Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c2_10230 Physcomitrium patens HOM05D003674 ORTHO05D004226 0.0e+00 1502.3 765 100.0
Pp3c1_28370 Physcomitrium patens HOM05D003674 ORTHO05D004226 0.0e+00 1256.1 735 86.5
Pp3c14_20770 Physcomitrium patens HOM05D003674 ORTHO05D004226 0.0e+00 1227.6 765 82.0
Pp3c18_10190 Physcomitrium patens HOM05D003674 ORTHO05D004226 1.7e-268 929.5 745 64.7
Pp3c21_11410 Physcomitrium patens HOM05D003674 ORTHO05D004226 6.4e-268 927.5 740 64.7
Pp3c19_18680 Physcomitrium patens HOM05D003674 ORTHO05D004226 5.8e-229 798.1 636 64.3
Mapoly0062s0036 Marchantia polymorpha HOM05D003674 ORTHO05D004226 1.4e-185 654.1 737 48.8
Pp3c3_16950 Physcomitrium patens HOM05D003674 ORTHO05D004226 3.3e-163 579.7 615 51.4
Mapoly0050s0061 Marchantia polymorpha HOM05D003674 ORTHO05D004226 6.6e-156 555.4 694 45.1
Pp3c15_12230 Physcomitrium patens HOM05D003674 ORTHO05D004226 9.4e-94 349.0 665 33.7
Pp3c1_6270 Physcomitrium patens HOM05D003674 ORTHO05D004226 4.4e-91 340.1 659 32.2
Pp3c1_6272 Physcomitrium patens HOM05D003674 ORTHO05D004226 4.4e-91 340.1 659 32.2
Mapoly0002s0274 Marchantia polymorpha HOM05D003674 ORTHO05D004226 2.2e-87 327.8 705 32.2
RcHm_v2.0_Chr2g0126551 Rosa chinensis HOM05D003674 ORTHO05D004226 3.8e-87 327.0 688 32.1
MD17G1240200 Malus domestica HOM05D003674 ORTHO05D004226 1.9e-86 324.7 726 32.0
AagrBONN_evm.TU.Sc2ySwM_344.5080 Anthoceros agrestis HOM05D003674 ORTHO05D004226 1.6e-85 321.6 672 32.1
Os01g0678500 Oryza sativa ssp. japonica HOM05D003674 ORTHO05D004226 8.0e-85 319.3 646 32.4
RcHm_v2.0_Chr2g0126531 Rosa chinensis HOM05D003674 ORTHO05D004226 1.4e-84 318.5 653 32.2
Sc12g0003090 Simmondsia chinensis HOM05D003674 ORTHO05D004226 2.3e-84 317.8 702 31.6
Solyc07g053970.3 Solanum lycopersicum HOM05D003674 ORTHO05D004226 2.3e-84 317.8 653 32.9
Peaxi162Scf00132g00119 Petunia axillaris HOM05D003674 ORTHO05D004226 3.0e-84 317.4 689 33.2
THA.LOC104826033 Tarenaya hassleriana HOM05D003674 ORTHO05D004226 1.2e-83 315.5 677 31.5
FvH4_6g26210 Fragaria vesca HOM05D003674 ORTHO05D004226 2.0e-83 314.7 653 31.7
MD09G1247300 Malus domestica HOM05D003674 ORTHO05D004226 2.0e-83 314.7 652 31.6
CiPaw.03G177300 Carya illinoinensis HOM05D003674 ORTHO05D004226 2.6e-83 314.3 676 31.8
Sopen07g027960 Solanum pennellii HOM05D003674 ORTHO05D004343 4.4e-83 313.5 673 32.1
Actinidia11076 Actinidia chinensis HOM05D003674 ORTHO05D004226 7.5e-83 312.8 688 32.0
TAR624G0345 Trochodendron aralioides HOM05D003674 ORTHO05D004226 7.5e-83 312.8 655 32.7
EL10Ac9g20767 Beta vulgaris HOM05D003674 ORTHO05D004226 3.7e-82 310.5 649 31.1
Actinidia11032 Actinidia chinensis HOM05D003674 ORTHO05D004226 1.8e-81 308.1 652 31.4
Aqoxy4G00814 Aquilegia oxysepala HOM05D003674 ORTHO05D004226 3.1e-81 307.4 663 33.0
