Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c24_8730 Physcomitrium patens HOM05D003618 ORTHO05D004302 1.3e-274 949.1 486 100.0
Pp3c8_12290 Physcomitrium patens HOM05D003618 ORTHO05D004302 2.3e-247 858.6 486 89.1
Mapoly0064s0074 Marchantia polymorpha HOM05D003618 ORTHO05D004302 2.5e-201 705.7 445 78.7
Mapoly0034s0078 Marchantia polymorpha HOM05D003618 ORTHO05D004302 4.0e-199 698.4 477 74.8
Peaxi162Scf00017g02915 Petunia axillaris HOM05D003618 ORTHO05D004302 6.0e-195 684.5 425 79.1
Nitab4.5_0007719g0010 Nicotiana tabacum HOM05D003618 ORTHO05D004302 1.7e-194 682.9 424 78.8
Nitab4.5_0009783g0020 Nicotiana tabacum HOM05D003618 ORTHO05D004302 1.7e-194 682.9 424 78.8
Haze_07469 Corylus avellana HOM05D003618 ORTHO05D004302 2.5e-193 679.1 419 79.2
BcaB02g09693 Brassica carinata HOM05D003618 ORTHO05D004302 7.3e-193 677.6 420 78.1
HanXRQChr09g0272201 Helianthus annuus HOM05D003618 ORTHO05D004302 7.3e-193 677.6 479 71.6
MD06G1174000 Malus domestica HOM05D003618 ORTHO05D004302 7.3e-193 677.6 420 78.8
THA.LOC104818235 Tarenaya hassleriana HOM05D003618 ORTHO05D004302 1.2e-192 676.8 415 78.6
MD14G1180500 Malus domestica HOM05D003618 ORTHO05D004302 2.1e-192 676.0 420 78.3
arahy.Tifrunner.gnm1.ann1.2KV8GB Arachis hypogaea HOM05D003618 ORTHO05D004302 2.8e-192 675.6 412 80.1
arahy.Tifrunner.gnm1.ann1.9FL7A6 Arachis hypogaea HOM05D003618 ORTHO05D004302 2.8e-192 675.6 412 80.1
Solyc03g114340.3 Solanum lycopersicum HOM05D003618 ORTHO05D004302 2.8e-192 675.6 417 78.9
Sopen03g033440 Solanum pennellii HOM05D003618 ORTHO05D004302 2.8e-192 675.6 417 78.9
Migut.I00013 Erythranthe guttata HOM05D003618 ORTHO05D004302 3.6e-192 675.2 414 80.2
Thhalv10004122m.g Eutrema salsugineum HOM05D003618 ORTHO05D004302 3.6e-192 675.2 406 80.0
CiPaw.11G026400 Carya illinoinensis HOM05D003618 ORTHO05D004302 4.7e-192 674.9 419 78.0
Lj5A124T67 Lonicera japonica HOM05D003618 ORTHO05D004302 4.7e-192 674.9 434 76.3
Hund02742 Selenicereus undatus HOM05D003618 ORTHO05D004302 4.7e-192 674.9 417 79.1
FvH4_5g05300 Fragaria vesca HOM05D003618 ORTHO05D004302 6.2e-192 674.5 419 78.3
FAN18G3775 Fragaria x ananassa HOM05D003618 ORTHO05D004302 6.2e-192 674.5 419 78.3
Aqoxy3G02948 Aquilegia oxysepala HOM05D003618 ORTHO05D004302 8.1e-192 674.1 414 78.7
Cfa019131 Carpinus fangiana HOM05D003618 ORTHO05D004302 1.4e-191 673.3 419 79.0
CARHR276570 Cardamine hirsuta HOM05D003618 ORTHO05D004302 1.8e-191 672.9 436 75.5
A06p29560 Brassica napus HOM05D003618 ORTHO05D004302 2.4e-191 672.5 436 75.5
Prupe.5G174000 Prunus persica HOM05D003618 ORTHO05D004302 3.1e-191 672.2 411 79.3
