Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c25_2980 Physcomitrium patens HOM05D012629 ORTHO05D314698 5.0e-165 584.3 291 100.0
Pp3c16_6040 Physcomitrium patens HOM05D012629 ORTHO05D311537 1.7e-152 542.7 291 92.8
Pp3c10_11580 Physcomitrium patens HOM05D012629 ORTHO05D315663 1.0e-141 506.9 291 88.3
Pp3c15_19470 Physcomitrium patens HOM05D012629 ORTHO05D317660 1.3e-139 500.0 291 87.6
Pp3c1_300 Physcomitrium patens HOM05D012629 ORTHO05D308459 4.8e-139 498.0 291 87.6
Pp3c14_3960 Physcomitrium patens HOM05D012629 ORTHO05D318024 1.9e-127 459.5 291 79.7
Pp3c16_2390 Physcomitrium patens HOM05D012629 ORTHO05D316497 6.0e-126 454.5 291 79.7
Pp3c13_14688 Physcomitrium patens HOM05D012629 ORTHO05D312804 6.5e-112 407.9 291 72.9
Pp3c1_10611 Physcomitrium patens HOM05D012629 ORTHO05D312212 2.1e-110 402.9 257 81.3
Pp3c10_25290 Physcomitrium patens HOM05D012629 ORTHO05D311067 6.1e-78 295.0 189 78.8
Pp3c15_13740 Physcomitrium patens HOM05D012629 ORTHO05D318314 2.8e-46 189.9 111 83.8
Pp3c13_14640 Physcomitrium patens HOM05D012629 ORTHO05D314017 6.2e-46 188.7 107 86.0
Pp3c13_19021 Physcomitrium patens HOM05D012629 ORTHO05D311780 1.2e-33 147.9 83 85.5
Pp3c15_13710 Physcomitrium patens HOM05D013596 ORTHO05D315285 1.7e-24 117.5 146 50.0
Eucgr.B01335 Eucalyptus grandis HOM05D003868 ORTHO05D005364 5.8e-12 75.9 216 31.0
PSO210G0203 Papaver somniferum HOM05D003868 ORTHO05D005364 5.8e-12 75.9 207 26.6
PSO761G0576 Papaver somniferum HOM05D003868 ORTHO05D005364 1.0e-11 75.1 212 28.8
PGR031G0514 Punica granatum HOM05D003868 ORTHO05D005364 1.0e-11 75.1 213 28.6
GSVIVG01031344001 Vitis vinifera HOM05D003868 ORTHO05D005364 2.2e-11 73.9 208 28.4
CSS0017748 Camellia sinensis var. sinensis HOM05D003868 ORTHO05D005364 2.9e-11 73.6 253 28.1
Eucgr.H01340 Eucalyptus grandis HOM05D003868 ORTHO05D005364 3.8e-11 73.2 225 28.0
Prupe.6G302900 Prunus persica HOM05D003868 ORTHO05D005364 3.8e-11 73.2 213 28.2
Aqoxy5G02863 Aquilegia oxysepala HOM05D003868 ORTHO05D005364 6.5e-11 72.4 213 29.1
Eucgr.B01348 Eucalyptus grandis HOM05D003868 ORTHO05D005364 8.4e-11 72.0 208 27.4
CiPaw.02G000700 Carya illinoinensis HOM05D003868 ORTHO05D005364 1.1e-10 71.6 248 27.0
EL10Ac6g15321 Beta vulgaris HOM05D003868 ORTHO05D005364 1.4e-10 71.2 213 29.1
Potri.013G000700 Populus trichocarpa HOM05D003868 ORTHO05D005364 1.9e-10 70.9 213 28.6
Eucgr.B01834 Eucalyptus grandis HOM05D003868 ORTHO05D005364 4.2e-10 69.7 204 30.4
Atru.chr12.1514 Acer truncatum HOM05D003868 ORTHO05D005364 5.5e-10 69.3 253 27.7
Manes.09G182200 Manihot esculenta HOM05D003868 ORTHO05D005364 5.5e-10 69.3 283 25.4
SHI18007 Sapria himalayana HOM05D003868 ORTHO05D005364 5.5e-10 69.3 273 26.0
