Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c27_2010 Physcomitrium patens HOM05D019012 ORTHO05D020434 0.0e+00 2082.8 1048 100.0
Pp3c16_16740 Physcomitrium patens HOM05D019012 ORTHO05D020434 0.0e+00 1689.1 1060 81.6
Pp3c16_16743 Physcomitrium patens HOM05D019012 ORTHO05D020434 0.0e+00 1689.1 1060 81.6
SEGI_20805 Sequoiadendron giganteum HOM05D019012 ORTHO05D020434 5.1e-183 646.0 845 43.8
Mapoly0097s0085 Marchantia polymorpha HOM05D019012 ORTHO05D020434 7.0e-124 449.5 573 43.6
Pp3c3_2900 Physcomitrium patens HOM05D067070 ORTHO05D048796 2.3e-26 125.6 158 41.1
Mapoly0033s0119 Marchantia polymorpha HOM05D067070 ORTHO05D048796 5.7e-25 120.9 280 31.8
MCO06G219 Micromonas commoda HOM05D000104 ORTHO05D003467 1.0e-18 100.1 173 35.3
Cre06.g300850 Chlamydomonas reinhardtii HOM05D019012 ORTHO05D020434 7.5e-17 94.0 155 34.8
Zm00001eb308480 Zea mays HOM05D000590 ORTHO05D005739 6.3e-16 90.9 134 35.8
Os09g0134500 Oryza sativa ssp. japonica HOM05D000590 ORTHO05D005739 9.1e-15 87.0 137 35.8
CDE06G2342 Ceratophyllum demersum HOM05D000590 ORTHO05D005739 2.9e-13 82.0 146 32.2
MCO05G222 Micromonas commoda HOM05D019012 ORTHO05D020434 3.8e-13 81.6 321 26.2
ATR0824G108 Amborella trichopoda HOM05D000590 ORTHO05D005739 5.0e-13 81.3 325 27.1
Cpa.g.sc50.132 Carica papaya HOM05D000590 ORTHO05D005739 6.5e-13 80.9 153 31.4
Cc00_g10020 Coffea canephora HOM05D000590 ORTHO05D005739 3.2e-12 78.6 127 35.4
Mapoly0051s0016 Marchantia polymorpha HOM05D000590 ORTHO05D005739 9.4e-12 77.0 208 29.3
CsaV3_1G037770 Cucumis sativus L. HOM05D000329 ORTHO05D000833 1.2e-11 76.6 137 32.8
AagrBONN_evm.TU.Sc2ySwM_344.772 Anthoceros agrestis HOM05D000590 ORTHO05D005739 2.1e-11 75.9 133 30.8
CAN.G710.42 Capsicum annuum HOM05D000590 ORTHO05D005739 2.1e-11 75.9 143 35.7
MD04G1229800 Malus domestica HOM05D000329 ORTHO05D000833 2.1e-11 75.9 166 27.7
Cfa008549 Carpinus fangiana HOM05D000590 ORTHO05D005739 2.7e-11 75.5 169 33.1
Nitab4.5_0001687g0070 Nicotiana tabacum HOM05D000590 ORTHO05D005739 2.7e-11 75.5 143 32.2
Actinidia32949 Actinidia chinensis HOM05D000590 ORTHO05D005739 3.6e-11 75.1 154 32.5
Hma1.2p1_0412F.1_g147170 Hydrangea macrophylla HOM05D000590 ORTHO05D005739 3.6e-11 75.1 158 32.9
ClCG01G008900 Citrullus lanatus HOM05D000329 ORTHO05D000833 4.7e-11 74.7 149 33.6
MBI11_g00125_MAGBIO Magnolia biondii HOM05D000590 ORTHO05D005739 6.1e-11 74.3 138 32.6
Cre03.g197700 Chlamydomonas reinhardtii HOM05D000590 ORTHO05D005739 8.0e-11 73.9 137 30.7
BcaC07g42107 Brassica carinata HOM05D000590 ORTHO05D005739 1.8e-10 72.8 127 32.3
C08p51570 Brassica napus HOM05D000590 ORTHO05D005739 1.8e-10 72.8 127 32.3