QL10p011706 Quercus lobata HOM05D003618 ORTHO05D004302 3.1e-191 672.2 417 78.4
SEGI_37686 Sequoiadendron giganteum HOM05D003618 ORTHO05D004302 3.1e-191 672.2 458 73.8
Eucgr.B00316 Eucalyptus grandis HOM05D003618 ORTHO05D004302 4.0e-191 671.8 420 77.9
RcHm_v2.0_Chr7g0193571 Rosa chinensis HOM05D003618 ORTHO05D004302 4.0e-191 671.8 419 78.3
Sp2g25950 Schrenkiella parvula HOM05D003618 ORTHO05D004302 4.0e-191 671.8 406 79.6
TPR.G37486 Trifolium pratense HOM05D003618 ORTHO05D004302 5.2e-191 671.4 449 73.3
BcaNung01381 Brassica carinata HOM05D003618 ORTHO05D004302 6.9e-191 671.0 436 75.2
C09p08850 Brassica napus HOM05D003618 ORTHO05D004302 6.9e-191 671.0 416 78.1
BolC9t53797H Brassica oleracea HOM05D003618 ORTHO05D004302 6.9e-191 671.0 416 78.1
Lalb_Chr13g0297811 Lupinus albus HOM05D003618 ORTHO05D004302 6.9e-191 671.0 414 79.5
SGA_v2.0_scaffold90G27940 Striga asiatica HOM05D003618 ORTHO05D004302 6.9e-191 671.0 429 76.7
BcaC04g23393 Brassica carinata HOM05D003618 ORTHO05D004302 8.9e-191 670.6 416 78.1
AL8G39750 Arabidopsis lyrata HOM05D003618 ORTHO05D004302 1.5e-190 669.8 436 75.0
TAR629G0089 Trochodendron aralioides HOM05D003618 ORTHO05D004302 1.5e-190 669.8 412 77.9
A09p07850 Brassica napus HOM05D003618 ORTHO05D004302 2.6e-190 669.1 416 77.9
Glyma.05G037500 Glycine max HOM05D003618 ORTHO05D004302 2.6e-190 669.1 427 76.8
ClCG06G017010 Citrullus lanatus HOM05D003618 ORTHO05D004302 3.4e-190 668.7 420 77.1
COL.COLO4_30036 Corchorus olitorius HOM05D003618 ORTHO05D004302 3.4e-190 668.7 416 78.6
Manes.06G104700 Manihot esculenta HOM05D003618 ORTHO05D004302 3.4e-190 668.7 417 77.9
Cc04_g14010 Coffea canephora HOM05D003618 ORTHO05D004302 4.4e-190 668.3 425 76.7
GSVIVG01007752001 Vitis vinifera HOM05D003618 ORTHO05D004302 4.4e-190 668.3 421 76.7
Carub.0008s2351 Capsella rubella HOM05D003618 ORTHO05D004302 5.8e-190 667.9 420 76.9
Manes.14G065900 Manihot esculenta HOM05D003618 ORTHO05D004302 5.8e-190 667.9 431 76.6
BcaC01g02522 Brassica carinata HOM05D003618 ORTHO05D004302 9.9e-190 667.2 404 79.2
C03p63940 Brassica napus HOM05D003618 ORTHO05D004302 9.9e-190 667.2 404 79.2
BolC3t18648H Brassica oleracea HOM05D003618 ORTHO05D004302 9.9e-190 667.2 404 79.2
Ca_21917_v3 Cicer arietinum L. HOM05D003618 ORTHO05D004302 9.9e-190 667.2 415 78.3
Oeu035988.1 Olea europaea HOM05D003618 ORTHO05D004302 9.9e-190 667.2 406 80.3
Gohir.A09G171800 Gossypium hirsutum HOM05D003618 ORTHO05D004302 1.3e-189 666.8 409 79.0
Lalb_Chr07g0182731 Lupinus albus HOM05D003618 ORTHO05D004302 1.3e-189 666.8 409 79.0
Medtr4g106870 Medicago truncatula HOM05D003618 ORTHO05D004302 1.3e-189 666.8 412 78.2