SGA_v2.0_scaffold464G51994 Striga asiatica HOM05D003868 ORTHO05D005364 7.1e-10 68.9 182 29.7
Eucgr.B01336 Eucalyptus grandis HOM05D003868 ORTHO05D005364 9.3e-10 68.6 208 26.9
MD04G1184400 Malus domestica HOM05D003868 ORTHO05D005364 9.3e-10 68.6 248 26.2
CARHR186910 Cardamine hirsuta HOM05D003868 ORTHO05D005364 1.6e-09 67.8 273 26.7
Gohir.A10G176900 Gossypium hirsutum HOM05D003868 ORTHO05D005364 1.6e-09 67.8 260 26.5
Gohir.D10G183600 Gossypium hirsutum HOM05D003868 ORTHO05D005364 1.6e-09 67.8 260 26.5
Gorai.011G205800 Gossypium raimondii HOM05D003868 ORTHO05D005364 1.6e-09 67.8 260 26.5
QL03p011251 Quercus lobata HOM05D003868 ORTHO05D005364 1.6e-09 67.8 227 27.8
Aqoxy2G02412 Aquilegia oxysepala HOM05D003868 ORTHO05D005364 2.1e-09 67.4 181 27.6
AUR62017868 Chenopodium quinoa HOM05D003868 ORTHO05D005364 2.1e-09 67.4 186 30.6
Ciclev10028527m.g Citrus clementina HOM05D003868 ORTHO05D005364 2.7e-09 67.0 252 27.0
Duzib128G0320 Durio zibethinus HOM05D003868 ORTHO05D005364 2.7e-09 67.0 220 26.4
HPP92_017311 Vanilla planifolia HOM05D003868 ORTHO05D005364 2.7e-09 67.0 190 27.4
Eucgr.B01342 Eucalyptus grandis HOM05D003868 ORTHO05D005364 3.5e-09 66.6 193 28.0
Gohir.D13G117100 Gossypium hirsutum HOM05D003868 ORTHO05D005364 3.5e-09 66.6 217 26.3
Manes.08G106600 Manihot esculenta HOM05D003868 ORTHO05D005364 3.5e-09 66.6 248 25.8
Pp3c2_30860 Physcomitrium patens HOM05D003868 ORTHO05D005364 3.5e-09 66.6 247 26.3
Pp3c11_1310 Physcomitrium patens HOM05D003868 ORTHO05D005364 6.0e-09 65.9 247 25.1
AUR62003554 Chenopodium quinoa HOM05D003868 ORTHO05D005364 7.9e-09 65.5 186 30.1
Gohir.A13G114100 Gossypium hirsutum HOM05D003868 ORTHO05D005364 7.9e-09 65.5 217 26.3
Gorai.013G131700 Gossypium raimondii HOM05D003868 ORTHO05D005364 7.9e-09 65.5 217 26.3
AL6G38510 Arabidopsis lyrata HOM05D003868 ORTHO05D005364 1.0e-08 65.1 273 25.6
AT5G26680 Arabidopsis thaliana HOM05D003868 ORTHO05D005364 1.0e-08 65.1 273 25.6
Carub.0006s2428 Capsella rubella HOM05D003868 ORTHO05D005364 1.0e-08 65.1 273 25.6
Thhalv10004386m.g Eutrema salsugineum HOM05D003868 ORTHO05D005364 1.3e-08 64.7 273 25.6
Cpa.g.sc48.229 Carica papaya HOM05D003868 ORTHO05D005364 1.8e-08 64.3 207 26.1
Sp2g21320 Schrenkiella parvula HOM05D003868 ORTHO05D005364 3.9e-08 63.2 273 25.3
Actinidia17731 Actinidia chinensis HOM05D003868 ORTHO05D005364 6.7e-08 62.4 115 33.9
Hund04404 Selenicereus undatus HOM05D003868 ORTHO05D005364 6.7e-08 62.4 190 27.9
CDE09G0492 Ceratophyllum demersum HOM05D003868 ORTHO05D005364 1.1e-07 61.6 101 35.6
SEGI_17973 Sequoiadendron giganteum HOM05D003868 ORTHO05D005364 1.1e-07 61.6 252 25.4