Prupe.6G349900 Prunus persica HOM05D000329 ORTHO05D000833 2.3e-10 72.4 146 28.1
Carub.0004s1295 Capsella rubella HOM05D000590 ORTHO05D005739 3.0e-10 72.0 136 32.4
MELO3C021809.2 Cucumis melo HOM05D000329 ORTHO05D000833 3.0e-10 72.0 137 30.7
AT2G31650 Arabidopsis thaliana HOM05D000590 ORTHO05D005739 4.0e-10 71.6 141 31.2
THA.LOC104800910 Tarenaya hassleriana HOM05D000590 ORTHO05D005739 4.0e-10 71.6 134 32.8
Sp4g14050 Schrenkiella parvula HOM05D000590 ORTHO05D005739 5.2e-10 71.2 133 33.1
Sed0020632 Sechium edule HOM05D000590 ORTHO05D005739 5.2e-10 71.2 156 30.1
Sopen09g036190 Solanum pennellii HOM05D000590 ORTHO05D005739 6.8e-10 70.9 138 33.3
AL4G26890 Arabidopsis lyrata HOM05D000590 ORTHO05D005739 8.8e-10 70.5 128 32.0
AT1G05830 Arabidopsis thaliana HOM05D000590 ORTHO05D005739 8.8e-10 70.5 128 32.8
A09p67280 Brassica napus HOM05D000590 ORTHO05D005739 8.8e-10 70.5 128 32.0
Actinidia35907 Actinidia chinensis HOM05D000590 ORTHO05D005739 1.5e-09 69.7 132 34.8
AL1G15760 Arabidopsis lyrata HOM05D000590 ORTHO05D005739 1.5e-09 69.7 128 32.0
BolC8t52685H Brassica oleracea HOM05D000590 ORTHO05D005739 1.5e-09 69.7 128 31.2
BraA09t42058Z Brassica rapa HOM05D004358 ORTHO05D005739 1.5e-09 69.7 128 31.2
Solyc09g098260.3 Solanum lycopersicum HOM05D000590 ORTHO05D005739 1.5e-09 69.7 143 30.8
Ciclev10018602m.g Citrus clementina HOM05D000590 ORTHO05D005739 2.0e-09 69.3 140 33.6
CiPaw.01G108600 Carya illinoinensis HOM05D000590 ORTHO05D005739 3.4e-09 68.6 183 30.6
MD12G1246900 Malus domestica HOM05D000329 ORTHO05D000833 3.4e-09 68.6 166 26.5
Dinv22650 Davidia involucrata HOM05D000590 ORTHO05D005739 4.4e-09 68.2 160 31.2
GSVIVG01013555001 Vitis vinifera HOM05D000590 ORTHO05D005739 4.4e-09 68.2 148 29.7
Cfa006346 Carpinus fangiana HOM05D000329 ORTHO05D000833 5.7e-09 67.8 145 26.9
FAN07G2789 Fragaria x ananassa HOM05D000590 ORTHO05D005739 5.7e-09 67.8 143 30.1
Atru.chr3.1727 Acer truncatum HOM05D000590 ORTHO05D005739 7.5e-09 67.4 149 29.5
Aa31LG5G5330 Aethionema arabicum HOM05D000590 ORTHO05D005739 7.5e-09 67.4 133 30.1
Dinv44239 Davidia involucrata HOM05D000590 ORTHO05D005739 7.5e-09 67.4 136 30.9
Sed0020772 Sechium edule HOM05D000329 ORTHO05D000833 7.5e-09 67.4 153 28.8
Aqoxy1G01547 Aquilegia oxysepala HOM05D000329 ORTHO05D000833 9.8e-09 67.0 159 29.6
Migut.N00443 Erythranthe guttata HOM05D000590 ORTHO05D005739 9.8e-09 67.0 126 32.5
Sp1g04640 Schrenkiella parvula HOM05D000590 ORTHO05D005739 9.8e-09 67.0 128 30.5
SEGI_09405 Sequoiadendron giganteum HOM05D000329 ORTHO05D000833 9.8e-09 67.0 160 25.6
