORTHO05D008811 6.0e-10 68.2 81 48.1
Eucgr.K02194 Eucalyptus grandis HOM05D007048 ORTHO05D008811 1.3e-09 67.0 159 34.6
CDE05G0753 Ceratophyllum demersum HOM05D000512 ORTHO05D000861 2.3e-09 66.2 86 39.5
PGR044G0448 Punica granatum HOM05D007048 ORTHO05D008811 8.6e-09 64.3 106 34.9
Nn3g16280 Nelumbo nucifera HOM05D007048 ORTHO05D008811 1.5e-08 63.5 66 47.0
Nn1g04900 Nelumbo nucifera HOM05D007048 ORTHO05D008811 2.1e-07 59.7 73 45.2
unitig_747.g21321 Utricularia gibba HOM05D007048 ORTHO05D008811 2.4e-06 56.2 60 51.7
CSS0012628 Camellia sinensis var. sinensis HOM05D007048 ORTHO05D008811 4.0e-06 55.5 59 54.2


User provided reference genes

Program Settings