Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c27_6210 Physcomitrium patens HOM05D005521 ORTHO05D008962 0.0e+00 7798.4 3916 100.0
Pp3c6_28550 Physcomitrium patens HOM05D005521 ORTHO05D008962 0.0e+00 5747.5 3832 74.1
Mapoly0032s0050 Marchantia polymorpha HOM05D005521 ORTHO05D008962 0.0e+00 5135.5 3915 66.2
CBR_g5736 Chara braunii HOM05D005521 ORTHO05D008962 0.0e+00 4664.8 3964 58.8
Cre09.g392282 Chlamydomonas reinhardtii HOM05D005521 ORTHO05D008962 0.0e+00 4315.8 4017 55.5
PRCOL_00006358 Prasinoderma coloniale HOM05D005521 ORTHO05D008962 0.0e+00 4147.8 3940 54.1
MCO02G369 Micromonas commoda HOM05D005521 ORTHO05D008962 0.0e+00 3972.5 3836 53.6
SMO011G0045 Selaginella moellendorffii HOM05D005521 ORTHO05D008962 0.0e+00 3684.4 2775 66.5
SMO364G0392 Selaginella moellendorffii HOM05D005521 ORTHO05D008962 0.0e+00 2997.6 3742 43.6
Cre05.g244250 Chlamydomonas reinhardtii HOM05D005521 ORTHO05D008962 0.0e+00 2994.1 4092 42.3
PRCOL_00006702 Prasinoderma coloniale HOM05D005521 ORTHO05D008962 0.0e+00 2991.8 3987 42.3
AagrBONN_evm.TU.Sc2ySwM_117.2769 Anthoceros agrestis HOM05D005521 ORTHO05D008962 0.0e+00 2968.3 4049 41.8
Cre02.g141606 Chlamydomonas reinhardtii HOM05D005521 ORTHO05D008962 0.0e+00 2958.7 3726 43.3
Mapoly0022s0169 Marchantia polymorpha HOM05D005521 ORTHO05D008962 0.0e+00 2946.8 3608 44.5
Mapoly0043s0089 Marchantia polymorpha HOM05D005521 ORTHO05D008962 0.0e+00 2945.6 3658 44.0
MCO10G182 Micromonas commoda HOM05D005521 ORTHO05D008962 0.0e+00 2914.0 3480 44.6
MCO12G056 Micromonas commoda HOM05D005521 ORTHO05D008962 0.0e+00 2882.8 3775 41.6
Pp3c12_9940 Physcomitrium patens HOM05D005521 ORTHO05D008962 0.0e+00 2877.0 3325 46.3
Mapoly0035s0021 Marchantia polymorpha HOM05D005521 ORTHO05D008962 0.0e+00 2870.1 3793 42.1
SMO116G0311 Selaginella moellendorffii HOM05D005521 ORTHO05D008962 0.0e+00 2843.5 3261 46.6
Cre16.g685450 Chlamydomonas reinhardtii HOM05D005521 ORTHO05D008962 0.0e+00 2818.1 3695 42.4
MCO02G109 Micromonas commoda HOM05D005521 ORTHO05D008962 0.0e+00 2778.8 3627 42.5
Pp3c23_17280 Physcomitrium patens HOM05D005521 ORTHO05D008962 0.0e+00 2775.3 4049 39.6
Cre02.g107050 Chlamydomonas reinhardtii HOM05D005521 ORTHO05D008962 0.0e+00 2753.8 3373 44.2
PRCOL_00001499 Prasinoderma coloniale HOM05D005521 ORTHO05D008962 0.0e+00 2743.8 3692 41.3
PRCOL_00006732 Prasinoderma coloniale HOM05D005521 ORTHO05D008962 0.0e+00 2734.5 3551 42.4
Mapoly0015s0073 Marchantia polymorpha HOM05D005521 ORTHO05D008962 0.0e+00 2733.4 3426 43.2
Cre14.g627576 Chlamydomonas reinhardtii HOM05D005521 ORTHO05D008962 0.0e+00 2622.8 3476 42.9
PRCOL_00006448 Prasinoderma coloniale HOM05D005521 ORTHO05D008962 0.0e+00 2610.1 3298 43.0
Cre12.g555950 Chlamydomonas reinhardtii HOM05D005521 ORTHO05D008962 0.0e+00 2603.2 3621 40.3
Mapoly0083s0015 Marchantia polymorpha HOM05D005521 ORTHO05D008962 0.0e+00 2593.1 3426 42.0
MCO09G678 Micromonas commoda HOM05D005521 ORTHO05D008962 0.0e+00 2571.6 3662 40.1
SMO117G0259 Selaginella moellendorffii HOM05D005521 ORTHO05D008962 0.0e+00 2553.9 3207 43.8