TAR362G0932 Trochodendron aralioides HOM05D000590 ORTHO05D005739 9.8e-09 67.0 135 32.6
Duzib177G0926 Durio zibethinus HOM05D000329 ORTHO05D000833 1.3e-08 66.6 136 30.1
Lj3C343G2 Lonicera japonica HOM05D000590 ORTHO05D005739 1.3e-08 66.6 140 30.7
Pp3c6_7710 Physcomitrium patens HOM05D000590 ORTHO05D005739 1.3e-08 66.6 192 26.0
RcHm_v2.0_Chr4g0409981 Rosa chinensis HOM05D000590 ORTHO05D005739 1.3e-08 66.6 139 31.7
MSTRG.8225 Avicennia marina HOM05D000329 ORTHO05D000833 1.7e-08 66.2 123 29.3
Prupe.1G177800 Prunus persica HOM05D000590 ORTHO05D005739 1.7e-08 66.2 145 32.4
SMO236G0090 Selaginella moellendorffii HOM05D000590 ORTHO05D005739 1.7e-08 66.2 137 30.7
Actinidia40000 Actinidia chinensis HOM05D000329 ORTHO05D000833 2.2e-08 65.9 140 29.3
Aqoxy2G04044 Aquilegia oxysepala HOM05D000590 ORTHO05D005739 2.2e-08 65.9 134 27.6
CSS0029067 Camellia sinensis var. sinensis HOM05D000590 ORTHO05D005739 2.2e-08 65.9 135 31.1
Haze_11082 Corylus avellana HOM05D000590 ORTHO05D005739 2.2e-08 65.9 143 32.9
FAN22G1397 Fragaria x ananassa HOM05D000590 ORTHO05D005739 2.2e-08 65.9 141 30.5
Manes.04G059300 Manihot esculenta HOM05D000590 ORTHO05D005739 2.2e-08 65.9 143 30.8
Pp3c5_20190 Physcomitrium patens HOM05D000590 ORTHO05D005739 2.8e-08 65.5 139 28.8
Aa31LG1G8510 Aethionema arabicum HOM05D000590 ORTHO05D005739 3.7e-08 65.1 127 28.3
ClCG08G003700 Citrullus lanatus HOM05D000590 ORTHO05D005739 3.7e-08 65.1 154 29.9
Cc02_g08870 Coffea canephora HOM05D000329 ORTHO05D000833 3.7e-08 65.1 134 25.4
Thhalv10006646m.g Eutrema salsugineum HOM05D000590 ORTHO05D005739 3.7e-08 65.1 128 30.5
HPP92_008119 Vanilla planifolia HOM05D000590 ORTHO05D005739 3.7e-08 65.1 149 29.5
Carub.0001s0518 Capsella rubella HOM05D000590 ORTHO05D005739 4.8e-08 64.7 128 30.5
Migut.F01543 Erythranthe guttata HOM05D000329 ORTHO05D000833 4.8e-08 64.7 123 27.6
FAN17G1987 Fragaria x ananassa HOM05D000590 ORTHO05D005739 4.8e-08 64.7 143 29.4
QL10p044299 Quercus lobata HOM05D000590 ORTHO05D005739 4.8e-08 64.7 167 28.1
CARHR005360 Cardamine hirsuta HOM05D000590 ORTHO05D005739 6.3e-08 64.3 128 30.5
MELO3C026117.2 Cucumis melo HOM05D000590 ORTHO05D005739 6.3e-08 64.3 154 29.9
Sed0026193 Sechium edule HOM05D000590 ORTHO05D005739 6.3e-08 64.3 131 29.8
FvH4_4g12210 Fragaria vesca HOM05D000590 ORTHO05D005739 8.3e-08 63.9 272 24.3
Gorai.011G144000 Gossypium raimondii HOM05D000590 ORTHO05D005739 8.3e-08 63.9 147 27.9
Potri.002G232800 Populus trichocarpa HOM05D000590 ORTHO05D005739 8.3e-08 63.9 138 31.9
DCAR_023890 Daucus carota HOM05D000590 ORTHO05D005739 1.1e-07 63.5 273 23.8
