Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c27_2320 Physcomitrium patens HOM05D004382 ORTHO05D005181 6.2e-71 270.8 147 100.0
Pp3c16_5650 Physcomitrium patens HOM05D004382 ORTHO05D005181 1.3e-55 219.9 148 81.8
Pp3c27_2340 Physcomitrium patens HOM05D004382 ORTHO05D005181 7.7e-53 210.7 148 78.4
Pp3c5_4230 Physcomitrium patens HOM05D004382 ORTHO05D005181 6.7e-49 197.6 128 82.8
Mapoly0006s0055 Marchantia polymorpha HOM05D004382 ORTHO05D005181 3.6e-34 148.7 147 59.2
AagrBONN_evm.TU.Sc2ySwM_228.2640 Anthoceros agrestis HOM05D004382 ORTHO05D005181 4.0e-33 145.2 146 59.6
CDE11G0376 Ceratophyllum demersum HOM05D004382 ORTHO05D005181 3.1e-30 135.6 109 66.1
SGA_v2.0_scaffold49G18168 Striga asiatica HOM05D004382 ORTHO05D005181 7.0e-30 134.4 131 59.5
Aqoxy1G01569 Aquilegia oxysepala HOM05D004382 ORTHO05D005181 1.6e-29 133.3 119 61.3
CiPaw.11G067100 Carya illinoinensis HOM05D004382 ORTHO05D005181 1.6e-29 133.3 137 60.6
Lalb_Chr01g0015971 Lupinus albus HOM05D004382 ORTHO05D005181 1.6e-29 133.3 110 65.5
Nn3g20146 Nelumbo nucifera HOM05D002089 ORTHO05D011346 2.0e-29 132.9 138 60.1
GSVIVG01020484001 Vitis vinifera HOM05D004382 ORTHO05D005181 2.7e-29 132.5 137 61.3
CDE04G0985 Ceratophyllum demersum HOM05D004382 ORTHO05D005181 3.5e-29 132.1 139 57.6
TAR627G0744 Trochodendron aralioides HOM05D004382 ORTHO05D005181 3.5e-29 132.1 110 64.5
HPP92_016563 Vanilla planifolia HOM05D004382 ORTHO05D005181 4.5e-29 131.7 110 65.5
CDE12G0390 Ceratophyllum demersum HOM05D004382 ORTHO05D005181 5.9e-29 131.3 139 56.8
FvH4_3g16050 Fragaria vesca HOM05D004382 ORTHO05D005181 1.0e-28 130.6 139 61.2
FAN11G1612 Fragaria x ananassa HOM05D004382 ORTHO05D005181 1.0e-28 130.6 139 61.2
FAN21G1818 Fragaria x ananassa HOM05D004382 ORTHO05D005181 1.0e-28 130.6 139 60.4
Peaxi162Scf00006g00149 Petunia axillaris HOM05D004382 ORTHO05D005181 1.0e-28 130.6 118 61.0
MD10G1198300 Malus domestica HOM05D004382 ORTHO05D005181 1.3e-28 130.2 119 63.9
PSO541G3267 Papaver somniferum HOM05D004382 ORTHO05D005181 1.3e-28 130.2 142 54.9
PSO675G7775 Papaver somniferum HOM05D004382 ORTHO05D005181 1.3e-28 130.2 142 54.9
Zm00001eb171230 Zea mays HOM05D004382 ORTHO05D005181 1.3e-28 130.2 130 60.0
AUR62022575 Chenopodium quinoa HOM05D004382 ORTHO05D005181 1.7e-28 129.8 138 58.0
RcHm_v2.0_Chr5g0027021 Rosa chinensis HOM05D004382 ORTHO05D005181 1.7e-28 129.8 139 60.4
Sed0016780 Sechium edule HOM05D004382 ORTHO05D005181 1.7e-28 129.8 126 60.3
AUR62004366 Chenopodium quinoa HOM05D004382 ORTHO05D005181 2.2e-28 129.4 140 57.9
FAN25G3309 Fragaria x ananassa HOM05D004382 ORTHO05D005181 2.2e-28 129.4 139 60.4
SEGI_14655 Sequoiadendron giganteum HOM05D004382 ORTHO05D005181 2.2e-28 129.4 145 55.2
MD05G1215200 Malus domestica HOM05D004382 ORTHO05D005181 5.0e-28 128.3 140 58.6