Pp3c7_8280 Physcomitrium patens HOM05D005521 ORTHO05D008962 0.0e+00 2535.0 3297 42.9
AagrBONN_evm.TU.Sc2ySwM_362.572 Anthoceros agrestis HOM05D005521 ORTHO05D008962 0.0e+00 2469.9 1804 67.2
Cre02.g107350 Chlamydomonas reinhardtii HOM05D005521 ORTHO05D008962 0.0e+00 2449.1 3812 38.4
Cre14.g624950 Chlamydomonas reinhardtii HOM05D005521 ORTHO05D008962 0.0e+00 2354.7 3784 37.3
CBR_g39582 Chara braunii HOM05D005521 ORTHO05D008962 0.0e+00 2354.3 3206 41.1
PRCOL_00002002 Prasinoderma coloniale HOM05D005521 ORTHO05D008962 0.0e+00 2350.5 3555 39.0
SMO332G0013 Selaginella moellendorffii HOM05D005521 ORTHO05D008962 0.0e+00 2294.6 3249 39.5
MCO12G412 Micromonas commoda HOM05D005521 ORTHO05D008962 0.0e+00 2285.4 3497 38.1
Pp3c20_6270 Physcomitrium patens HOM05D005521 ORTHO05D008962 0.0e+00 2231.4 2775 44.0
Mapoly0004s0117 Marchantia polymorpha HOM05D005521 ORTHO05D008962 0.0e+00 2203.3 3483 37.3
AagrBONN_evm.TU.Sc2ySwM_344.5243 Anthoceros agrestis HOM05D005521 ORTHO05D008962 0.0e+00 2184.1 3013 39.8
Pp3c17_1970 Physcomitrium patens HOM05D005521 ORTHO05D008962 0.0e+00 2179.8 3275 38.2
AagrBONN_evm.TU.Sc2ySwM_228.4355 Anthoceros agrestis HOM05D005521 ORTHO05D008962 0.0e+00 2133.2 2592 45.2
AagrBONN_evm.TU.Sc2ySwM_362.573 Anthoceros agrestis HOM05D005521 ORTHO05D008962 0.0e+00 2077.8 1731 60.8
SMO367G1221 Selaginella moellendorffii HOM05D005521 ORTHO05D008962 0.0e+00 2064.7 2437 44.8
SMO352G0080 Selaginella moellendorffii HOM05D005521 ORTHO05D008962 0.0e+00 2016.1 3253 36.5
Cre12.g484250 Chlamydomonas reinhardtii HOM05D005521 ORTHO05D008962 0.0e+00 2003.4 3348 35.9
AagrBONN_evm.TU.Sc2ySwM_228.3514 Anthoceros agrestis HOM05D005521 ORTHO05D008962 0.0e+00 1991.1 3478 34.7
PRCOL_00003512 Prasinoderma coloniale HOM05D005521 ORTHO05D008962 0.0e+00 1983.4 3231 35.8
Pp3c22_18230 Physcomitrium patens HOM05D005521 ORTHO05D008962 0.0e+00 1973.7 3226 35.9
Pp3c22_18240 Physcomitrium patens HOM05D005521 ORTHO05D008962 0.0e+00 1973.7 3226 35.9
MCO11G302 Micromonas commoda HOM05D005521 ORTHO05D008962 0.0e+00 1965.3 3262 35.8
Cre06.g265950 Chlamydomonas reinhardtii HOM05D005521 ORTHO05D008962 0.0e+00 1913.3 4449 30.2
Cre09.g403800 Chlamydomonas reinhardtii HOM05D005521 ORTHO05D008962 0.0e+00 1860.1 3328 34.2
MCO13G141 Micromonas commoda HOM05D005521 ORTHO05D008962 0.0e+00 1842.0 3498 33.0
PRCOL_00005693 Prasinoderma coloniale HOM05D005521 ORTHO05D008962 0.0e+00 1819.3 3334 33.6
PRCOL_00005933 Prasinoderma coloniale HOM05D005521 ORTHO05D008962 0.0e+00 1782.3 3323 32.9
MCO08G072 Micromonas commoda HOM05D005521 ORTHO05D008962 0.0e+00 1778.1 3730 31.6
Mapoly0064s0039 Marchantia polymorpha HOM05D005521 ORTHO05D008962 0.0e+00 1769.6 2828 36.8
CBR_g23890 Chara braunii HOM05D005521 ORTHO05D008962 0.0e+00 1766.1 3479 32.2
Cre03.g145127 Chlamydomonas reinhardtii HOM05D005521 ORTHO05D008962 0.0e+00 1664.4 3457 31.3
PRCOL_00005761 Prasinoderma coloniale HOM05D005521 ORTHO05D008962 0.0e+00 1664.4 3363 32.1