MBI07_g16915_MAGBIO Magnolia biondii HOM05D000329 ORTHO05D000833 1.1e-07 63.5 123 27.6
Oeu029902.1 Olea europaea HOM05D000590 ORTHO05D005739 1.1e-07 63.5 134 31.3
PSO675G4267 Papaver somniferum HOM05D000590 ORTHO05D005739 1.1e-07 63.5 151 28.5
Potri.014G146300 Populus trichocarpa HOM05D000590 ORTHO05D005739 1.1e-07 63.5 196 29.6
CANSAT54G0692 Cannabis sativa HOM05D000329 ORTHO05D000833 1.4e-07 63.2 136 26.5
PGR083G1455 Punica granatum HOM05D000329 ORTHO05D000833 1.4e-07 63.2 123 28.5
unitig_748.g8680 Utricularia gibba HOM05D000329 ORTHO05D000833 1.4e-07 63.2 120 27.5
A04p24160 Brassica napus HOM05D000590 ORTHO05D005739 1.8e-07 62.8 125 30.4
BraA04t17936Z Brassica rapa HOM05D000590 ORTHO05D005739 1.8e-07 62.8 125 30.4
CsaV3_6G003090 Cucumis sativus L. HOM05D000590 ORTHO05D005739 1.8e-07 62.8 127 31.5
Migut.M01933 Erythranthe guttata HOM05D000329 ORTHO05D000833 1.8e-07 62.8 116 27.6
TAR636G2871 Trochodendron aralioides HOM05D000329 ORTHO05D000833 1.8e-07 62.8 124 29.0
ATR1098G107 Amborella trichopoda HOM05D000329 ORTHO05D000833 2.4e-07 62.4 214 26.6
CiPaw.08G118300 Carya illinoinensis HOM05D000329 ORTHO05D000833 2.4e-07 62.4 137 25.5
QL03p030574 Quercus lobata HOM05D000329 ORTHO05D000833 2.4e-07 62.4 136 27.9
arahy.Tifrunner.gnm1.ann1.631JZ3 Arachis hypogaea HOM05D000590 ORTHO05D005739 3.1e-07 62.0 138 29.7
arahy.Tifrunner.gnm1.ann1.NCWU1I Arachis hypogaea HOM05D000590 ORTHO05D005739 3.1e-07 62.0 138 29.7
MSTRG.21982 Avicennia marina HOM05D000590 ORTHO05D005739 3.1e-07 62.0 126 31.0
CARHR227230 Cardamine hirsuta HOM05D000329 ORTHO05D000833 3.1e-07 62.0 167 25.1
Gohir.A10G136500 Gossypium hirsutum HOM05D000590 ORTHO05D005739 3.1e-07 62.0 147 27.9
HanXRQChr04g0116491 Helianthus annuus HOM05D000329 ORTHO05D000833 3.1e-07 62.0 135 27.4
PSO017G6033 Papaver somniferum HOM05D000590 ORTHO05D005739 3.1e-07 62.0 151 27.8
Sabra02G0177600 Salix brachista HOM05D000590 ORTHO05D005739 3.1e-07 62.0 138 31.2
TWI63G0312 Tripterygium wilfordii HOM05D000590 ORTHO05D005739 3.1e-07 62.0 137 31.4
Lalb_Chr17g0336461 Lupinus albus HOM05D000590 ORTHO05D005739 4.1e-07 61.6 150 30.0
THA.LOC104798578 Tarenaya hassleriana HOM05D000329 ORTHO05D000833 4.1e-07 61.6 105 30.5
ECA236G0498 Erigeron canadensis HOM05D000329 ORTHO05D000833 5.4e-07 61.2 135 26.7
Eucgr.H00451 Eucalyptus grandis HOM05D000590 ORTHO05D005739 5.4e-07 61.2 137 29.9
Sed0011729 Sechium edule HOM05D000329 ORTHO05D000833 5.4e-07 61.2 172 25.0
vmacro03477 Vaccinium macrocarpon HOM05D000329 ORTHO05D000833 5.4e-07 61.2 114 28.9
Lalb_Chr06g0168561 Lupinus albus HOM05D000329 ORTHO05D000833 7.0e-07 60.8 128 28.1