Mapoly0001s0109 Marchantia polymorpha HOM05D004382 ORTHO05D005181 5.0e-28 128.3 151 53.6
Prupe.4G143700 Prunus persica HOM05D004382 ORTHO05D005181 5.0e-28 128.3 137 61.3
Atru.chr2.1854 Acer truncatum HOM05D004382 ORTHO05D005181 8.5e-28 127.5 136 58.1
Glyma.15G253700 Glycine max HOM05D004382 ORTHO05D005181 8.5e-28 127.5 134 59.0
SMO134G0197 Selaginella moellendorffii HOM05D004382 ORTHO05D005181 8.5e-28 127.5 138 53.6
arahy.Tifrunner.gnm1.ann1.9QX17Y Arachis hypogaea HOM05D004382 ORTHO05D005181 1.1e-27 127.1 131 59.5
ATR1098G153 Amborella trichopoda HOM05D004382 ORTHO05D005181 1.5e-27 126.7 117 58.1
Cc05_g15930 Coffea canephora HOM05D004382 ORTHO05D005181 1.5e-27 126.7 118 60.2
ClCG11G016280 Citrullus lanatus HOM05D004382 ORTHO05D005181 1.9e-27 126.3 111 65.8
Duzib187G1376 Durio zibethinus HOM05D004382 ORTHO05D005181 1.9e-27 126.3 137 57.7
Lalb_Chr25g0285191 Lupinus albus HOM05D004382 ORTHO05D005181 1.9e-27 126.3 132 58.3
Nitab4.5_0000313g0040 Nicotiana tabacum HOM05D004382 ORTHO05D005181 1.9e-27 126.3 136 56.6
Solyc07g066310.3 Solanum lycopersicum HOM05D004382 ORTHO05D005181 1.9e-27 126.3 138 55.8
Sopen07g034490 Solanum pennellii HOM05D004382 ORTHO05D005181 1.9e-27 126.3 138 55.8
TWI38G0625 Tripterygium wilfordii HOM05D004382 ORTHO05D005181 1.9e-27 126.3 141 54.6
Glyma.08G173700 Glycine max HOM05D004382 ORTHO05D005181 2.5e-27 125.9 136 58.8
Gorai.002G032900 Gossypium raimondii HOM05D004382 ORTHO05D005181 2.5e-27 125.9 112 63.4
Sed0014118 Sechium edule HOM05D004382 ORTHO05D005181 2.5e-27 125.9 110 65.5
Sed0025739 Sechium edule HOM05D004382 ORTHO05D005181 2.5e-27 125.9 110 65.5
COL.COLO4_05073 Corchorus olitorius HOM05D004382 ORTHO05D005181 3.2e-27 125.6 138 58.7
DCAR_009633 Daucus carota HOM05D004382 ORTHO05D005181 3.2e-27 125.6 120 60.0
Gohir.A01G037100 Gossypium hirsutum HOM05D004382 ORTHO05D005181 3.2e-27 125.6 112 62.5
Nitab4.5_0002475g0030 Nicotiana tabacum HOM05D004382 ORTHO05D005181 3.2e-27 125.6 138 56.5
Psat1g002320 Pisum sativum HOM05D004382 ORTHO05D005181 3.2e-27 125.6 130 57.7
CANSAT56G1367 Cannabis sativa HOM05D004382 ORTHO05D005181 4.2e-27 125.2 137 58.4
CAN.G943.25 Capsicum annuum HOM05D004382 ORTHO05D005181 4.2e-27 125.2 137 54.0
Oeu003841.1 Olea europaea HOM05D004382 ORTHO05D005181 4.2e-27 125.2 123 57.7
Rhsim04G0006200 Rhododendron simsii HOM05D004382 ORTHO05D005181 4.2e-27 125.2 110 61.8
CSS0016237 Camellia sinensis var. sinensis HOM05D004382 ORTHO05D005181 5.5e-27 124.8 144 52.8
Ca_03704_v3 Cicer arietinum L. HOM05D004382 ORTHO05D005181 5.5e-27 124.8 130 56.9
Gohir.D05G330700 Gossypium hirsutum HOM05D004382 ORTHO05D005181 5.5e-27 124.8 137 56.9
Gorai.009G354500 Gossypium raimondii HOM05D004382 ORTHO05D005181 5.5e-27 124.8 137 56.9
Nitab4.5_0000134g0030 Nicotiana tabacum HOM05D004382 ORTHO05D005181 5.5e-27 124.8 142 52.8
