Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c2_13970 Physcomitrium patens HOM05D006377 ORTHO05D008001 9.7e-140 500.4 293 100.0
Pp3c1_22450 Physcomitrium patens HOM05D006377 ORTHO05D008001 3.9e-64 249.2 217 65.9
AagrBONN_evm.TU.Sc2ySwM_368.50 Anthoceros agrestis HOM05D006377 ORTHO05D008001 2.1e-46 190.3 115 77.4
AagrBONN_evm.TU.Sc2ySwM_344.5347 Anthoceros agrestis HOM05D006377 ORTHO05D008001 6.2e-46 188.7 135 65.9
AagrBONN_evm.TU.Sc2ySwM_368.3396 Anthoceros agrestis HOM05D006377 ORTHO05D008001 3.4e-44 183.0 115 73.0
MELO3C004358.2 Cucumis melo HOM05D006377 ORTHO05D008001 4.5e-44 182.6 109 78.0
Mapoly0032s0089 Marchantia polymorpha HOM05D006377 ORTHO05D008001 9.9e-44 181.4 135 63.7
CsaV3_2G004360 Cucumis sativus L. HOM05D006377 ORTHO05D008001 1.3e-43 181.0 109 77.1
ClCG02G016370 Citrullus lanatus HOM05D006377 ORTHO05D008001 1.7e-43 180.6 109 77.1
Lalb_Chr15g0076921 Lupinus albus HOM05D006377 ORTHO05D008001 1.7e-43 180.6 109 78.0
ECA238G1597 Erigeron canadensis HOM05D006377 ORTHO05D008001 2.2e-43 180.3 109 78.0
HanXRQChr04g0094091 Helianthus annuus HOM05D006377 ORTHO05D008001 2.2e-43 180.3 121 73.6
Haze_04319 Corylus avellana HOM05D006377 ORTHO05D008001 4.9e-43 179.1 109 77.1
Lsat_1_v5_gn_2_67840 Lactuca sativa HOM05D006377 ORTHO05D008001 6.4e-43 178.7 109 77.1
Thecc.05G289700 Theobroma cacao HOM05D006377 ORTHO05D008001 6.4e-43 178.7 122 73.0
Sed0019582 Sechium edule HOM05D006377 ORTHO05D008001 8.4e-43 178.3 121 71.9
Ah.06g192660 Amaranthus hybridus HOM05D006377 ORTHO05D008001 1.1e-42 177.9 109 77.1
arahy.Tifrunner.gnm1.ann1.VW98FE Arachis hypogaea HOM05D006377 ORTHO05D008001 1.9e-42 177.2 120 72.5
QL03p023258 Quercus lobata HOM05D006377 ORTHO05D008001 1.9e-42 177.2 108 75.9
QL03p023964 Quercus lobata HOM05D006377 ORTHO05D008001 1.9e-42 177.2 108 75.9
Cpa.g.sc264.18 Carica papaya HOM05D006377 ORTHO05D008001 2.4e-42 176.8 109 76.1
Duzib177G1058 Durio zibethinus HOM05D006377 ORTHO05D008001 3.2e-42 176.4 109 76.1
Manes.08G127500 Manihot esculenta HOM05D006377 ORTHO05D008001 3.2e-42 176.4 109 76.1
Atru.chr2.718 Acer truncatum HOM05D006377 ORTHO05D008001 5.4e-42 175.6 120 69.2
Gohir.D11G265800 Gossypium hirsutum HOM05D006377 ORTHO05D008001 9.3e-42 174.9 109 76.1
Gorai.007G285800 Gossypium raimondii HOM05D006377 ORTHO05D008001 9.3e-42 174.9 109 76.1
Nn2g12517 Nelumbo nucifera HOM05D006377 ORTHO05D008001 1.2e-41 174.5 109 75.2
CiPaw.08G178700 Carya illinoinensis HOM05D006377 ORTHO05D008001 2.1e-41 173.7 109 75.2
Potri.013G035700 Populus trichocarpa HOM05D006377 ORTHO05D008001 2.1e-41 173.7 109 74.3
Gohir.A11G256100 Gossypium hirsutum HOM05D006377 ORTHO05D008001 2.7e-41 173.3 109 76.1
Sc20g0000200 Simmondsia chinensis HOM05D006377 ORTHO05D008001 2.7e-41 173.3 121 69.4
