Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c25_230 Physcomitrium patens HOM05D005020 ORTHO05D006017 1.0e-24 115.9 58 100.0
Nn3g21237 Nelumbo nucifera HOM05D005020 ORTHO05D006017 1.7e-19 98.6 58 82.8
Aqoxy5G00600 Aquilegia oxysepala HOM05D005020 ORTHO05D006017 2.2e-19 98.2 58 81.0
MBI19_g27958_MAGBIO Magnolia biondii HOM05D005020 ORTHO05D006017 2.2e-19 98.2 58 81.0
MBI19_g38516_MAGBIO Magnolia biondii HOM05D005020 ORTHO05D006017 2.2e-19 98.2 58 81.0
Mapoly0051s0101 Marchantia polymorpha HOM05D005020 ORTHO05D006017 1.9e-18 95.1 58 84.5
Os05g0452600 Oryza sativa ssp. japonica HOM05D005020 ORTHO05D006017 3.2e-18 94.4 58 79.3
Os05g0513500 Oryza sativa ssp. japonica HOM05D005020 ORTHO05D006017 3.2e-18 94.4 58 79.3
ECA236G1604 Erigeron canadensis HOM05D001652 ORTHO05D001768 1.2e-17 92.4 56 78.6
Sc07g0000370 Simmondsia chinensis HOM05D005020 ORTHO05D006017 2.7e-17 91.3 57 75.4
Hma1.2p1_0078F.1_g040900 Hydrangea macrophylla HOM05D005020 ORTHO05D006017 4.6e-17 90.5 56 76.8
Hma1.2p1_0643F.1_g194650 Hydrangea macrophylla HOM05D005020 ORTHO05D006017 4.6e-17 90.5 56 75.0
Hma1.2p1_1671F.1_g296720 Hydrangea macrophylla HOM05D005020 ORTHO05D006017 4.6e-17 90.5 56 76.8
AUR62042176 Chenopodium quinoa HOM05D005020 ORTHO05D006017 6.0e-17 90.1 58 72.4
Hund19410 Selenicereus undatus HOM05D005020 ORTHO05D006017 7.8e-17 89.7 57 73.7
vmacro08225 Vaccinium macrocarpon HOM05D005020 ORTHO05D006017 1.3e-16 89.0 56 75.0
GSVIVG01017833001 Vitis vinifera HOM05D005020 ORTHO05D006017 1.7e-16 88.6 56 75.0
CSS0014078 Camellia sinensis var. sinensis HOM05D005020 ORTHO05D006017 3.0e-16 87.8 56 73.2
EL10Ac1g01270 Beta vulgaris HOM05D005020 ORTHO05D006017 3.9e-16 87.4 53 73.6
Dinv44441 Davidia involucrata HOM05D005020 ORTHO05D006017 6.6e-16 86.7 56 73.2
AUR62013383 Chenopodium quinoa HOM05D006144 ORTHO05D006017 8.6e-16 86.3 55 72.7
PGR004G1273 Punica granatum HOM05D005020 ORTHO05D006017 8.6e-16 86.3 56 71.4
PRCOL_00001856 Prasinoderma coloniale HOM05D005020 ORTHO05D006017 6.2e-14 80.1 56 71.4
MELO3C002800.2 Cucumis melo HOM05D005020 ORTHO05D006017 1.1e-13 79.3 56 71.4
CsaV3_1G037420 Cucumis sativus L. HOM05D005020 ORTHO05D006017 1.1e-13 79.3 56 71.4
DCAR_021248 Daucus carota HOM05D005020 ORTHO05D006017 1.1e-13 79.3 56 73.2
Sed0013068 Sechium edule HOM05D005020 ORTHO05D006017 1.1e-13 79.3 56 71.4
Sed0022382 Sechium edule HOM05D005020 ORTHO05D006017 1.1e-13 79.3 56 71.4
