Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c2_12110 Physcomitrium patens HOM05D005493 ORTHO05D007154 7.7e-195 683.7 366 100.0
Pp3c1_33120 Physcomitrium patens HOM05D005493 ORTHO05D007154 5.1e-122 441.8 327 71.9
TPR.G17550 Trifolium pratense HOM05D005493 ORTHO05D007154 9.5e-60 235.0 280 48.9
TAR626G1878 Trochodendron aralioides HOM05D005493 ORTHO05D007154 6.1e-59 232.3 309 44.0
SalBow8G5358 Salvia bowleyana HOM05D005493 ORTHO05D007154 1.2e-57 228.0 290 45.5
Duzib192G0504 Durio zibethinus HOM05D005493 ORTHO05D007154 1.5e-57 227.6 318 44.0
CAN.G1156.21 Capsicum annuum HOM05D005493 ORTHO05D007154 2.6e-57 226.9 271 47.6
Hma1.2p1_1175F.1_g264030 Hydrangea macrophylla HOM05D005493 ORTHO05D007154 7.5e-57 225.3 276 46.7
Medtr2g027010 Medicago truncatula HOM05D005493 ORTHO05D007154 7.5e-57 225.3 284 46.8
ClCG01G010900 Citrullus lanatus HOM05D005493 ORTHO05D007154 1.3e-56 224.6 341 41.6
DCAR_006316 Daucus carota HOM05D005493 ORTHO05D007154 1.3e-56 224.6 273 46.5
Phvul.006G138500 Phaseolus vulgaris HOM05D005493 ORTHO05D007154 1.3e-56 224.6 321 43.6
VMungo0540G1721 Vigna mungo HOM05D005493 ORTHO05D007154 1.3e-56 224.6 289 46.4
HanXRQChr16g0515751 Helianthus annuus HOM05D005493 ORTHO05D007154 2.2e-56 223.8 302 43.4
CiPaw.10G081900 Carya illinoinensis HOM05D005493 ORTHO05D007154 3.7e-56 223.0 330 44.5
Lsat_1_v5_gn_4_63901 Lactuca sativa HOM05D005493 ORTHO05D007154 3.7e-56 223.0 294 44.9
Mapoly0011s0174 Marchantia polymorpha HOM05D005493 ORTHO05D007154 4.9e-56 222.6 279 47.0
CSS0047473 Camellia sinensis var. sinensis HOM05D005493 ORTHO05D007154 1.8e-55 220.7 319 44.8
CsaV3_1G015560 Cucumis sativus L. HOM05D005493 ORTHO05D007154 1.8e-55 220.7 332 42.8
MELO3C026067.2 Cucumis melo HOM05D005493 ORTHO05D007154 2.4e-55 220.3 306 45.1
Dinv02850 Davidia involucrata HOM05D005493 ORTHO05D007154 2.4e-55 220.3 262 49.2
THA.LOC104806738 Tarenaya hassleriana HOM05D005493 ORTHO05D007154 4.1e-55 219.5 300 44.0
Glyma.09G014500 Glycine max HOM05D005493 ORTHO05D007154 5.4e-55 219.2 311 43.1
Gohir.D05G178600 Gossypium hirsutum HOM05D005493 ORTHO05D007154 2.0e-54 217.2 305 45.2
Gorai.009G184000 Gossypium raimondii HOM05D005493 ORTHO05D007154 2.7e-54 216.9 325 43.4
Duzib160G0837 Durio zibethinus HOM05D005493 ORTHO05D007154 3.5e-54 216.5 300 43.7
Thecc.06G236400 Theobroma cacao HOM05D005493 ORTHO05D007154 4.5e-54 216.1 308 43.8
Psat1g172480 Pisum sativum HOM05D005493 ORTHO05D007154 5.9e-54 215.7 280 46.4
Cc09_g00320 Coffea canephora HOM05D005493 ORTHO05D007154 7.8e-54 215.3 299 42.8
Gohir.A05G175500 Gossypium hirsutum HOM05D005493 ORTHO05D007154 1.7e-53 214.2 271 47.6
PGR042G0366 Punica granatum HOM05D005493 ORTHO05D007154 1.7e-53 214.2 304 44.4
Manes.13G088900 Manihot esculenta HOM05D005493 ORTHO05D007154 2.3e-53 213.8 302 44.0
PSO339G5884 Papaver somniferum HOM05D005493 ORTHO05D007154 2.3e-53 213.8 312 43.3
