Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c24_7070 Physcomitrium patens HOM05D005168 ORTHO05D006358 7.4e-89 330.5 163 100.0
AagrBONN_evm.TU.Sc2ySwM_368.3393 Anthoceros agrestis HOM05D005168 ORTHO05D006358 3.4e-41 172.2 161 52.2
Mapoly0043s0107 Marchantia polymorpha HOM05D005168 ORTHO05D006358 2.7e-38 162.5 160 51.9
SEGI_04309 Sequoiadendron giganteum HOM05D005168 ORTHO05D006358 2.5e-28 129.4 153 43.1
Nn3g19859 Nelumbo nucifera HOM05D005168 ORTHO05D006358 1.4e-26 123.6 155 43.9
Os03g0711700 Oryza sativa ssp. japonica HOM05D005168 ORTHO05D006358 2.0e-25 119.8 158 42.4
TAR622G0958 Trochodendron aralioides HOM05D005168 ORTHO05D006358 4.4e-25 118.6 154 40.9
CDE11G0347 Ceratophyllum demersum HOM05D005168 ORTHO05D006358 1.7e-24 116.7 155 41.3
PSO541G4324 Papaver somniferum HOM05D005168 ORTHO05D006358 4.1e-23 112.1 155 39.4
PSO675G5410 Papaver somniferum HOM05D005168 ORTHO05D006358 4.1e-23 112.1 155 39.4
SMO351G0141 Selaginella moellendorffii HOM05D005168 ORTHO05D006358 4.1e-23 112.1 155 41.9
ATR0057G015 Amborella trichopoda HOM05D005168 ORTHO05D006358 1.1e-20 104.0 89 53.9
CBR_g23850 Chara braunii HOM05D005168 ORTHO05D006358 4.3e-20 102.1 78 61.5
HPP92_028162 Vanilla planifolia HOM05D005168 ORTHO05D006358 9.5e-20 100.9 102 50.0
vmacro04368 Vaccinium macrocarpon HOM05D005168 ORTHO05D006358 3.6e-19 99.0 161 34.8
GSVIVG01009945001 Vitis vinifera HOM05D005168 ORTHO05D006358 4.7e-19 98.6 156 35.3
TWI56G1449 Tripterygium wilfordii HOM05D005168 ORTHO05D006358 8.0e-19 97.8 154 33.8
Psat5g045240 Pisum sativum HOM05D005168 ORTHO05D006358 8.9e-18 94.4 154 32.5
Actinidia37940 Actinidia chinensis HOM05D005168 ORTHO05D006358 1.5e-17 93.6 155 34.2
CiPaw.07G147200 Carya illinoinensis HOM05D005168 ORTHO05D006358 4.4e-17 92.0 151 34.4
Ca_00384_v3 Cicer arietinum L. HOM05D005168 ORTHO05D006358 4.4e-17 92.0 154 33.1
Lalb_Chr11g0067001 Lupinus albus HOM05D005168 ORTHO05D006358 4.4e-17 92.0 154 33.1
MSTRG.22344 Avicennia marina HOM05D005168 ORTHO05D006358 9.8e-17 90.9 161 33.5
CDE09G0329 Ceratophyllum demersum HOM05D005168 ORTHO05D006358 9.8e-17 90.9 77 58.4
Lj1g0018211 Lotus japonicus HOM05D005168 ORTHO05D006358 1.3e-16 90.5 155 31.6
Aa31LG4G6030 Aethionema arabicum HOM05D005168 ORTHO05D006358 1.7e-16 90.1 160 33.8
Medtr3g102420 Medicago truncatula HOM05D005168 ORTHO05D006358 1.7e-16 90.1 154 33.1
Hma1.2p1_0733F.1_g210170 Hydrangea macrophylla HOM05D005168 ORTHO05D006358 2.9e-16 89.4 155 34.8
CSS0038486 Camellia sinensis var. sinensis HOM05D005168 ORTHO05D006358 3.7e-16 89.0 155 33.5
SalBow8G1113 Salvia bowleyana HOM05D005168 ORTHO05D006358 4.9e-16 88.6 161 32.3
CSS0004439 Camellia sinensis var. sinensis HOM05D005168 ORTHO05D006358 6.4e-16 88.2 155 32.9
QL01p031168 Quercus lobata HOM05D005168 ORTHO05D006358 6.4e-16 88.2 154 31.8
Gohir.A06G002600 Gossypium hirsutum HOM05D005168 ORTHO05D006358 1.1e-15 87.4 156 32.7
Gohir.D06G005600 Gossypium hirsutum HOM05D005168 ORTHO05D006358 1.1e-15 87.4 156 32.7
Gorai.010G002800 Gossypium raimondii HOM05D005168 ORTHO05D006358 1.1e-15 87.4 156 32.7
CANSAT11G0916 Cannabis sativa HOM05D005168 ORTHO05D006358 1.4e-15 87.0 154 31.8