SalBow2G1326 Salvia bowleyana HOM05D005020 ORTHO05D006017 1.4e-13 79.0 58 72.4
SHI00341 Sapria himalayana HOM05D005020 ORTHO05D006017 1.4e-13 79.0 50 76.0
Cfa015516 Carpinus fangiana HOM05D005020 ORTHO05D006017 1.8e-13 78.6 56 71.4
CiPaw.01G155200 Carya illinoinensis HOM05D005020 ORTHO05D006017 1.8e-13 78.6 56 71.4
Lalb_Chr19g0127231 Lupinus albus HOM05D005020 ORTHO05D006017 1.8e-13 78.6 56 71.4
Manes.03G189700 Manihot esculenta HOM05D005020 ORTHO05D006017 1.8e-13 78.6 56 67.9
Manes.15G018900 Manihot esculenta HOM05D005020 ORTHO05D006017 1.8e-13 78.6 56 67.9
arahy.Tifrunner.gnm1.ann1.X3M77N Arachis hypogaea HOM05D005020 ORTHO05D006017 2.3e-13 78.2 56 71.4
Cpa.g.sc16.89 Carica papaya HOM05D005020 ORTHO05D006017 2.3e-13 78.2 56 67.9
Glyma.14G127700 Glycine max HOM05D005020 ORTHO05D006017 2.3e-13 78.2 56 71.4
Glyma.17G206500 Glycine max HOM05D005020 ORTHO05D006017 2.3e-13 78.2 56 71.4
Prupe.1G144200 Prunus persica HOM05D005020 ORTHO05D006017 2.3e-13 78.2 56 69.6
ClCG03G006340 Citrullus lanatus HOM05D005020 ORTHO05D006017 3.1e-13 77.8 54 72.2
Lj4g0020188 Lotus japonicus HOM05D005020 ORTHO05D006017 3.1e-13 77.8 56 71.4
FvH4_4g16940 Fragaria vesca HOM05D005020 ORTHO05D006017 4.0e-13 77.4 56 67.9
FAN07G1494 Fragaria x ananassa HOM05D005020 ORTHO05D006017 4.0e-13 77.4 56 67.9
FAN12G2862 Fragaria x ananassa HOM05D005020 ORTHO05D006017 4.0e-13 77.4 56 67.9
FAN12G3322 Fragaria x ananassa HOM05D005020 ORTHO05D006017 4.0e-13 77.4 56 67.9
FAN17G2450 Fragaria x ananassa HOM05D005020 ORTHO05D006017 4.0e-13 77.4 56 67.9
Gohir.D10G164900 Gossypium hirsutum HOM05D005020 ORTHO05D006017 4.0e-13 77.4 56 67.9
CARHR080840 Cardamine hirsuta HOM05D005020 ORTHO05D006017 5.2e-13 77.0 56 67.9
CARHR194220 Cardamine hirsuta HOM05D005020 ORTHO05D006017 5.2e-13 77.0 56 67.9
Potri.010G025900 Populus trichocarpa HOM05D005020 ORTHO05D006017 5.2e-13 77.0 56 67.9
Sabra10G0013700 Salix brachista HOM05D005020 ORTHO05D006017 5.2e-13 77.0 56 67.9
SMO164G0143 Selaginella moellendorffii HOM05D005020 ORTHO05D006017 5.2e-13 77.0 59 67.8
THA.LOC104827124 Tarenaya hassleriana HOM05D005020 ORTHO05D006017 5.2e-13 77.0 56 67.9
CANSAT56G0421 Cannabis sativa HOM05D005020 ORTHO05D006017 6.8e-13 76.6 56 67.9
CANSAT78G0757 Cannabis sativa HOM05D005020 ORTHO05D006017 6.8e-13 76.6 56 67.9
Lj1g0002998 Lotus japonicus HOM05D005020 ORTHO05D006017 6.8e-13 76.6 56 69.6
Medtr1g015500 Medicago truncatula HOM05D005020 ORTHO05D006017 6.8e-13 76.6 54 72.2