FAN05G1987 Fragaria x ananassa HOM05D006377 ORTHO05D008001 4.6e-41 172.6 130 66.9
FAN05G4075 Fragaria x ananassa HOM05D006377 ORTHO05D008001 4.6e-41 172.6 130 66.9
Glyma.03G245100 Glycine max HOM05D006377 ORTHO05D008001 4.6e-41 172.6 109 73.4
Hma1.2p1_0332F.1_g127770 Hydrangea macrophylla HOM05D006377 ORTHO05D008001 4.6e-41 172.6 119 72.3
MD04G1219300 Malus domestica HOM05D006377 ORTHO05D008001 4.6e-41 172.6 109 75.2
MD12G1236300 Malus domestica HOM05D006377 ORTHO05D008001 4.6e-41 172.6 124 69.4
FvH4_6g03680 Fragaria vesca HOM05D006377 ORTHO05D008001 6.0e-41 172.2 132 63.6
FAN14G3144 Fragaria x ananassa HOM05D006377 ORTHO05D008001 6.0e-41 172.2 132 63.6
Cfa006472 Carpinus fangiana HOM05D006377 ORTHO05D008001 7.9e-41 171.8 109 74.3
Ciclev10002532m.g Citrus clementina HOM05D006377 ORTHO05D008001 7.9e-41 171.8 109 73.4
Medtr7g114590 Medicago truncatula HOM05D006377 ORTHO05D008001 7.9e-41 171.8 129 62.8
SEGI_38373 Sequoiadendron giganteum HOM05D006377 ORTHO05D008001 7.9e-41 171.8 123 66.7
Ca_09403_v3 Cicer arietinum L. HOM05D006377 ORTHO05D008001 1.0e-40 171.4 129 65.1
Ca_30164_v3 Cicer arietinum L. HOM05D006377 ORTHO05D008001 1.0e-40 171.4 129 65.1
RcHm_v2.0_Chr3g0452211 Rosa chinensis HOM05D006377 ORTHO05D008001 1.0e-40 171.4 109 74.3
TAR365G0273 Trochodendron aralioides HOM05D006377 ORTHO05D008001 1.0e-40 171.4 108 75.0
Aa31LG2G12300 Aethionema arabicum HOM05D006377 ORTHO05D008001 1.3e-40 171.0 120 65.0
Lj1g0014721 Lotus japonicus HOM05D006377 ORTHO05D008001 1.3e-40 171.0 134 61.2
PGR004G2824 Punica granatum HOM05D006377 ORTHO05D008001 1.3e-40 171.0 109 73.4
TWI36G1766 Tripterygium wilfordii HOM05D006377 ORTHO05D008001 1.3e-40 171.0 109 74.3
TPR.G7004 Trifolium pratense HOM05D006377 ORTHO05D008001 1.8e-40 170.6 121 65.3
FAN02G4534 Fragaria x ananassa HOM05D006377 ORTHO05D008001 2.3e-40 170.2 120 69.2
VMungo0540G1412 Vigna mungo HOM05D006377 ORTHO05D008001 2.3e-40 170.2 109 71.6
Phvul.006G099300 Phaseolus vulgaris HOM05D006377 ORTHO05D008001 3.0e-40 169.9 109 71.6
vmacro05068 Vaccinium macrocarpon HOM05D006377 ORTHO05D008001 3.9e-40 169.5 112 72.3
THA.LOC104805815 Tarenaya hassleriana HOM05D006377 ORTHO05D008001 5.1e-40 169.1 118 69.5
CAN.G134.174 Capsicum annuum HOM05D006377 ORTHO05D008001 6.7e-40 168.7 109 74.3
PSO210G5336 Papaver somniferum HOM05D006377 ORTHO05D008001 6.7e-40 168.7 118 66.9
EL10Ac4g09192 Beta vulgaris HOM05D006377 ORTHO05D008001 8.7e-40 168.3 107 73.8
MBI19_g37073_MAGBIO Magnolia biondii HOM05D006377 ORTHO05D008001 8.7e-40 168.3 112 71.4
Prupe.6G338600 Prunus persica HOM05D006377 ORTHO05D008001 1.1e-39 167.9 109 72.5
AT1G54500 Arabidopsis thaliana HOM05D006377 ORTHO05D008001 1.5e-39 167.5 137 60.6