Sed0001158 Sechium edule HOM05D003618 ORTHO05D004302 1.3e-189 666.8 427 76.6
unitig_0.g1445 Utricularia gibba HOM05D003618 ORTHO05D004302 1.3e-189 666.8 423 77.5
AT5G62790 Arabidopsis thaliana HOM05D003618 ORTHO05D004302 1.7e-189 666.4 406 79.1
SMO348G0015 Selaginella moellendorffii HOM05D003618 ORTHO05D004302 1.7e-189 666.4 464 71.6
VMungo1215G2328 Vigna mungo HOM05D003618 ORTHO05D004302 1.7e-189 666.4 412 78.6
Gorai.006G189200 Gossypium raimondii HOM05D003618 ORTHO05D004302 2.2e-189 666.0 409 79.0
Phvul.003G200300 Phaseolus vulgaris HOM05D003618 ORTHO05D004302 2.2e-189 666.0 412 78.6
Sed0011107 Sechium edule HOM05D003618 ORTHO05D004302 2.2e-189 666.0 417 78.4
Gohir.D09G167500 Gossypium hirsutum HOM05D003618 ORTHO05D004302 4.9e-189 664.8 409 78.5
HanXRQChr05g0153451 Helianthus annuus HOM05D003618 ORTHO05D004302 4.9e-189 664.8 427 75.9
Lsat_1_v5_gn_4_75261 Lactuca sativa HOM05D003618 ORTHO05D004302 4.9e-189 664.8 448 73.4
ECA232G0993 Erigeron canadensis HOM05D003618 ORTHO05D004302 6.4e-189 664.5 474 71.5
CANSAT80G1130 Cannabis sativa HOM05D003618 ORTHO05D004302 8.4e-189 664.1 419 75.9
Lsat_1_v5_gn_5_14440 Lactuca sativa HOM05D003618 ORTHO05D004302 8.4e-189 664.1 416 76.9
MSTRG.23128 Avicennia marina HOM05D003618 ORTHO05D004302 1.1e-188 663.7 470 71.3
BraA06t25902Z Brassica rapa HOM05D003618 ORTHO05D004302 1.1e-188 663.7 456 72.6
Os01g0106900 Oryza sativa ssp. japonica HOM05D003618 ORTHO05D004302 1.1e-188 663.7 409 78.7
Atru.chr9.2476 Acer truncatum HOM05D003618 ORTHO05D004302 1.4e-188 663.3 458 73.6
Actinidia19319 Actinidia chinensis HOM05D003618 ORTHO05D004302 1.4e-188 663.3 419 77.6
MELO3C026292.2 Cucumis melo HOM05D003618 ORTHO05D004302 1.4e-188 663.3 420 77.1
CDE07G0194 Ceratophyllum demersum HOM05D003618 ORTHO05D004302 1.9e-188 662.9 415 77.3
Sabra15G0101400 Salix brachista HOM05D003618 ORTHO05D004302 1.9e-188 662.9 409 78.7
TWI14G0558 Tripterygium wilfordii HOM05D003618 ORTHO05D004302 1.9e-188 662.9 445 74.6
PSO170G5081 Papaver somniferum HOM05D003618 ORTHO05D004302 2.4e-188 662.5 413 77.2
Ciclev10020004m.g Citrus clementina HOM05D003618 ORTHO05D004302 3.2e-188 662.1 458 72.3
SalBow5G0347 Salvia bowleyana HOM05D003618 ORTHO05D004302 3.2e-188 662.1 417 77.7
SalBow5G5681 Salvia bowleyana HOM05D003618 ORTHO05D004302 3.2e-188 662.1 417 77.7
MSTRG.11450 Avicennia marina HOM05D003618 ORTHO05D004302 4.2e-188 661.8 457 73.3
Psat4g058000 Pisum sativum HOM05D003618 ORTHO05D004302 4.2e-188 661.8 412 78.6
Thecc.03G012400 Theobroma cacao HOM05D003618 ORTHO05D004302 4.2e-188 661.8 406 79.6
TAR622G0131 Trochodendron aralioides HOM05D003618 ORTHO05D004302 4.2e-188 661.8 447 73.8