Glyma.15G120100 Glycine max HOM05D005493 ORTHO05D007154 6.6e-53 212.2 270 45.9
Lj1A1246T23 Lonicera japonica HOM05D005493 ORTHO05D007154 6.6e-53 212.2 282 44.7
Nitab4.5_0001296g0130 Nicotiana tabacum HOM05D005493 ORTHO05D007154 6.6e-53 212.2 238 47.9
Potri.016G005500 Populus trichocarpa HOM05D005493 ORTHO05D007154 1.9e-52 210.7 320 42.8
TWI63G0139 Tripterygium wilfordii HOM05D005493 ORTHO05D007154 2.5e-52 210.3 273 45.1
AUR62033011 Chenopodium quinoa HOM05D005493 ORTHO05D007154 3.3e-52 209.9 280 45.0
TWI38G1153 Tripterygium wilfordii HOM05D005493 ORTHO05D007154 3.3e-52 209.9 304 43.8
Actinidia39254 Actinidia chinensis HOM05D005493 ORTHO05D007154 4.3e-52 209.5 326 42.3
Aqoxy1G04259 Aquilegia oxysepala HOM05D005493 ORTHO05D007154 5.6e-52 209.1 274 46.0
PGSC0003DMG400013365 Solanum tuberosum HOM05D005493 ORTHO05D007154 7.3e-52 208.8 275 45.1
ECA232G3574 Erigeron canadensis HOM05D005493 ORTHO05D007154 1.2e-51 208.0 291 45.4
Aa31sc219G70 Aethionema arabicum HOM05D005493 ORTHO05D007154 1.6e-51 207.6 309 42.1
arahy.Tifrunner.gnm1.ann1.N8508C Arachis hypogaea HOM05D005493 ORTHO05D007154 2.1e-51 207.2 294 43.2
Lj6g0009296 Lotus japonicus HOM05D005493 ORTHO05D007154 2.1e-51 207.2 295 45.4
Hund29945 Selenicereus undatus HOM05D005493 ORTHO05D007154 2.1e-51 207.2 289 43.9
Eucgr.E03858 Eucalyptus grandis HOM05D005493 ORTHO05D007154 6.1e-51 205.7 297 42.4
Sed0001140 Sechium edule HOM05D005493 ORTHO05D007154 6.1e-51 205.7 339 39.8
Lalb_Chr18g0057311 Lupinus albus HOM05D005493 ORTHO05D007154 8.0e-51 205.3 330 41.2
Cpa.g.sc27.228 Carica papaya HOM05D005493 ORTHO05D007154 1.0e-50 204.9 286 42.3
Nn1g07522 Nelumbo nucifera HOM05D005493 ORTHO05D007154 1.4e-50 204.5 282 44.7
COL.COLO4_31918 Corchorus olitorius HOM05D005493 ORTHO05D007154 3.0e-50 203.4 239 48.1
Ah.11g043160 Amaranthus hybridus HOM05D005493 ORTHO05D007154 6.8e-50 202.2 367 39.0
CDE05G0023 Ceratophyllum demersum HOM05D005493 ORTHO05D007154 8.9e-50 201.8 287 41.8
Zm00001eb253250 Zea mays HOM05D005493 ORTHO05D007154 1.2e-49 201.4 297 41.8
SGA_v2.0_scaffold7G03695 Striga asiatica HOM05D005493 ORTHO05D007154 2.0e-49 200.7 324 41.0
arahy.Tifrunner.gnm1.ann1.2D6L40 Arachis hypogaea HOM05D005493 ORTHO05D007154 5.7e-49 199.1 302 42.1
Peaxi162Scf00827g00517 Petunia axillaris HOM05D005493 ORTHO05D007154 5.7e-49 199.1 214 48.6
EL10Ac8g19414 Beta vulgaris HOM05D005493 ORTHO05D007154 1.3e-48 198.0 337 40.1
CBR_g3993 Chara braunii HOM05D005493 ORTHO05D007154 1.3e-48 198.0 242 45.9
FAN28G0158 Fragaria x ananassa HOM05D005493 ORTHO05D007154 2.9e-48 196.8 267 44.2
Rhsim13G0140700 Rhododendron simsii HOM05D005493 ORTHO05D007154 2.9e-48 196.8 284 43.0
Ca_00763_v3 Cicer arietinum L. HOM05D005493 ORTHO05D007154 3.7e-48 196.4 196 52.6
Potri.006G004900 Populus trichocarpa HOM05D005493 ORTHO05D007154 4.9e-48 196.1 325 41.2