Phvul.001G054200 Phaseolus vulgaris HOM05D005020 ORTHO05D006017 6.8e-13 76.6 56 69.6
Phvul.L006901 Phaseolus vulgaris HOM05D005020 ORTHO05D006017 6.8e-13 76.6 56 69.6
Ca_12921_v3 Cicer arietinum L. HOM05D005020 ORTHO05D006017 8.9e-13 76.3 56 69.6
Cc03_g02550 Coffea canephora HOM05D005020 ORTHO05D006017 8.9e-13 76.3 58 72.4
Duzib052G0657 Durio zibethinus HOM05D005020 ORTHO05D006017 8.9e-13 76.3 56 66.1
Duzib151G1019 Durio zibethinus HOM05D005020 ORTHO05D006017 8.9e-13 76.3 56 66.1
Gohir.A09G232900 Gossypium hirsutum HOM05D005020 ORTHO05D006017 8.9e-13 76.3 56 66.1
Gohir.A10G103500 Gossypium hirsutum HOM05D005020 ORTHO05D006017 8.9e-13 76.3 56 66.1
Gohir.D09G234000 Gossypium hirsutum HOM05D005020 ORTHO05D006017 8.9e-13 76.3 56 66.1
Gorai.006G256900 Gossypium raimondii HOM05D005020 ORTHO05D006017 8.9e-13 76.3 56 66.1
Gorai.011G184100 Gossypium raimondii HOM05D005020 ORTHO05D006017 8.9e-13 76.3 56 66.1
MCO12G337 Micromonas commoda HOM05D005020 ORTHO05D006017 8.9e-13 76.3 53 66.0
Thecc.04G274600 Theobroma cacao HOM05D005020 ORTHO05D006017 8.9e-13 76.3 56 66.1
TPR.G15673 Trifolium pratense HOM05D005020 ORTHO05D006017 8.9e-13 76.3 53 71.7
Aa31LG5G16820 Aethionema arabicum HOM05D000373 ORTHO05D001146 1.2e-12 75.9 50 72.0
arahy.Tifrunner.gnm1.ann1.9N5T6G Arachis hypogaea HOM05D005020 ORTHO05D006017 1.2e-12 75.9 54 70.4
Oeu044803.1 Olea europaea HOM05D005020 ORTHO05D006017 1.2e-12 75.9 58 69.0
RcHm_v2.0_Chr4g0420521 Rosa chinensis HOM05D005020 ORTHO05D006017 1.2e-12 75.9 56 66.1
CANSAT56G2258 Cannabis sativa HOM05D005020 ORTHO05D006017 1.5e-12 75.5 56 67.9
MD13G1175500 Malus domestica HOM05D005020 ORTHO05D006017 1.5e-12 75.5 56 67.9
SGA_v2.0_scaffold89G27567 Striga asiatica HOM05D005020 ORTHO05D006017 1.5e-12 75.5 58 69.0
TWI09G1024 Tripterygium wilfordii HOM05D005020 ORTHO05D006017 2.0e-12 75.1 56 66.1
Psat6g030200 Pisum sativum HOM05D005020 ORTHO05D006017 2.6e-12 74.7 56 66.1
AL3G17250 Arabidopsis lyrata HOM05D005020 ORTHO05D006017 3.4e-12 74.3 56 66.1
AL6G30140 Arabidopsis lyrata HOM05D005020 ORTHO05D006017 3.4e-12 74.3 56 66.1
AT3G06320 Arabidopsis thaliana HOM05D005020 ORTHO05D006017 3.4e-12 74.3 56 66.1
AT5G18790 Arabidopsis thaliana HOM05D005020 ORTHO05D006017 3.4e-12 74.3 56 66.1
BcaB01g04890 Brassica carinata HOM05D005020 ORTHO05D006017 3.4e-12 74.3 56 66.1
BcaB01g05274 Brassica carinata HOM05D005020 ORTHO05D006017 3.4e-12 74.3 56 66.1
BcaB08g36644 Brassica carinata HOM05D005020 ORTHO05D006017 3.4e-12 74.3 56 66.1