Phvul.005G055200 Phaseolus vulgaris HOM05D004382 ORTHO05D005181 5.5e-27 124.8 136 58.8
Sopen12g008070 Solanum pennellii HOM05D004382 ORTHO05D005181 5.5e-27 124.8 127 61.4
arahy.Tifrunner.gnm1.ann1.HCTL36 Arachis hypogaea HOM05D004382 ORTHO05D005181 7.2e-27 124.4 131 58.8
CSS0001445 Camellia sinensis var. sinensis HOM05D004382 ORTHO05D005181 7.2e-27 124.4 142 55.6
PGR142G2616 Punica granatum HOM05D004382 ORTHO05D005181 7.2e-27 124.4 139 54.7
Actinidia37109 Actinidia chinensis HOM05D004382 ORTHO05D005181 9.4e-27 124.0 139 58.3
EL10Ac4g08547 Beta vulgaris HOM05D004382 ORTHO05D005181 9.4e-27 124.0 141 56.0
Thhalv10019302m.g Eutrema salsugineum HOM05D004382 ORTHO05D005181 9.4e-27 124.0 139 52.5
Gohir.A04G050200 Gossypium hirsutum HOM05D004382 ORTHO05D005181 9.4e-27 124.0 137 56.2
MBI02_g25371_MAGBIO Magnolia biondii HOM05D004382 ORTHO05D005181 9.4e-27 124.0 146 50.7
Os07g0147550 Oryza sativa ssp. japonica HOM05D004382 ORTHO05D005181 9.4e-27 124.0 141 52.5
Sc16g0003480 Simmondsia chinensis HOM05D004382 ORTHO05D005181 9.4e-27 124.0 111 61.3
SalBow5G1313 Salvia bowleyana HOM05D004382 ORTHO05D005181 1.2e-26 123.6 111 61.3
SalBow5G2519 Salvia bowleyana HOM05D004382 ORTHO05D005181 1.2e-26 123.6 111 61.3
Solyc12g017250.2 Solanum lycopersicum HOM05D004382 ORTHO05D005181 1.2e-26 123.6 127 60.6
THA.LOC104812349 Tarenaya hassleriana HOM05D004382 ORTHO05D005181 1.2e-26 123.6 129 55.0
MSTRG.7052 Avicennia marina HOM05D004382 ORTHO05D005181 1.6e-26 123.2 142 52.8
A07p27340 Brassica napus HOM05D004382 ORTHO05D005181 1.6e-26 123.2 139 53.2
BraA07t30375Z Brassica rapa HOM05D004382 ORTHO05D005181 1.6e-26 123.2 139 53.2
Lj3g0019499 Lotus japonicus HOM05D004382 ORTHO05D005181 1.6e-26 123.2 137 57.7
Ah.08g216320 Amaranthus hybridus HOM05D004382 ORTHO05D005181 2.1e-26 122.9 140 58.6
Lalb_Chr03g0031561 Lupinus albus HOM05D004382 ORTHO05D005181 2.1e-26 122.9 134 53.7
TPR.G10344 Trifolium pratense HOM05D004382 ORTHO05D005181 2.1e-26 122.9 130 56.9
BcaC03g15860 Brassica carinata HOM05D004382 ORTHO05D005181 2.7e-26 122.5 138 55.8
BcaC08g45389 Brassica carinata HOM05D004382 ORTHO05D005181 2.7e-26 122.5 139 53.2
A02p22470 Brassica napus HOM05D004382 ORTHO05D005181 2.7e-26 122.5 138 55.8
C02p36150 Brassica napus HOM05D004382 ORTHO05D005181 2.7e-26 122.5 138 55.8
C06p30200 Brassica napus HOM05D004382 ORTHO05D005181 2.7e-26 122.5 139 53.2
BolC2t09629H Brassica oleracea HOM05D004382 ORTHO05D005181 2.7e-26 122.5 138 55.8
BolC6t38183H Brassica oleracea HOM05D004382 ORTHO05D005181 2.7e-26 122.5 139 53.2
BraA02t07252Z Brassica rapa HOM05D004382 ORTHO05D005181 2.7e-26 122.5 138 55.8
Oeu002809.1 Olea europaea HOM05D004382 ORTHO05D005181 2.7e-26 122.5 137 54.7
Os07g0147500 Oryza sativa ssp. japonica HOM05D004382 ORTHO05D005181 2.7e-26 122.5 136 52.9