Glyma.05G163700 Glycine max HOM05D002606 ORTHO05D003016 1.9e-07 60.8 179 27.4
Cre07.g353950 Chlamydomonas reinhardtii HOM05D002606 ORTHO05D003016 2.5e-07 60.5 186 28.0
Thecc.06G159700 Theobroma cacao HOM05D002606 ORTHO05D003016 2.5e-07 60.5 192 26.0
BcaB04g19723 Brassica carinata HOM05D003868 ORTHO05D005364 3.3e-07 60.1 274 25.2
MCO07G337 Micromonas commoda HOM05D003868 ORTHO05D005364 3.3e-07 60.1 221 25.3
Atru.chr10.1471 Acer truncatum HOM05D002606 ORTHO05D003016 7.4e-07 58.9 192 25.5
Manes.17G062800 Manihot esculenta HOM05D002606 ORTHO05D003016 7.4e-07 58.9 192 25.5
Cre03.g145687 Chlamydomonas reinhardtii HOM05D003868 ORTHO05D005364 9.6e-07 58.5 256 25.4
Duzib235G0230 Durio zibethinus HOM05D002606 ORTHO05D003016 9.6e-07 58.5 192 26.0
Glyma.08G120900 Glycine max HOM05D002606 ORTHO05D003016 9.6e-07 58.5 179 26.8
MD10G1269500 Malus domestica HOM05D002606 ORTHO05D003016 1.6e-06 57.8 179 26.3
Ciclev10014561m.g Citrus clementina HOM05D002606 ORTHO05D003016 2.1e-06 57.4 192 24.5
Eucgr.B01835 Eucalyptus grandis HOM05D003868 ORTHO05D005364 2.1e-06 57.4 121 32.2
Hma1.2p1_0015F.1_g010570 Hydrangea macrophylla HOM05D002606 ORTHO05D003016 2.1e-06 57.4 192 25.5
Gohir.A10G032600 Gossypium hirsutum HOM05D002606 ORTHO05D003016 2.8e-06 57.0 187 26.2
Gohir.D10G033300 Gossypium hirsutum HOM05D002606 ORTHO05D003016 2.8e-06 57.0 192 25.5
Gorai.011G035100 Gossypium raimondii HOM05D002606 ORTHO05D003016 2.8e-06 57.0 192 25.5
GSVIVG01021316001 Vitis vinifera HOM05D002606 ORTHO05D003016 2.8e-06 57.0 192 24.5
Cc09_g09990 Coffea canephora HOM05D002606 ORTHO05D003016 3.7e-06 56.6 200 26.0
RcHm_v2.0_Chr5g0012821 Rosa chinensis HOM05D002606 ORTHO05D003016 3.7e-06 56.6 179 28.5
Aqoxy4G00175 Aquilegia oxysepala HOM05D002606 ORTHO05D003016 4.8e-06 56.2 200 27.0
Sed0008006 Sechium edule HOM05D002606 ORTHO05D003016 4.8e-06 56.2 179 28.5
TPR.G6726 Trifolium pratense HOM05D002606 ORTHO05D003016 6.2e-06 55.8 179 24.6
arahy.Tifrunner.gnm1.ann1.0CW7N2 Arachis hypogaea HOM05D002606 ORTHO05D003016 8.2e-06 55.5 196 26.5
arahy.Tifrunner.gnm1.ann1.CS3QBI Arachis hypogaea HOM05D002606 ORTHO05D003016 8.2e-06 55.5 196 26.5
CAN.G257.100 Capsicum annuum HOM05D002606 ORTHO05D003016 8.2e-06 55.5 199 27.1
Eucgr.B01326 Eucalyptus grandis HOM05D003868 ORTHO05D005364 8.2e-06 55.5 210 25.7
FvH4_3g06460 Fragaria vesca HOM05D002606 ORTHO05D003016 8.2e-06 55.5 179 27.4
FAN11G1742 Fragaria x ananassa HOM05D002606 ORTHO05D003016 8.2e-06 55.5 179 27.4
FAN16G3491 Fragaria x ananassa HOM05D002606 ORTHO05D003016 8.2e-06 55.5 179 27.4
FAN25G0150 Fragaria x ananassa HOM05D002606 ORTHO05D003016 8.2e-06 55.5 179 27.4


User provided reference genes

Program Settings