BcaC03g13617 Brassica carinata HOM05D005020 ORTHO05D006017 3.4e-12 74.3 56 66.1
BcaC04g18647 Brassica carinata HOM05D005020 ORTHO05D006017 3.4e-12 74.3 56 66.1
A03p09130 Brassica napus HOM05D005020 ORTHO05D006017 3.4e-12 74.3 56 66.1
A10p20820 Brassica napus HOM05D005020 ORTHO05D006017 3.4e-12 74.3 56 66.1
C03p10660 Brassica napus HOM05D005020 ORTHO05D006017 3.4e-12 74.3 56 66.1
C09p57700 Brassica napus HOM05D005020 ORTHO05D006017 3.4e-12 74.3 56 66.1
BolC2t06915H Brassica oleracea HOM05D005020 ORTHO05D006017 3.4e-12 74.3 56 66.1
BolC3t13542H Brassica oleracea HOM05D005020 ORTHO05D006017 3.4e-12 74.3 56 66.1
BolC9t58641H Brassica oleracea HOM05D005020 ORTHO05D006017 3.4e-12 74.3 56 66.1
BraA02t05468Z Brassica rapa HOM05D005020 ORTHO05D006017 3.4e-12 74.3 56 66.1
BraA03t10236Z Brassica rapa HOM05D005020 ORTHO05D006017 3.4e-12 74.3 56 66.1
BraA10t44147Z Brassica rapa HOM05D005020 ORTHO05D006017 3.4e-12 74.3 56 66.1
Carub.0003s0575 Capsella rubella HOM05D005020 ORTHO05D006017 3.4e-12 74.3 56 66.1
Carub.0006s1709 Capsella rubella HOM05D005020 ORTHO05D006017 3.4e-12 74.3 56 66.1
Thhalv10015229m.g Eutrema salsugineum HOM05D005020 ORTHO05D006017 3.4e-12 74.3 56 66.1
Thhalv10022246m.g Eutrema salsugineum HOM05D005020 ORTHO05D006017 3.4e-12 74.3 56 66.1
MD16G1177300 Malus domestica HOM05D005020 ORTHO05D006017 3.4e-12 74.3 56 67.9
Sp3g05230 Schrenkiella parvula HOM05D005020 ORTHO05D006017 3.4e-12 74.3 56 66.1
Sp6g25600 Schrenkiella parvula HOM05D005020 ORTHO05D006017 3.4e-12 74.3 56 66.1
Migut.N00131 Erythranthe guttata HOM05D005020 ORTHO05D006017 5.8e-12 73.6 58 67.2
Migut.N02789 Erythranthe guttata HOM05D005020 ORTHO05D006017 5.8e-12 73.6 58 67.2
HanXRQChr04g0113831 Helianthus annuus HOM05D005020 ORTHO05D006017 5.8e-12 73.6 54 64.8
Nitab4.5_0000191g0090 Nicotiana tabacum HOM05D005020 ORTHO05D006017 5.8e-12 73.6 58 65.5
Nitab4.5_0001044g0170 Nicotiana tabacum HOM05D005020 ORTHO05D006017 5.8e-12 73.6 58 65.5
Nitab4.5_0003546g0060 Nicotiana tabacum HOM05D005020 ORTHO05D006017 5.8e-12 73.6 58 65.5
Peaxi162Scf00989g00014 Petunia axillaris HOM05D005020 ORTHO05D006017 5.8e-12 73.6 58 65.5
unitig_0.g344 Utricularia gibba HOM05D005020 ORTHO05D006017 1.3e-11 72.4 58 67.2
Sopen04g005240 Solanum pennellii HOM05D005020 ORTHO05D006017 2.9e-11 71.2 58 65.5
Solyc04g010100.2 Solanum lycopersicum HOM05D005020 ORTHO05D006017 4.9e-11 70.5 58 63.8