Hund06907 Selenicereus undatus HOM05D000329 ORTHO05D000833 7.0e-07 60.8 120 28.3
Gohir.D10G130300 Gossypium hirsutum HOM05D000590 ORTHO05D005739 9.1e-07 60.5 276 25.0
Medtr1g078070 Medicago truncatula HOM05D000329 ORTHO05D000833 9.1e-07 60.5 137 27.7
Sc07g0007210 Simmondsia chinensis HOM05D000590 ORTHO05D005739 9.1e-07 60.5 132 27.3
TWI63G1778 Tripterygium wilfordii HOM05D000329 ORTHO05D000833 1.2e-06 60.1 136 27.9
TAR627G1171 Trochodendron aralioides HOM05D000329 ORTHO05D000833 1.2e-06 60.1 145 26.2
Eucgr.D01031 Eucalyptus grandis HOM05D000329 ORTHO05D000833 1.6e-06 59.7 123 26.8
MD13G1279000 Malus domestica HOM05D000590 ORTHO05D005739 1.6e-06 59.7 132 31.1
AT4G20400 Arabidopsis thaliana HOM05D000329 ORTHO05D000833 2.0e-06 59.3 165 25.5
Lsat_1_v5_gn_5_63200 Lactuca sativa HOM05D000590 ORTHO05D005739 2.0e-06 59.3 132 29.5
Lalb_Chr02g0149521 Lupinus albus HOM05D000329 ORTHO05D000833 2.0e-06 59.3 138 28.3
Medtr7g021365 Medicago truncatula HOM05D000590 ORTHO05D005739 2.0e-06 59.3 131 29.8
Nitab4.5_0004077g0040 Nicotiana tabacum HOM05D000329 ORTHO05D000833 2.0e-06 59.3 167 25.1
PSO541G0434 Papaver somniferum HOM05D000329 ORTHO05D000833 2.0e-06 59.3 108 25.9
Aa31LG6G2790 Aethionema arabicum HOM05D000329 ORTHO05D000833 2.7e-06 58.9 159 23.9
Carub.0001s2911 Capsella rubella HOM05D000329 ORTHO05D000833 2.7e-06 58.9 109 28.4
Aqoxy2G03663 Aquilegia oxysepala HOM05D000329 ORTHO05D000833 3.5e-06 58.5 125 25.6
Thecc.06G005300 Theobroma cacao HOM05D000329 ORTHO05D000833 3.5e-06 58.5 123 27.6
Zm00001eb191790 Zea mays HOM05D000329 ORTHO05D000833 3.5e-06 58.5 121 29.8
A08p11030 Brassica napus HOM05D000329 ORTHO05D000833 4.5e-06 58.2 108 29.6
BraA08t33094Z Brassica rapa HOM05D000329 ORTHO05D000833 4.5e-06 58.2 108 29.6
COL.COLO4_26868 Corchorus olitorius HOM05D000329 ORTHO05D000833 4.5e-06 58.2 123 26.0
Dinv11974 Davidia involucrata HOM05D000329 ORTHO05D000833 4.5e-06 58.2 123 26.0
Gohir.D05G111900 Gossypium hirsutum HOM05D000329 ORTHO05D000833 4.5e-06 58.2 122 27.0
Gorai.009G116100 Gossypium raimondii HOM05D000329 ORTHO05D000833 4.5e-06 58.2 122 27.0
Lj6g0009351 Lotus japonicus HOM05D000329 ORTHO05D000833 5.9e-06 57.8 174 23.0
Zm00001eb280460 Zea mays HOM05D000329 ORTHO05D000833 5.9e-06 57.8 119 29.4
AL7G33490 Arabidopsis lyrata HOM05D000329 ORTHO05D000833 7.7e-06 57.4 238 23.5
CAN.G954.21 Capsicum annuum HOM05D000329 ORTHO05D000833 7.7e-06 57.4 124 26.6
Gorai.011G005400 Gossypium raimondii HOM05D000329 ORTHO05D000833 7.7e-06 57.4 125 26.4


User provided reference genes

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