PSO761G0064 Papaver somniferum HOM05D006377 ORTHO05D008001 1.5e-39 167.5 118 66.1
CSS0017897 Camellia sinensis var. sinensis HOM05D006377 ORTHO05D008001 1.9e-39 167.2 118 67.8
Actinidia05760 Actinidia chinensis HOM05D006377 ORTHO05D008001 2.5e-39 166.8 109 71.6
Sabra05G0044300 Salix brachista HOM05D006377 ORTHO05D008001 2.5e-39 166.8 109 71.6
Solyc01g097910.2 Solanum lycopersicum HOM05D006377 ORTHO05D008001 3.3e-39 166.4 109 73.4
Sopen01g041500 Solanum pennellii HOM05D006377 ORTHO05D008001 3.3e-39 166.4 109 73.4
PGSC0003DMG400022504 Solanum tuberosum HOM05D006377 ORTHO05D008001 3.3e-39 166.4 109 73.4
CSS0039444 Camellia sinensis var. sinensis HOM05D006377 ORTHO05D008001 4.3e-39 166.0 120 68.3
Migut.E01572 Erythranthe guttata HOM05D006377 ORTHO05D008001 4.3e-39 166.0 120 68.3
Nitab4.5_0002840g0030 Nicotiana tabacum HOM05D006377 ORTHO05D008001 4.3e-39 166.0 109 73.4
SpUn0001_0720 Schrenkiella parvula HOM05D006377 ORTHO05D008001 4.3e-39 166.0 120 64.2
Nitab4.5_0002361g0100 Nicotiana tabacum HOM05D006377 ORTHO05D008001 5.6e-39 165.6 109 73.4
Thhalv10023702m.g Eutrema salsugineum HOM05D006377 ORTHO05D008001 7.4e-39 165.2 120 65.0
Aqoxy2G02484 Aquilegia oxysepala HOM05D006377 ORTHO05D008001 9.6e-39 164.9 112 69.6
CARHR055600 Cardamine hirsuta HOM05D006377 ORTHO05D008001 9.6e-39 164.9 109 69.7
Oeu027050.1 Olea europaea HOM05D006377 ORTHO05D008001 9.6e-39 164.9 120 65.0
Os08g0323400 Oryza sativa ssp. japonica HOM05D006377 ORTHO05D008001 9.6e-39 164.9 109 71.6
BcaB02g08603 Brassica carinata HOM05D006377 ORTHO05D008001 1.3e-38 164.5 121 65.3
AL1G64910 Arabidopsis lyrata HOM05D006377 ORTHO05D008001 1.6e-38 164.1 137 59.1
CDE01G0680 Ceratophyllum demersum HOM05D000526 ORTHO05D000956 2.1e-38 163.7 107 72.0
CBR_g55374 Chara braunii HOM05D006377 ORTHO05D008001 2.1e-38 163.7 107 70.1
SGA_v2.0_scaffold35G13993 Striga asiatica HOM05D006377 ORTHO05D008001 2.1e-38 163.7 109 70.6
BcaC02g09303 Brassica carinata HOM05D006377 ORTHO05D008001 3.7e-38 162.9 108 69.4
A04p07500 Brassica napus HOM05D006377 ORTHO05D008001 3.7e-38 162.9 108 69.4
C04p41160 Brassica napus HOM05D006377 ORTHO05D008001 3.7e-38 162.9 108 69.4
BolC4t25698H Brassica oleracea HOM05D006377 ORTHO05D008001 3.7e-38 162.9 108 69.4
BraA04t16445Z Brassica rapa HOM05D006377 ORTHO05D008001 3.7e-38 162.9 108 69.4
Carub.0002s0934 Capsella rubella HOM05D006377 ORTHO05D008001 3.7e-38 162.9 120 64.2
CDE12G0044 Ceratophyllum demersum HOM05D000526 ORTHO05D000956 4.8e-38 162.5 108 70.4
Rhsim07G0175800 Rhododendron simsii HOM05D006377 ORTHO05D008001 6.2e-38 162.2 103 73.8
Cc02_g31420 Coffea canephora HOM05D006377 ORTHO05D008001 8.1e-38 161.8 109 70.6
SalBow5G2979 Salvia bowleyana HOM05D006377 ORTHO05D008001 8.1e-38 161.8 109 70.6