CAN.G248.4 Capsicum annuum HOM05D003674 ORTHO05D004226 7.0e-81 306.2 678 32.0
THA.LOC104801172 Tarenaya hassleriana HOM05D003674 ORTHO05D004226 3.5e-80 303.9 727 30.4
HanXRQChr10g0297111 Helianthus annuus HOM05D003674 ORTHO05D004226 4.5e-80 303.5 676 31.8
CSS0035927 Camellia sinensis var. sinensis HOM05D003674 ORTHO05D004226 1.0e-79 302.4 652 31.0
Dinv23635 Davidia involucrata HOM05D003674 ORTHO05D004226 2.2e-79 301.2 661 32.1
BcaB01g02542 Brassica carinata HOM05D003674 ORTHO05D004226 5.0e-79 300.1 670 31.2
HPP92_008135 Vanilla planifolia HOM05D003674 ORTHO05D004226 5.0e-79 300.1 649 32.0
AL6G49310 Arabidopsis lyrata HOM05D003674 ORTHO05D004226 6.5e-79 299.7 678 31.7
BraA09t35927Z Brassica rapa HOM05D003674 ORTHO05D004226 8.5e-79 299.3 681 31.4
Sp6g03570 Schrenkiella parvula HOM05D003674 ORTHO05D004226 1.1e-78 298.9 652 31.1
Lsat_1_v5_gn_4_66721 Lactuca sativa HOM05D003674 ORTHO05D004226 1.9e-78 298.1 652 31.0
Cfa014617 Carpinus fangiana HOM05D003674 ORTHO05D004226 2.5e-78 297.7 680 30.1
arahy.Tifrunner.gnm1.ann1.1TZ75T Arachis hypogaea HOM05D003674 ORTHO05D004226 3.2e-78 297.4 677 30.0
Glyma.12G204400 Glycine max HOM05D003674 ORTHO05D004226 3.2e-78 297.4 654 30.9
BolC9t53217H Brassica oleracea HOM05D003674 ORTHO05D004226 4.2e-78 297.0 674 31.3
ECA234G3736 Erigeron canadensis HOM05D003674 ORTHO05D004226 4.2e-78 297.0 652 31.3
PSO832G0572 Papaver somniferum HOM05D003674 ORTHO05D004226 4.2e-78 297.0 656 31.4
COL.COLO4_30194 Corchorus olitorius HOM05D003674 ORTHO05D004226 5.5e-78 296.6 653 31.5
BcaC04g23961 Brassica carinata HOM05D003674 ORTHO05D004226 7.2e-78 296.2 674 31.3
Ciclev10014388m.g Citrus clementina HOM05D003674 ORTHO05D004226 9.4e-78 295.8 689 29.9
AT4G03560 Arabidopsis thaliana HOM05D003674 ORTHO05D004226 1.2e-77 295.4 675 31.7
Phvul.004G108300 Phaseolus vulgaris HOM05D003674 ORTHO05D004226 1.2e-77 295.4 654 30.6
VMungo0464G1662 Vigna mungo HOM05D003674 ORTHO05D004226 1.2e-77 295.4 654 30.0
Duzib132G0159 Durio zibethinus HOM05D003674 ORTHO05D004226 1.6e-77 295.0 675 31.6
Thecc.02G180000 Theobroma cacao HOM05D003674 ORTHO05D004226 2.1e-77 294.7 652 31.4
TPR.G6424 Trifolium pratense HOM05D003674 ORTHO05D004226 2.1e-77 294.7 657 32.0
PSO210G7128 Papaver somniferum HOM05D003674 ORTHO05D004226 2.7e-77 294.3 679 30.9
BcaC01g06668 Brassica carinata HOM05D003674 ORTHO05D004226 4.7e-77 293.5 676 30.9
Carub.0006s3351 Capsella rubella HOM05D003674 ORTHO05D004226 4.7e-77 293.5 674 31.2
Glyma.13G296900 Glycine max HOM05D003674 ORTHO05D004226 4.7e-77 293.5 654 30.4
A03p30360 Brassica napus HOM05D003674 ORTHO05D004226 1.0e-76 292.4 670 30.7
Cc05_g07170 Coffea canephora HOM05D003674 ORTHO05D004226 1.4e-76 292.0 681 30.8
Lj3g0012901 Lotus japonicus HOM05D003674 ORTHO05D004226 1.4e-76 292.0 654 30.6
Lalb_Chr22g0356561 Lupinus albus HOM05D003674 ORTHO05D004226 1.4e-76 292.0 677 29.8