MCO14G480 Micromonas commoda HOM05D005521 ORTHO05D008962 0.0e+00 1623.6 3369 31.6
AagrBONN_evm.TU.Sc2ySwM_117.2559 Anthoceros agrestis HOM05D005521 ORTHO05D008962 0.0e+00 1604.3 1977 42.9
Cre11.g476050 Chlamydomonas reinhardtii HOM05D005521 ORTHO05D008962 0.0e+00 1486.9 2656 35.2
AagrBONN_evm.TU.Sc2ySwM_117.525 Anthoceros agrestis HOM05D005521 ORTHO05D008962 0.0e+00 1380.5 1497 49.6
Mapoly0070s0015 Marchantia polymorpha HOM05D005521 ORTHO05D008962 0.0e+00 1229.9 3718 26.1
MCO14G126 Micromonas commoda HOM05D005521 ORTHO05D017330 0.0e+00 1184.9 3229 27.7
Cfa025692 Carpinus fangiana HOM05D005521 ORTHO05D008962 0.0e+00 1137.1 3006 27.8
Cre06.g250300 Chlamydomonas reinhardtii HOM05D005521 ORTHO05D017330 0.0e+00 1130.9 3228 27.5
CBR_g34178 Chara braunii HOM05D000409 ORTHO05D008962 0.0e+00 1083.6 1241 45.4
Mapoly0108s0011 Marchantia polymorpha HOM05D005521 ORTHO05D017330 2.0e-309 1067.8 3563 25.7
PRCOL_00001970 Prasinoderma coloniale HOM05D005521 ORTHO05D017330 1.4e-305 1055.0 3136 26.4
CBR_g12673 Chara braunii HOM05D000019 ORTHO05D000002 3.0e-305 1053.9 2996 26.0
AagrBONN_evm.TU.Sc2ySwM_117.524 Anthoceros agrestis HOM05D005521 ORTHO05D008962 3.1e-294 1017.3 1239 44.4
Cre06.g297850 Chlamydomonas reinhardtii HOM05D005521 ORTHO05D008962 6.8e-289 999.6 3258 24.6
CBR_g62 Chara braunii HOM05D005521 ORTHO05D008962 1.2e-277 962.2 1317 40.0
CBR_g34182 Chara braunii HOM05D000019 ORTHO05D008962 3.6e-266 924.1 843 56.2
CBR_g53503 Chara braunii HOM05D005521 ORTHO05D008962 3.6e-266 924.1 978 48.6
CBR_g45840 Chara braunii HOM05D000019 ORTHO05D008962 5.6e-259 900.2 1652 33.5
CBR_g57824 Chara braunii HOM05D005521 ORTHO05D008962 1.2e-221 776.2 3386 23.9
SMO367G0359 Selaginella moellendorffii HOM05D005521 ORTHO05D008962 3.0e-220 771.5 815 49.8
PRCOL_00001999 Prasinoderma coloniale HOM05D005521 ORTHO05D008962 9.0e-217 760.0 3086 25.1
CBR_g45837 Chara braunii HOM05D005521 ORTHO05D008962 2.9e-215 755.0 1235 36.2
CBR_g64 Chara braunii HOM05D005521 ORTHO05D008962 8.5e-215 753.4 1025 41.4
CBR_g26004 Chara braunii HOM05D005521 ORTHO05D008962 1.0e-207 729.9 1010 40.2
CBR_g22156 Chara braunii HOM05D005521 ORTHO05D008962 3.1e-201 708.4 868 43.0
CBR_g4417 Chara braunii HOM05D005521 ORTHO05D008962 4.4e-187 661.4 2186 26.3
Pp3c20_6280 Physcomitrium patens HOM05D005521 ORTHO05D008962 1.6e-181 642.9 691 47.2
AagrBONN_evm.TU.Sc2ySwM_117.2560 Anthoceros agrestis HOM05D005521 ORTHO05D008962 3.3e-174 618.6 1114 35.5
AagrBONN_evm.TU.Sc2ySwM_344.1203 Anthoceros agrestis HOM05D005521 ORTHO05D008962 8.0e-165 587.4 1335 29.2
CBR_g57822 Chara braunii HOM05D005521 ORTHO05D008962 7.5e-163 580.9 888 37.3
Pp3c22_18130 Physcomitrium patens HOM05D005521 ORTHO05D000001 1.0e-87 331.3 688 30.5
CBR_g31470 Chara braunii HOM05D000019 ORTHO05D000353 1.7e-82 313.9 190 80.0
CBR_g51641 Chara braunii HOM05D005521 ORTHO05D008962 2.6e-78 300.1 468 35.9
CBR_g31015 Chara braunii HOM05D005521 ORTHO05D000002 2.2e-77 297.0 470 37.4
AagrBONN_evm.TU.Sc2ySwM_344.4755 Anthoceros agrestis HOM05D005521 ORTHO05D008962 3.7e-77 296.2 447 42.5