Solyc04g016390.2 Solanum lycopersicum HOM05D005020 ORTHO05D006017 4.9e-11 70.5 58 63.8
Sopen04g008480 Solanum pennellii HOM05D005020 ORTHO05D006017 4.9e-11 70.5 58 63.8
PGSC0003DMG400011474 Solanum tuberosum HOM05D005020 ORTHO05D006017 4.9e-11 70.5 58 63.8
PGSC0003DMG400012700 Solanum tuberosum HOM05D005020 ORTHO05D006017 6.4e-11 70.1 58 63.8
MD10G1048100 Malus domestica HOM05D005020 ORTHO05D006017 1.1e-10 69.3 49 65.3
Aqoxy6G00317 Aquilegia oxysepala HOM05D005020 ORTHO05D006017 1.9e-10 68.6 40 80.0
Cre16.g653601 Chlamydomonas reinhardtii HOM05D005020 ORTHO05D006017 1.9e-10 68.6 54 61.1
FvH4_7g00350 Fragaria vesca HOM05D005020 ORTHO05D006017 9.2e-10 66.2 55 60.0
FAN06G3024 Fragaria x ananassa HOM05D005020 ORTHO05D006017 1.6e-09 65.5 55 60.0
RcHm_v2.0_Chr7g0218551 Rosa chinensis HOM05D005020 ORTHO05D006017 1.6e-09 65.5 55 58.2
Peaxi162Scf00048g00206 Petunia axillaris HOM05D005020 ORTHO05D006017 1.7e-08 62.0 48 64.6
ClCG05G009260 Citrullus lanatus HOM05D005020 ORTHO05D006017 3.9e-08 60.8 46 60.9
Ca_29279_v3 Cicer arietinum L. HOM05D005020 ORTHO05D006017 6.6e-08 60.1 54 51.9
Haze_09410 Corylus avellana HOM05D005020 ORTHO05D006017 6.6e-08 60.1 56 53.6
CsaV3_3G019510 Cucumis sativus L. HOM05D005020 ORTHO05D006017 6.6e-08 60.1 46 60.9
SMO196G0139 Selaginella moellendorffii HOM05D005020 ORTHO05D006017 8.6e-08 59.7 52 55.8
arahy.Tifrunner.gnm1.ann1.74ZUP2 Arachis hypogaea HOM05D005020 ORTHO05D006017 1.5e-07 58.9 46 60.9
arahy.Tifrunner.gnm1.ann1.M920DF Arachis hypogaea HOM05D005020 ORTHO05D006017 1.5e-07 58.9 46 60.9
MELO3C019403.2 Cucumis melo HOM05D005020 ORTHO05D006017 1.9e-07 58.5 44 61.4
MD11G1225600 Malus domestica HOM05D005020 ORTHO05D006017 3.3e-07 57.8 51 52.9
Phvul.011G128100 Phaseolus vulgaris HOM05D005020 ORTHO05D006017 4.3e-07 57.4 55 52.7
Thecc.07G096200 Theobroma cacao HOM05D005020 ORTHO05D006017 5.6e-07 57.0 46 60.9
FAN22G0856 Fragaria x ananassa HOM05D005020 ORTHO05D006017 7.3e-07 56.6 44 61.4
Potri.001G396700 Populus trichocarpa HOM05D005020 ORTHO05D006017 1.2e-06 55.8 53 52.8
VMungo1127G0297 Vigna mungo HOM05D005020 ORTHO05D006017 2.8e-06 54.7 52 51.9
Nitab4.5_0002081g0130 Nicotiana tabacum HOM05D005020 ORTHO05D006017 3.6e-06 54.3 43 62.8
Sabra16G0259800 Salix brachista HOM05D005020 ORTHO05D006017 3.6e-06 54.3 53 52.8
Cfa020606 Carpinus fangiana HOM05D006014 ORTHO05D007608 4.7e-06 53.9 57 52.6


User provided reference genes

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