CARHR251990 Cardamine hirsuta HOM05D003674 ORTHO05D004226 1.8e-76 291.6 675 31.7
BolC3t15980H Brassica oleracea HOM05D003674 ORTHO05D004226 3.0e-76 290.8 676 30.9
Psat5g272320 Pisum sativum HOM05D003674 ORTHO05D004226 4.0e-76 290.4 656 30.5
Potri.013G131100 Populus trichocarpa HOM05D003674 ORTHO05D004226 5.2e-76 290.0 683 29.7
TWI75G1008 Tripterygium wilfordii HOM05D003674 ORTHO05D004226 8.8e-76 289.3 629 32.6
BcaB01g01906 Brassica carinata HOM05D003674 ORTHO05D004226 1.2e-75 288.9 674 30.9
BraA03t12218Z Brassica rapa HOM05D003674 ORTHO05D004226 1.2e-75 288.9 677 30.6
DCAR_021245 Daucus carota HOM05D003674 ORTHO05D004226 1.5e-75 288.5 689 30.3
Medtr2g090380 Medicago truncatula HOM05D003674 ORTHO05D004226 2.0e-75 288.1 657 30.1
HanXRQChr06g0179591 Helianthus annuus HOM05D003674 ORTHO05D004226 7.5e-75 286.2 647 31.1
GSVIVG01020549001 Vitis vinifera HOM05D003674 ORTHO05D004226 7.5e-75 286.2 661 30.9
arahy.Tifrunner.gnm1.ann1.1DM7TY Arachis hypogaea HOM05D003674 ORTHO05D004226 2.2e-74 284.6 706 29.0
SalBow1G0286 Salvia bowleyana HOM05D003674 ORTHO05D004226 2.2e-74 284.6 670 30.1
unitig_749.g13960 Utricularia gibba HOM05D003674 ORTHO05D004226 3.7e-74 283.9 689 30.0
DCAR_013010 Daucus carota HOM05D003674 ORTHO05D004226 4.8e-74 283.5 691 30.2
C03p36660 Brassica napus HOM05D003674 ORTHO05D004226 8.3e-74 282.7 675 30.7
Oeu017490.2 Olea europaea HOM05D003674 ORTHO05D004226 3.1e-73 280.8 626 31.9
QL08p038784 Quercus lobata HOM05D003674 ORTHO05D004226 7.0e-73 279.6 708 29.5
SalBow1G3138 Salvia bowleyana HOM05D003674 ORTHO05D004226 2.7e-72 277.7 682 29.6
Gohir.A03G156500 Gossypium hirsutum HOM05D003674 ORTHO05D004226 3.5e-72 277.3 652 30.2
Gorai.005G201400 Gossypium raimondii HOM05D003674 ORTHO05D004226 4.5e-72 276.9 652 30.2
QL08p038841 Quercus lobata HOM05D003674 ORTHO05D004226 4.5e-72 276.9 723 29.0
PGR142G3148 Punica granatum HOM05D003674 ORTHO05D004226 7.7e-72 276.2 677 30.9
MELO3C018734.2 Cucumis melo HOM05D003674 ORTHO05D004226 1.3e-71 275.4 671 29.8
Prupe.3G138600 Prunus persica HOM05D003674 ORTHO05D004226 1.3e-71 275.4 669 29.1
CsaV3_7G004450 Cucumis sativus L. HOM05D003674 ORTHO05D004226 2.2e-71 274.6 653 30.2
DCAR_013011 Daucus carota HOM05D003674 ORTHO05D004226 2.9e-71 274.2 671 30.8
Eucgr.K01030 Eucalyptus grandis HOM05D003674 ORTHO05D004226 8.5e-71 272.7 669 29.7
Nitab4.5_0004344g0030 Nicotiana tabacum HOM05D003674 ORTHO05D004226 1.1e-70 272.3 653 31.1
Aa31LG5G2940 Aethionema arabicum HOM05D003674 ORTHO05D004226 1.9e-70 271.6 676 30.6
Sed0011332 Sechium edule HOM05D003674 ORTHO05D004226 1.9e-70 271.6 665 29.5
PSO675G3793 Papaver somniferum HOM05D003674 ORTHO05D004226 2.5e-70 271.2 682 29.2
Thhalv10029480m.g Eutrema salsugineum HOM05D003674 ORTHO05D004226 7.2e-70 269.6 673 29.7