CBR_g52364 Chara braunii HOM05D000019 ORTHO05D000002 4.7e-72 279.3 562 30.1
CBR_g38121 Chara braunii HOM05D005521 ORTHO05D017330 8.8e-71 275.0 1483 21.4
CBR_g34179 Chara braunii HOM05D005521 ORTHO05D008962 1.3e-69 271.2 319 43.9
AagrBONN_evm.TU.Sc2ySwM_344.4756 Anthoceros agrestis HOM05D005521 ORTHO05D008962 6.5e-66 258.8 203 65.5
CBR_g51368 Chara braunii HOM05D005521 ORTHO05D038443 4.2e-65 256.1 276 49.3
CBR_g4424 Chara braunii HOM05D000019 ORTHO05D000048 1.8e-63 250.8 618 30.7
AagrBONN_evm.TU.Sc2ySwM_344.4551 Anthoceros agrestis HOM05D005521 ORTHO05D008962 7.0e-60 238.8 286 50.3
CBR_g53520 Chara braunii HOM05D005521 ORTHO05D008962 1.2e-59 238.0 231 51.5
CBR_g52377 Chara braunii HOM05D005521 ORTHO05D008962 1.6e-56 227.6 283 45.2
AagrBONN_evm.TU.Sc2ySwM_344.4757 Anthoceros agrestis HOM05D005521 ORTHO05D008962 2.0e-54 220.7 152 69.7
Pp3c22_18120 Physcomitrium patens HOM05D005521 ORTHO05D008962 1.8e-52 214.2 414 31.2
AagrBONN_evm.TU.Sc2ySwM_228.4356 Anthoceros agrestis HOM05D005521 ORTHO05D038443 3.2e-52 213.4 243 45.7
CBR_g31001 Chara braunii HOM05D005521 ORTHO05D008962 6.6e-42 179.1 353 31.7
CBR_g54114 Chara braunii HOM05D000019 ORTHO05D000002 5.6e-41 176.0 583 23.2
Mapoly0032s0058 Marchantia polymorpha HOM05D005521 ORTHO05D008962 9.5e-41 175.3 162 54.9
CBR_g38132 Chara braunii HOM05D005521 ORTHO05D000014 5.2e-39 169.5 170 47.6
AagrBONN_evm.TU.Sc2ySwM_344.1202 Anthoceros agrestis HOM05D005521 ORTHO05D008962 2.7e-35 157.1 339 31.6
AagrBONN_evm.TU.Sc2ySwM_117.2296 Anthoceros agrestis HOM05D005521 ORTHO05D017330 6.6e-34 152.5 542 22.5
SMO269G0026 Selaginella moellendorffii HOM05D005521 ORTHO05D376179 1.9e-33 151.0 285 27.4
CBR_g57826 Chara braunii HOM05D005521 ORTHO05D008962 8.1e-32 145.6 352 29.8
CBR_g4416 Chara braunii HOM05D005521 ORTHO05D008962 3.7e-29 136.7 170 41.8
CBR_g65 Chara braunii HOM05D000019 ORTHO05D000048 6.4e-29 136.0 135 52.6
CBR_g49351 Chara braunii HOM05D005521 ORTHO05D008962 1.9e-28 134.4 299 27.8
AagrBONN_evm.TU.Sc2ySwM_117.2295 Anthoceros agrestis HOM05D005521 ORTHO05D017330 1.5e-25 124.8 328 27.4
CBR_g54073 Chara braunii HOM05D000019 ORTHO05D000002 3.6e-24 120.2 198 36.4
Mapoly0043s0088 Marchantia polymorpha HOM05D005521 ORTHO05D253589 1.4e-23 118.2 127 46.5
CBR_g31463 Chara braunii HOM05D008971 ORTHO05D011892 5.4e-20 106.3 99 52.5
CBR_g50869 Chara braunii HOM05D000019 ORTHO05D000002 4.3e-17 96.7 107 41.1
CBR_g51372 Chara braunii HOM05D000505 ORTHO05D001303 5.6e-17 96.3 274 24.8
AagrBONN_evm.TU.Sc2ySwM_344.4739 Anthoceros agrestis HOM05D005521 ORTHO05D008962 1.6e-16 94.7 69 65.2
AagrBONN_evm.TU.Sc2ySwM_344.4543 Anthoceros agrestis HOM05D005521 ORTHO05D008962 6.2e-16 92.8 55 80.0
CBR_g31474 Chara braunii HOM05D000019 ORTHO05D000002 4.6e-11 76.6 78 48.7
Pp3c1_36760 Physcomitrium patens HOM05D005521 ORTHO05D319434 4.6e-11 76.6 159 27.7
CBR_g25996 Chara braunii HOM05D008123 ORTHO05D000800 4.0e-07 63.5 64 48.4


User provided reference genes

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