Potri.005G049000 Populus trichocarpa HOM05D006377 ORTHO05D008001 1.4e-37 161.0 109 68.8
FAN09G4008 Fragaria x ananassa HOM05D006377 ORTHO05D008001 2.4e-37 160.2 125 61.6
ATR0796G227 Amborella trichopoda HOM05D006377 ORTHO05D008001 3.1e-37 159.8 105 70.5
MSTRG.3650 Avicennia marina HOM05D006377 ORTHO05D008001 4.0e-37 159.5 120 65.0
Lj7P475T32 Lonicera japonica HOM05D006377 ORTHO05D008001 5.3e-37 159.1 108 68.5
Oeu012478.1 Olea europaea HOM05D006377 ORTHO05D008001 5.3e-37 159.1 120 62.5
SMO137G0026 Selaginella moellendorffii HOM05D006377 ORTHO05D008001 5.3e-37 159.1 108 70.4
Zm00001eb061720 Zea mays HOM05D006377 ORTHO05D008001 5.3e-37 159.1 108 68.5
Zm00001eb140200 Zea mays HOM05D006377 ORTHO05D008001 5.3e-37 159.1 108 68.5
unitig_0.g1675 Utricularia gibba HOM05D006377 ORTHO05D008001 6.9e-37 158.7 109 67.0
Zm00001eb061700 Zea mays HOM05D006377 ORTHO05D008001 6.9e-37 158.7 108 68.5
HPP92_001948 Vanilla planifolia HOM05D006377 ORTHO05D008001 1.5e-36 157.5 132 60.6
Zm00001eb061690 Zea mays HOM05D006377 ORTHO05D008001 2.0e-36 157.1 107 68.2
Peaxi162Scf00404g00014 Petunia axillaris HOM05D006377 ORTHO05D008001 4.5e-36 156.0 126 61.1
AUR62000968 Chenopodium quinoa HOM05D006377 ORTHO05D008001 2.9e-35 153.3 94 73.4
Sabra13G0035000 Salix brachista HOM05D006377 ORTHO05D008001 3.2e-34 149.8 109 67.0
Zm00001eb061710 Zea mays HOM05D006377 ORTHO05D008001 1.6e-33 147.5 108 64.8
Psat5g039080 Pisum sativum HOM05D006377 ORTHO05D008001 3.5e-33 146.4 92 69.6
Zm00001eb061670 Zea mays HOM05D006377 ORTHO05D008001 6.7e-32 142.1 90 70.0
Dinv11572 Davidia involucrata HOM05D006377 ORTHO05D008001 1.5e-31 141.0 90 71.1
MCO15G508 Micromonas commoda HOM05D006377 ORTHO05D008001 1.9e-31 140.6 132 50.8
Duzib128G0229 Durio zibethinus HOM05D006377 ORTHO05D008001 4.8e-30 136.0 113 58.4
Cre07.g315150 Chlamydomonas reinhardtii HOM05D006377 ORTHO05D008001 2.0e-28 130.6 121 51.2
AUR62004997 Chenopodium quinoa HOM05D006377 ORTHO05D008001 5.8e-28 129.0 78 73.1
Actinidia30919 Actinidia chinensis HOM05D006377 ORTHO05D008001 7.6e-28 128.6 78 74.4
Manes.09G157000 Manihot esculenta HOM05D006377 ORTHO05D008001 1.7e-27 127.5 80 71.2
PRCOL_00004455 Prasinoderma coloniale HOM05D006377 ORTHO05D008001 1.2e-25 121.3 108 51.9
DCAR_009137 Daucus carota HOM05D006377 ORTHO05D008001 1.0e-24 118.2 76 67.1
unitig_748.g7013 Utricularia gibba HOM05D000757 ORTHO05D000622 1.1e-23 114.8 77 62.3
Hma1.2p1_0332F.1_g127760 Hydrangea macrophylla HOM05D006377 ORTHO05D008001 3.0e-16 90.1 69 62.3
Zm00001eb061680 Zea mays HOM05D006377 ORTHO05D008001 2.8e-14 83.6 74 50.0
Hma1.2p1_0332F.1_g127740 Hydrangea macrophylla HOM05D006377 ORTHO05D008001 2.6e-07 60.5 63 50.8


User provided reference genes

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