Zm00001eb360320 Zea mays HOM05D003674 ORTHO05D004226 2.1e-69 268.1 521 33.4
MBI06_g04180_MAGBIO Magnolia biondii HOM05D003674 ORTHO05D004226 2.8e-69 267.7 576 32.8
Eucgr.K01031 Eucalyptus grandis HOM05D003674 ORTHO05D004226 8.0e-69 266.2 677 30.0
Eucgr.K01029 Eucalyptus grandis HOM05D003674 ORTHO05D004226 1.8e-68 265.0 678 29.1
CSS0005418 Camellia sinensis var. sinensis HOM05D003674 ORTHO05D004226 4.4e-67 260.4 650 30.0
Rhsim06G0142000 Rhododendron simsii HOM05D003674 ORTHO05D004226 1.3e-66 258.8 571 31.2
A09p02830 Brassica napus HOM05D000230 ORTHO05D000176 1.7e-66 258.5 674 29.8
Cpa.g.sc848.1 Carica papaya HOM05D003674 ORTHO05D004226 2.8e-66 257.7 574 30.5
SGA_v2.0_scaffold322G48614 Striga asiatica HOM05D003674 ORTHO05D004226 7.0e-65 253.1 691 29.7
CSS0020583 Camellia sinensis var. sinensis HOM05D003674 ORTHO05D004226 9.2e-65 252.7 651 28.9
DCAR_019181 Daucus carota HOM05D003674 ORTHO05D004226 2.0e-64 251.5 582 31.8
Hund01095 Selenicereus undatus HOM05D003674 ORTHO05D004226 2.3e-63 248.1 628 29.6
Nitab4.5_0000512g0020 Nicotiana tabacum HOM05D003674 ORTHO05D004226 3.8e-63 247.3 601 31.9
MSTRG.14342 Avicennia marina HOM05D003674 ORTHO05D004226 3.6e-61 240.7 555 31.4
FAN09G3196 Fragaria x ananassa HOM05D000230 ORTHO05D004226 3.6e-61 240.7 544 30.3
Manes.13G146400 Manihot esculenta HOM05D003674 ORTHO05D004226 1.0e-60 239.2 490 33.7
Haze_13165 Corylus avellana HOM05D003674 ORTHO05D004226 5.2e-60 236.9 583 29.2
QL08p038913 Quercus lobata HOM05D003674 ORTHO05D004226 3.4e-59 234.2 796 26.3
Ah.01g004260 Amaranthus hybridus HOM05D003674 ORTHO05D004226 1.3e-55 222.2 671 26.1
CAN.G1472.4 Capsicum annuum HOM05D003674 ORTHO05D004226 1.3e-55 222.2 528 30.5
FAN05G0320 Fragaria x ananassa HOM05D000230 ORTHO05D000176 3.9e-55 220.7 652 27.3
CiPaw.04G126100 Carya illinoinensis HOM05D003674 ORTHO05D004226 5.0e-55 220.3 489 31.7
ClCG07G002890 Citrullus lanatus HOM05D003674 ORTHO05D004226 8.6e-55 219.5 678 27.9
Oeu017491.1 Olea europaea HOM05D003674 ORTHO05D004226 1.1e-54 219.2 499 31.9
AUR62037356 Chenopodium quinoa HOM05D003674 ORTHO05D004226 5.6e-54 216.9 613 27.6
Migut.H01178 Erythranthe guttata HOM05D003674 ORTHO05D004226 7.3e-54 216.5 514 31.1
Sabra13G0110800 Salix brachista HOM05D003674 ORTHO05D004226 1.7e-50 205.3 508 28.1
Peaxi162Scf00132g00117 Petunia axillaris HOM05D003674 ORTHO05D004226 2.0e-48 198.4 569 28.3
Oeu058850.1 Olea europaea HOM05D003674 ORTHO05D004226 8.6e-47 193.0 419 32.9
FAN02G2237 Fragaria x ananassa HOM05D003674 ORTHO05D004226 8.1e-45 186.4 668 26.5
vmacro12305 Vaccinium macrocarpon HOM05D003674 ORTHO05D004226 8.1e-45 186.4 489 30.1
ATR0737G001 Amborella trichopoda HOM05D003674 ORTHO05D004226 4.0e-44 184.1 404 31.4
TAR624G0173 Trochodendron aralioides HOM05D003674 ORTHO05D004226 2.4e-41 174.9 342 33.0