Potri.012G080900 Populus trichocarpa HOM05D003618 ORTHO05D004302 5.4e-188 661.4 409 78.2
CsaV3_1G001500 Cucumis sativus L. HOM05D003618 ORTHO05D004302 9.3e-188 660.6 420 76.4
Glyma.17G089600 Glycine max HOM05D003618 ORTHO05D004302 9.3e-188 660.6 415 77.1
PGR083G1520 Punica granatum HOM05D003618 ORTHO05D004302 9.3e-188 660.6 409 78.7
ATR0730G147 Amborella trichopoda HOM05D003618 ORTHO05D004302 1.2e-187 660.2 451 72.9
CSS0045852 Camellia sinensis var. sinensis HOM05D003618 ORTHO05D004302 1.6e-187 659.8 448 72.8
Duzib205G1198 Durio zibethinus HOM05D003618 ORTHO05D004302 2.1e-187 659.4 419 76.8
Gohir.A11G001200 Gossypium hirsutum HOM05D003618 ORTHO05D004302 2.1e-187 659.4 416 77.6
Lj4g0012807 Lotus japonicus HOM05D003618 ORTHO05D004302 2.1e-187 659.4 420 76.2
Oeu040829.1 Olea europaea HOM05D003618 ORTHO05D004302 2.1e-187 659.4 406 79.3
Zm00001eb126690 Zea mays HOM05D003618 ORTHO05D004302 2.1e-187 659.4 470 71.5
Lalb_Chr12g0201571 Lupinus albus HOM05D003618 ORTHO05D004302 2.7e-187 659.1 448 74.6
DCAR_026133 Daucus carota HOM05D003618 ORTHO05D004302 3.5e-187 658.7 463 70.8
Nn4g22770 Nelumbo nucifera HOM05D003618 ORTHO05D004302 4.6e-187 658.3 422 76.8
PSO455G0039 Papaver somniferum HOM05D003618 ORTHO05D004302 4.6e-187 658.3 420 75.2
Potri.015G076200 Populus trichocarpa HOM05D003618 ORTHO05D004302 6.0e-187 657.9 409 78.0
BraA09t36436Z Brassica rapa HOM05D003618 ORTHO05D004302 7.8e-187 657.5 439 74.0
FAN04G2056 Fragaria x ananassa HOM05D003618 ORTHO05D004302 1.3e-186 656.8 461 71.6
Migut.I00014 Erythranthe guttata HOM05D003618 ORTHO05D004302 1.7e-186 656.4 459 72.1
AUR62030965 Chenopodium quinoa HOM05D003618 ORTHO05D004302 6.6e-186 654.4 426 75.8
AUR62008212 Chenopodium quinoa HOM05D003618 ORTHO05D004302 8.7e-186 654.1 420 76.7
FAN13G0153 Fragaria x ananassa HOM05D003618 ORTHO05D004302 8.7e-186 654.1 461 71.1
HPP92_004862 Vanilla planifolia HOM05D003618 ORTHO05D004302 1.5e-185 653.3 406 78.1
vmacro19385 Vaccinium macrocarpon HOM05D003618 ORTHO05D004302 1.9e-185 652.9 437 74.1
FAN18G3061 Fragaria x ananassa HOM05D003618 ORTHO05D004302 2.5e-185 652.5 461 70.7
FAN08G0480 Fragaria x ananassa HOM05D003618 ORTHO05D004302 3.3e-185 652.1 461 71.1
Gorai.007G001700 Gossypium raimondii HOM05D003618 ORTHO05D004302 5.6e-185 651.4 411 77.1
Dinv20656 Davidia involucrata HOM05D003618 ORTHO05D004302 1.1e-183 647.1 450 72.2
Rhsim08G0171900 Rhododendron simsii HOM05D003618 ORTHO05D004302 5.3e-183 644.8 479 68.7
CANSAT80G1364 Cannabis sativa HOM05D003618 ORTHO05D004302 6.9e-183 644.4 420 73.3
Lj9A449G48 Lonicera japonica HOM05D003618 ORTHO05D004302 9.0e-183 644.0 460 70.7