Os08g0200300 Oryza sativa ssp. japonica HOM05D004382 ORTHO05D005181 2.7e-26 122.5 112 61.6
TWI38G0568 Tripterygium wilfordii HOM05D004382 ORTHO05D005181 2.7e-26 122.5 146 55.5
PGSC0003DMG400022241 Solanum tuberosum HOM05D004382 ORTHO05D005181 3.6e-26 122.1 137 52.6
MSTRG.14535 Avicennia marina HOM05D004382 ORTHO05D005181 4.7e-26 121.7 110 61.8
BcaB02g07194 Brassica carinata HOM05D004382 ORTHO05D005181 4.7e-26 121.7 139 52.5
HanXRQChr08g0232801 Helianthus annuus HOM05D004382 ORTHO05D005181 4.7e-26 121.7 135 53.3
QL04p074767 Quercus lobata HOM05D004382 ORTHO05D005181 4.7e-26 121.7 136 55.1
Eucgr.F01447 Eucalyptus grandis HOM05D004382 ORTHO05D005181 6.1e-26 121.3 158 51.3
Sabra11G0127600 Salix brachista HOM05D004382 ORTHO05D005181 6.1e-26 121.3 137 56.2
SalBow8G0430 Salvia bowleyana HOM05D004382 ORTHO05D005181 6.1e-26 121.3 140 51.4
Migut.H01700 Erythranthe guttata HOM05D004382 ORTHO05D005181 8.0e-26 120.9 137 54.0
Sp5g34090 Schrenkiella parvula HOM05D004382 ORTHO05D005181 8.0e-26 120.9 139 51.8
BcaB05g25168 Brassica carinata HOM05D004382 ORTHO05D005181 1.0e-25 120.6 139 51.8
Hma1.2p1_0321F.1_g124500 Hydrangea macrophylla HOM05D004382 ORTHO05D005181 1.0e-25 120.6 137 53.3
Hund10309 Selenicereus undatus HOM05D004382 ORTHO05D005181 1.0e-25 120.6 113 58.4
A07p44190 Brassica napus HOM05D004382 ORTHO05D005181 1.4e-25 120.2 139 53.2
BraA07t31927Z Brassica rapa HOM05D004382 ORTHO05D005181 1.4e-25 120.2 139 53.2
CsaV3_4G007600 Cucumis sativus L. HOM05D004382 ORTHO05D005181 1.4e-25 120.2 138 56.5
Manes.15G102500 Manihot esculenta HOM05D004382 ORTHO05D005181 1.4e-25 120.2 137 56.2
Medtr2g064650 Medicago truncatula HOM05D004382 ORTHO05D005181 1.4e-25 120.2 130 56.2
Peaxi162Scf00232g01129 Petunia axillaris HOM05D004382 ORTHO05D005181 1.4e-25 120.2 138 55.8
CARHR072720 Cardamine hirsuta HOM05D004382 ORTHO05D005181 1.8e-25 119.8 139 53.2
BcaB02g08662 Brassica carinata HOM05D004382 ORTHO05D005181 2.3e-25 119.4 139 52.5
BcaC08g47468 Brassica carinata HOM05D004382 ORTHO05D005181 2.3e-25 119.4 139 52.5
C06p52920 Brassica napus HOM05D004382 ORTHO05D005181 2.3e-25 119.4 139 52.5
BolC6t40310H Brassica oleracea HOM05D004382 ORTHO05D005181 2.3e-25 119.4 139 52.5
Thecc.07G156900 Theobroma cacao HOM05D004382 ORTHO05D005181 2.3e-25 119.4 134 54.5
VMungo1080G1647 Vigna mungo HOM05D004382 ORTHO05D005181 2.3e-25 119.4 136 55.9
AT1G79040 Arabidopsis thaliana HOM05D004382 ORTHO05D005181 3.0e-25 119.0 139 53.2
Carub.0002s2591 Capsella rubella HOM05D004382 ORTHO05D005181 3.0e-25 119.0 139 53.2
Manes.03G082900 Manihot esculenta HOM05D004382 ORTHO05D005181 3.0e-25 119.0 127 52.0
Aa31LG4G1950 Aethionema arabicum HOM05D004382 ORTHO05D005181 4.0e-25 118.6 139 52.5
ClCG07G010700 Citrullus lanatus HOM05D004382 ORTHO05D005181 4.0e-25 118.6 135 57.0