Solyc11g012760.2 Solanum lycopersicum HOM05D005493 ORTHO05D007154 4.9e-48 196.1 213 49.3
SGA_v2.0_scaffold186G40127 Striga asiatica HOM05D005493 ORTHO05D007154 4.9e-48 196.1 266 42.9
Haze_07019 Corylus avellana HOM05D005493 ORTHO05D007154 6.4e-48 195.7 215 49.3
Cfa000035 Carpinus fangiana HOM05D005493 ORTHO05D007154 8.3e-48 195.3 215 49.3
FAN23G1811 Fragaria x ananassa HOM05D005493 ORTHO05D007154 1.4e-47 194.5 225 46.2
Sopen11g007500 Solanum pennellii HOM05D005493 ORTHO05D007154 1.4e-47 194.5 213 48.8
MSTRG.16053 Avicennia marina HOM05D005493 ORTHO05D007154 1.8e-47 194.1 327 36.7
FvH4_1g24140 Fragaria vesca HOM05D005493 ORTHO05D007154 2.4e-47 193.7 231 45.0
FAN19G1729 Fragaria x ananassa HOM05D005493 ORTHO05D007154 2.4e-47 193.7 231 45.0
BcaB07g30764 Brassica carinata HOM05D005493 ORTHO05D007154 7.0e-47 192.2 294 41.5
C07p31340 Brassica napus HOM05D005493 ORTHO05D007154 9.2e-47 191.8 296 41.2
MBI14_g10146_MAGBIO Magnolia biondii HOM05D005493 ORTHO05D007154 9.2e-47 191.8 178 53.9
Sp2g12390 Schrenkiella parvula HOM05D005493 ORTHO05D007154 1.6e-46 191.0 324 39.8
Atru.chr1.2258 Acer truncatum HOM05D005493 ORTHO05D007154 2.0e-46 190.7 309 40.5
ATR0751G138 Amborella trichopoda HOM05D005493 ORTHO05D007154 2.7e-46 190.3 299 40.8
AagrBONN_evm.TU.Sc2ySwM_362.2751 Anthoceros agrestis HOM05D005493 ORTHO05D007154 2.7e-46 190.3 236 47.0
RcHm_v2.0_Chr2g0120371 Rosa chinensis HOM05D005493 ORTHO05D007154 5.9e-46 189.1 213 47.9
Dinv15338 Davidia involucrata HOM05D005493 ORTHO05D007154 7.8e-46 188.7 272 43.8
Oeu025962.1 Olea europaea HOM05D005493 ORTHO05D007154 7.8e-46 188.7 191 49.2
Migut.M01444 Erythranthe guttata HOM05D005493 ORTHO05D007154 1.3e-45 188.0 241 44.8
A06p44860 Brassica napus HOM05D005493 ORTHO05D007154 2.3e-45 187.2 298 40.9
BraA06t27358Z Brassica rapa HOM05D005493 ORTHO05D007154 6.6e-45 185.7 298 40.6
CARHR173630 Cardamine hirsuta HOM05D005493 ORTHO05D007154 8.6e-45 185.3 303 40.6
BcaC06g31350 Brassica carinata HOM05D005493 ORTHO05D007154 1.5e-44 184.5 200 49.5
Carub.0008s0010 Capsella rubella HOM05D005493 ORTHO05D007154 1.9e-44 184.1 321 39.6
BcaC04g21607 Brassica carinata HOM05D005493 ORTHO05D007154 2.5e-44 183.7 286 41.3
SEGI_02626 Sequoiadendron giganteum HOM05D005493 ORTHO05D007154 2.5e-44 183.7 260 43.8
C09p29920 Brassica napus HOM05D005493 ORTHO05D007154 3.3e-44 183.3 286 41.3
CDE05G0194 Ceratophyllum demersum HOM05D005493 ORTHO05D007154 3.3e-44 183.3 283 40.6
MSTRG.7128 Avicennia marina HOM05D005493 ORTHO05D007154 4.3e-44 183.0 246 43.9
CANSAT56G4202 Cannabis sativa HOM05D005493 ORTHO05D007154 7.3e-44 182.2 304 40.8
SMO358G0363 Selaginella moellendorffii HOM05D005493 ORTHO05D007154 7.3e-44 182.2 261 42.5
AL8G10270 Arabidopsis lyrata HOM05D005493 ORTHO05D007154 9.5e-44 181.8 185 50.3
A09p23180 Brassica napus HOM05D005493 ORTHO05D007154 9.5e-44 181.8 293 40.3
BraA09t37921Z Brassica rapa HOM05D005493 ORTHO05D007154 9.5e-44 181.8 293 40.3