Sabra13G0110700 Salix brachista HOM05D003674 ORTHO05D004226 1.6e-40 172.2 539 27.6
Nn1g06551 Nelumbo nucifera HOM05D003674 ORTHO05D004226 2.1e-37 161.8 334 34.4
AUR62042592 Chenopodium quinoa HOM05D003674 ORTHO05D004226 3.4e-35 154.5 610 25.7
MSTRG.14332 Avicennia marina HOM05D003674 ORTHO05D004226 4.9e-34 150.6 263 36.5
TAR624G0523 Trochodendron aralioides HOM05D003674 ORTHO05D004226 7.8e-32 143.3 311 31.8
Hma1.2p1_2586F.1_g324940 Hydrangea macrophylla HOM05D003674 ORTHO05D004226 8.6e-31 139.8 211 37.4
Hma1.2p1_1937F.1_g308270 Hydrangea macrophylla HOM05D003674 ORTHO05D004226 2.5e-30 138.3 307 30.6
Gohir.D02G179632 Gossypium hirsutum HOM05D003674 ORTHO05D004226 1.2e-29 136.0 401 26.7
CBR_g54426 Chara braunii HOM05D003674 ORTHO05D004226 1.1e-28 132.9 450 26.2
Gohir.D02G179566 Gossypium hirsutum HOM05D003674 ORTHO05D004226 6.4e-26 123.6 223 34.1
Nn1g06549 Nelumbo nucifera HOM05D003674 ORTHO05D004226 2.8e-21 108.2 151 39.1
ATR0737G184 Amborella trichopoda HOM05D003674 ORTHO05D004226 5.3e-20 104.0 142 41.5
CDE06G1319 Ceratophyllum demersum HOM05D003674 ORTHO05D004226 1.2e-19 102.8 252 28.6
SHI10407 Sapria himalayana HOM05D003674 ORTHO05D004226 2.0e-19 102.1 247 27.9
Ca_01498_v3 Cicer arietinum L. HOM05D003674 ORTHO05D004226 1.3e-18 99.4 232 30.2
CiPaw.04G126200 Carya illinoinensis HOM05D003674 ORTHO05D004226 2.4e-17 95.1 142 35.9
MSTRG.14334 Avicennia marina HOM05D003674 ORTHO05D004226 9.3e-17 93.2 189 30.7
Hma1.2p1_1836F.1_g304720 Hydrangea macrophylla HOM05D003674 ORTHO05D004226 3.9e-15 87.8 120 38.3
Lsat_1_v5_gn_4_64281 Lactuca sativa HOM05D003674 ORTHO05D004226 1.5e-14 85.9 145 35.9
CDE08G1051 Ceratophyllum demersum HOM05D003674 ORTHO05D004226 6.2e-13 80.5 141 32.6
CBR_g41145 Chara braunii HOM05D003674 ORTHO05D004226 8.1e-13 80.1 159 26.4
Nn1g06550 Nelumbo nucifera HOM05D003674 ORTHO05D004226 9.9e-11 73.2 140 37.1
MSTRG.14339 Avicennia marina HOM05D003674 ORTHO05D004226 2.2e-10 72.0 123 34.1
MSTRG.14337 Avicennia marina HOM05D003674 ORTHO05D004226 2.4e-09 68.6 75 44.0
SEGI_23599 Sequoiadendron giganteum HOM05D003674 ORTHO05D004226 1.2e-08 66.2 81 43.2
vmacro12304 Vaccinium macrocarpon HOM05D003674 ORTHO05D004226 1.6e-08 65.9 172 27.3
Ca_01497_v3 Cicer arietinum L. HOM05D003674 ORTHO05D004226 2.7e-08 65.1 139 34.5
Oeu010988.1 Olea europaea HOM05D003674 ORTHO05D004226 3.5e-08 64.7 125 34.4
Nitab4.5_0012835g0020 Nicotiana tabacum HOM05D003674 ORTHO05D004226 1.0e-07 63.2 119 31.9
SEGI_19203 Sequoiadendron giganteum HOM05D003674 ORTHO05D004226 8.7e-07 60.1 100 35.0
Hma1.2p1_1145F.1_g261410 Hydrangea macrophylla HOM05D003674 ORTHO05D004226 1.1e-06 59.7 92 34.8
MCO14G402 Micromonas commoda HOM05D009333 ORTHO05D011489 1.1e-06 59.7 241 24.9
MCO03G344 Micromonas commoda HOM05D009333 ORTHO05D011489 1.9e-06 58.9 209 26.8


User provided reference genes

Program Settings