Aa31LG11G890 Aethionema arabicum HOM05D003618 ORTHO05D004302 1.2e-182 643.7 407 77.4
Ah.11g051630 Amaranthus hybridus HOM05D003618 ORTHO05D004302 1.5e-182 643.3 409 77.5
Aa31LG11G900 Aethionema arabicum HOM05D003618 ORTHO05D004302 6.4e-181 637.9 407 76.7
Hund09436 Selenicereus undatus HOM05D003618 ORTHO05D004302 6.4e-181 637.9 430 71.4
Ciclev10019836m.g Citrus clementina HOM05D003618 ORTHO05D004302 7.1e-180 634.4 416 73.8
MBI16_g32207_MAGBIO Magnolia biondii HOM05D003618 ORTHO05D004302 9.3e-180 634.0 415 75.4
CBR_g11924 Chara braunii HOM05D003618 ORTHO05D004302 3.5e-179 632.1 415 74.9
MBI10_g14554_MAGBIO Magnolia biondii HOM05D003618 ORTHO05D004302 3.5e-179 632.1 415 75.9
Phvul.010G023000 Phaseolus vulgaris HOM05D003618 ORTHO05D004302 3.0e-178 629.0 412 74.3
arahy.Tifrunner.gnm1.ann1.5ZTX8H Arachis hypogaea HOM05D003618 ORTHO05D004302 1.5e-177 626.7 413 73.4
arahy.Tifrunner.gnm1.ann1.NJJ8BU Arachis hypogaea HOM05D003618 ORTHO05D004302 2.5e-177 625.9 413 73.1
Ca_23215_v3 Cicer arietinum L. HOM05D003618 ORTHO05D004302 3.3e-177 625.5 421 72.9
VMungo0331G0859 Vigna mungo HOM05D003618 ORTHO05D004302 1.1e-175 620.5 417 73.1
Glyma.16G089000 Glycine max HOM05D003618 ORTHO05D004302 1.4e-175 620.2 412 73.1
Lalb_Chr12g0209981 Lupinus albus HOM05D003618 ORTHO05D004302 1.8e-175 619.8 421 71.3
Duzib068G0560 Durio zibethinus HOM05D003618 ORTHO05D004302 3.1e-175 619.0 382 78.8
Medtr8g012565 Medicago truncatula HOM05D003618 ORTHO05D004302 5.3e-175 618.2 416 72.6
PGSC0003DMG400024503 Solanum tuberosum HOM05D003618 ORTHO05D004302 9.0e-175 617.5 434 72.1
Lj3g0025861 Lotus japonicus HOM05D003618 ORTHO05D004302 1.5e-174 616.7 448 69.4
Cre12.g546050 Chlamydomonas reinhardtii HOM05D003618 ORTHO05D004302 7.6e-174 614.4 420 71.2
Cpa.g.sc76.64 Carica papaya HOM05D003618 ORTHO05D004302 1.3e-173 613.6 374 79.1
TPR.G31563 Trifolium pratense HOM05D003618 ORTHO05D004302 2.9e-173 612.5 447 68.5
MBI10_g41914_MAGBIO Magnolia biondii HOM05D003618 ORTHO05D004302 5.5e-172 608.2 415 74.0
SGA_v2.0_scaffold25G10843 Striga asiatica HOM05D003618 ORTHO05D004302 1.9e-161 573.2 417 69.5
HanXRQChr16g0517311 Helianthus annuus HOM05D003618 ORTHO05D004302 6.3e-160 568.2 422 65.6
CDE06G1773 Ceratophyllum demersum HOM05D003618 ORTHO05D004302 8.5e-157 557.8 449 65.7
Aa31sc1732G20 Aethionema arabicum HOM05D003618 ORTHO05D004302 9.3e-156 554.3 346 78.0
PRCOL_00002139 Prasinoderma coloniale HOM05D003618 ORTHO05D004302 1.3e-154 550.4 417 65.0
CAN.G781.11 Capsicum annuum HOM05D003618 ORTHO05D004302 8.7e-154 547.7 327 80.7
Aa31sc1732G10 Aethionema arabicum HOM05D003618 ORTHO05D004302 6.9e-151 538.1 324 79.9