AT5G47680 Arabidopsis thaliana HOM05D005493 ORTHO05D007154 1.2e-43 181.4 217 44.7
BolC9t55855H Brassica oleracea HOM05D005493 ORTHO05D007154 1.2e-43 181.4 286 40.9
Prupe.4G003700 Prunus persica HOM05D005493 ORTHO05D007154 1.2e-43 181.4 216 45.8
QL05p067786 Quercus lobata HOM05D005493 ORTHO05D007154 1.2e-43 181.4 318 39.6
Sc17g0007990 Simmondsia chinensis HOM05D005493 ORTHO05D007154 3.6e-43 179.9 269 42.0
Thhalv10000943m.g Eutrema salsugineum HOM05D005493 ORTHO05D007154 5.2e-42 176.0 325 37.8
Sabra06G0004100 Salix brachista HOM05D005493 ORTHO05D007154 1.5e-41 174.5 242 43.0
Rhsim13G0140600 Rhododendron simsii HOM05D005493 ORTHO05D007154 3.4e-41 173.3 303 38.9
HPP92_027483 Vanilla planifolia HOM05D005493 ORTHO05D007154 4.4e-41 172.9 227 42.3
MD10G1339200 Malus domestica HOM05D005493 ORTHO05D007154 1.7e-40 171.0 317 38.5
vmacro03608 Vaccinium macrocarpon HOM05D005493 ORTHO05D007154 1.7e-40 171.0 384 34.4
Ciclev10015889m.g Citrus clementina HOM05D005493 ORTHO05D007154 2.2e-40 170.6 319 37.0
BcaC06g34232 Brassica carinata HOM05D005493 ORTHO05D007154 1.9e-39 167.5 279 39.4
AUR62034063 Chenopodium quinoa HOM05D005493 ORTHO05D007154 1.1e-34 151.8 216 41.2
BolC7t43675H Brassica oleracea HOM05D005493 ORTHO05D007154 2.6e-33 147.1 280 37.5
Cre06.g278500 Chlamydomonas reinhardtii HOM05D005493 ORTHO05D007154 2.4e-31 140.6 308 33.8
GSVIVG01002894001 Vitis vinifera HOM05D005493 ORTHO05D007154 3.5e-30 136.7 159 46.5
SHI12358 Sapria himalayana HOM05D005493 ORTHO05D007154 2.1e-27 127.5 117 50.4
Os02g0725600 Oryza sativa ssp. japonica HOM05D005493 ORTHO05D007154 4.0e-26 123.2 154 45.5
MCO13G503 Micromonas commoda HOM05D005493 ORTHO05D007154 1.5e-25 121.3 177 39.0
Sabra16G0010400 Salix brachista HOM05D005493 ORTHO05D007154 2.4e-23 114.0 314 32.8
CBR_g1099 Chara braunii HOM05D000019 ORTHO05D000002 1.3e-21 108.2 285 30.5
PRCOL_00000725 Prasinoderma coloniale HOM05D005493 ORTHO05D007154 5.6e-20 102.8 209 31.1
Zm00001eb070580 Zea mays HOM05D005493 ORTHO05D007154 6.2e-19 99.4 90 55.6
Zm00001eb264500 Zea mays HOM05D005493 ORTHO05D007154 6.2e-19 99.4 92 54.3
Actinidia11906 Actinidia chinensis HOM05D005493 ORTHO05D007154 7.8e-14 82.4 147 37.4
Cre02.g119350 Chlamydomonas reinhardtii HOM05D005493 ORTHO05D007154 7.3e-12 75.9 233 27.0
Cre10.g456851 Chlamydomonas reinhardtii HOM05D005493 ORTHO05D007154 1.6e-11 74.7 226 29.6
Cfa025804 Carpinus fangiana HOM05D005493 ORTHO05D007154 2.0e-09 67.8 105 37.1
Zm00001eb168490 Zea mays HOM05D000087 ORTHO05D011931 9.9e-09 65.5 65 52.3
SHI50428 Sapria himalayana HOM05D005493 ORTHO05D007154 4.2e-07 60.1 152 32.9
unitig_37.g12178 Utricularia gibba HOM05D005493 ORTHO05D007154 1.6e-06 58.2 154 31.2
MCO11G471 Micromonas commoda HOM05D050729 ORTHO05D049153 4.6e-06 56.6 96 31.2


User provided reference genes

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