DCAR_013749 Daucus carota HOM05D004382 ORTHO05D005181 4.0e-25 118.6 141 51.8
Ciclev10022793m.g Citrus clementina HOM05D004382 ORTHO05D005181 5.2e-25 118.2 144 50.0
unitig_8.g4771 Utricularia gibba HOM05D004382 ORTHO05D005181 6.8e-25 117.9 138 52.9
vmacro09788 Vaccinium macrocarpon HOM05D004382 ORTHO05D005181 8.8e-25 117.5 139 51.8
DCAR_016816 Daucus carota HOM05D004382 ORTHO05D005181 1.5e-24 116.7 141 50.4
HanXRQChr05g0160651 Helianthus annuus HOM05D004382 ORTHO05D005181 3.4e-24 115.5 135 50.4
Hma1.2p1_0193F.1_g084500 Hydrangea macrophylla HOM05D004382 ORTHO05D005181 3.4e-24 115.5 142 52.1
Nitab4.5_0001791g0030 Nicotiana tabacum HOM05D004382 ORTHO05D005181 3.4e-24 115.5 119 55.5
Potri.001G438700 Populus trichocarpa HOM05D004382 ORTHO05D005181 3.4e-24 115.5 135 52.6
Potri.011G142200 Populus trichocarpa HOM05D004382 ORTHO05D005181 3.4e-24 115.5 136 54.4
ECA236G0888 Erigeron canadensis HOM05D004382 ORTHO05D005181 4.4e-24 115.2 135 50.4
Potri.001G438800 Populus trichocarpa HOM05D004382 ORTHO05D005181 1.7e-23 113.2 146 48.6
Potri.011G142300 Populus trichocarpa HOM05D004382 ORTHO05D005181 1.7e-23 113.2 145 49.0
Rhsim06G0237200 Rhododendron simsii HOM05D006828 ORTHO05D008312 1.7e-23 113.2 103 61.2
AL2G39500 Arabidopsis lyrata HOM05D004382 ORTHO05D005181 2.4e-22 109.4 133 51.9
vmacro11652 Vaccinium macrocarpon HOM05D004382 ORTHO05D005181 4.1e-22 108.6 155 47.7
Lsat_1_v5_gn_7_116120 Lactuca sativa HOM05D004382 ORTHO05D005181 5.4e-22 108.2 129 51.2
Dinv19628 Davidia involucrata HOM05D006828 ORTHO05D008312 7.0e-22 107.8 78 69.2
CBR_g30109 Chara braunii HOM05D000004 ORTHO05D000002 3.8e-20 102.1 72 68.1
Sabra11G0127700 Salix brachista HOM05D004382 ORTHO05D005181 3.3e-19 99.0 144 45.8
Eucgr.F03186 Eucalyptus grandis HOM05D004382 ORTHO05D005181 4.7e-18 95.1 82 62.2
Gohir.D01G024400 Gossypium hirsutum HOM05D004382 ORTHO05D005181 1.8e-17 93.2 84 61.9
PGSC0003DMG400002312 Solanum tuberosum HOM05D004382 ORTHO05D005181 4.4e-16 88.6 116 53.4
PRCOL_00003342 Prasinoderma coloniale HOM05D004382 ORTHO05D005181 1.3e-15 87.0 140 40.7
Cpa.g.c38697 Carica papaya HOM05D004382 ORTHO05D005181 8.3e-15 84.3 52 75.0
Cre06.g261000 Chlamydomonas reinhardtii HOM05D004382 ORTHO05D005181 4.1e-14 82.0 81 55.6
Sabra16G0296700 Salix brachista HOM05D004382 ORTHO05D005181 5.9e-13 78.2 129 41.1
MBI18_g37150_MAGBIO Magnolia biondii HOM05D004382 ORTHO05D005181 1.1e-11 73.9 138 44.2
PGR083G0343 Punica granatum HOM05D004382 ORTHO05D005181 2.3e-09 66.2 89 50.6
MELO3C016181.2 Cucumis melo HOM05D004382 ORTHO05D005181 1.2e-08 63.9 88 52.3
Cpa.g.c37194 Carica papaya HOM05D004382 ORTHO05D005181 3.4e-08 62.4 93 48.4
Haze_08525 Corylus avellana HOM05D004382 ORTHO05D005181 5.8e-08 61.6 48 62.5


User provided reference genes

Program Settings