Dinv02897 Davidia involucrata HOM05D003618 ORTHO05D004302 1.4e-148 530.4 321 80.7
HanXRQChr05g0156211 Helianthus annuus HOM05D003618 ORTHO05D004302 1.9e-148 530.0 341 75.7
MCO15G646 Micromonas commoda HOM05D003618 ORTHO05D004302 1.0e-133 481.1 358 64.8
Sabra12G0057700 Salix brachista HOM05D003618 ORTHO05D004302 1.6e-131 473.8 421 61.5
AagrBONN_evm.TU.Sc2ySwM_228.1199 Anthoceros agrestis HOM05D003618 ORTHO05D004302 8.0e-131 471.5 341 73.6
Cc00_g09910 Coffea canephora HOM05D003618 ORTHO05D004302 3.5e-126 456.1 305 73.1
Sc12g0005340 Simmondsia chinensis HOM05D003618 ORTHO05D004302 4.9e-104 382.5 237 80.6
Psat4g204400 Pisum sativum HOM05D003618 ORTHO05D004302 4.1e-95 352.8 247 70.0
Gohir.D11G000766 Gossypium hirsutum HOM05D003618 ORTHO05D004302 1.6e-83 314.3 189 77.8
Actinidia33067 Actinidia chinensis HOM05D003618 ORTHO05D004302 1.8e-82 310.8 208 75.5
Zm00001eb334380 Zea mays HOM05D003618 ORTHO05D004302 2.9e-80 303.5 184 77.2
FvH4_4g01210 Fragaria vesca HOM05D003618 ORTHO05D004302 9.6e-76 288.5 263 60.1
Sc12g0005330 Simmondsia chinensis HOM05D003618 ORTHO05D004302 9.0e-74 282.0 176 73.3
Zm00001eb334370 Zea mays HOM05D003618 ORTHO05D004302 3.3e-68 263.5 173 76.3
Cc04_g14070 Coffea canephora HOM05D003618 ORTHO05D004302 1.4e-63 248.1 222 60.8
Lsat_1_v5_gn_0_46101 Lactuca sativa HOM05D003618 ORTHO05D004302 4.6e-62 243.0 363 39.1
VMungo0647G0692 Vigna mungo HOM05D003618 ORTHO05D004302 5.6e-60 236.1 158 75.3
Gohir.D11G000832 Gossypium hirsutum HOM05D003618 ORTHO05D004302 3.7e-59 233.4 164 71.3
Hund09437 Selenicereus undatus HOM05D003618 ORTHO05D004302 4.0e-58 229.9 385 40.5
FvH4_3g27741 Fragaria vesca HOM05D003618 ORTHO05D004302 9.6e-52 208.8 147 73.5
FvH4_1g09716 Fragaria vesca HOM05D003618 ORTHO05D004302 4.5e-41 173.3 153 63.4
FvH4_1g09717 Fragaria vesca HOM05D003618 ORTHO05D004302 9.4e-31 139.0 71 90.1
DCAR_016639 Daucus carota HOM05D003618 ORTHO05D003669 5.3e-26 123.2 75 80.0
RcHm_v2.0_Chr1g0360281 Rosa chinensis HOM05D003618 ORTHO05D004302 6.3e-19 99.8 73 68.5
RcHm_v2.0_Chr2g0151191 Rosa chinensis HOM05D001812 ORTHO05D004302 3.5e-17 94.0 73 64.4
FAN09G3822 Fragaria x ananassa HOM05D003618 ORTHO05D004302 7.2e-15 86.3 125 43.2
Cc00_g21160 Coffea canephora HOM05D003618 ORTHO05D153345 1.2e-12 79.0 47 74.5
Hma1.2p1_0549F.1_g176800 Hydrangea macrophylla HOM05D003618 ORTHO05D004302 2.6e-12 77.8 49 79.6
Cc00_g09880 Coffea canephora HOM05D003618 ORTHO05D004302 3.7e-11 73.9 37 89.2
SGA_v2.0_scaffold45G17201 Striga asiatica HOM05D003618 ORTHO05D404764 2.7e-09 67.8 148 39.9


User provided reference genes

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