MELO3C011355.2 Cucumis melo HOM05D005168 ORTHO05D006358 1.4e-15 87.0 153 32.0
Thecc.08G047200 Theobroma cacao HOM05D005168 ORTHO05D006358 1.9e-15 86.7 156 33.3
Lsat_1_v5_gn_2_14120 Lactuca sativa HOM05D005168 ORTHO05D006358 2.4e-15 86.3 155 30.3
unitig_22.g6797 Utricularia gibba HOM05D005168 ORTHO05D006358 2.4e-15 86.3 161 30.4
Zm00001eb054840 Zea mays HOM05D005168 ORTHO05D006358 2.4e-15 86.3 153 34.0
Thhalv10019327m.g Eutrema salsugineum HOM05D005168 ORTHO05D006358 3.2e-15 85.9 150 33.3
Phvul.001G175600 Phaseolus vulgaris HOM05D005168 ORTHO05D006358 3.2e-15 85.9 158 31.0
ECA238G1857 Erigeron canadensis HOM05D005168 ORTHO05D006358 4.1e-15 85.5 155 32.9
Manes.14G063600 Manihot esculenta HOM05D005168 ORTHO05D006358 4.1e-15 85.5 151 33.1
Haze_17776 Corylus avellana HOM05D005168 ORTHO05D006358 5.4e-15 85.1 155 31.6
Haze_22662 Corylus avellana HOM05D005168 ORTHO05D006358 5.4e-15 85.1 155 31.6
Eucgr.C01258 Eucalyptus grandis HOM05D005168 ORTHO05D006358 5.4e-15 85.1 154 33.1
Cfa012889 Carpinus fangiana HOM05D005168 ORTHO05D006358 7.0e-15 84.7 155 31.6
Eucgr.H00960 Eucalyptus grandis HOM05D005168 ORTHO05D006358 7.0e-15 84.7 154 33.8
MD08G1010500 Malus domestica HOM05D005168 ORTHO05D006358 7.0e-15 84.7 151 32.5
SGA_v2.0_scaffold47G17500 Striga asiatica HOM05D005168 ORTHO05D006358 7.0e-15 84.7 154 31.2
Thhalv10009132m.g Eutrema salsugineum HOM05D005168 ORTHO05D006358 9.2e-15 84.3 150 32.7
Glyma.03G178900 Glycine max HOM05D005168 ORTHO05D006358 9.2e-15 84.3 158 29.7
SGA_v2.0_scaffold19G08553 Striga asiatica HOM05D005168 ORTHO05D006358 9.2e-15 84.3 154 31.2
CsaV3_2G024260 Cucumis sativus L. HOM05D005168 ORTHO05D006358 1.2e-14 84.0 153 31.4
HanXRQChr04g0101211 Helianthus annuus HOM05D005168 ORTHO05D006358 1.2e-14 84.0 159 30.8
MCO15G369 Micromonas commoda HOM05D005168 ORTHO05D006358 1.2e-14 84.0 151 37.7
Cre01.g018000 Chlamydomonas reinhardtii HOM05D005168 ORTHO05D006358 1.6e-14 83.6 80 48.8
AT3G25940 Arabidopsis thaliana HOM05D005168 ORTHO05D006358 2.0e-14 83.2 154 31.8
PGR031G0142 Punica granatum HOM05D005168 ORTHO05D006358 2.0e-14 83.2 154 31.2
BolC5t30566H Brassica oleracea HOM05D005168 ORTHO05D006358 2.7e-14 82.8 150 30.7
BraA06t24725Z Brassica rapa HOM05D005168 ORTHO05D006358 2.7e-14 82.8 150 30.7
Duzib093G1099 Durio zibethinus HOM05D005168 ORTHO05D006358 2.7e-14 82.8 156 33.3
THA.LOC104825467 Tarenaya hassleriana HOM05D005168 ORTHO05D006358 2.7e-14 82.8 154 33.1
BcaB03g14336 Brassica carinata HOM05D005168 ORTHO05D006358 3.5e-14 82.4 150 31.3
BcaB03g14344 Brassica carinata HOM05D005168 ORTHO05D006358 3.5e-14 82.4 150 31.3
BcaC05g25900 Brassica carinata HOM05D005168 ORTHO05D006358 3.5e-14 82.4 150 30.7
C05p18550 Brassica napus HOM05D005168 ORTHO05D006358 3.5e-14 82.4 150 30.7
C07p23400 Brassica napus HOM05D005168 ORTHO05D006358 3.5e-14 82.4 150 31.3
BolC7t42872H Brassica oleracea HOM05D005168 ORTHO05D006358 3.5e-14 82.4 150 31.3
Sp1g17830 Schrenkiella parvula HOM05D005168 ORTHO05D006358 4.6e-14 82.0 150 31.3
Sc15g0004820 Simmondsia chinensis HOM05D005168 ORTHO05D006358 4.6e-14 82.0 157 31.8
AL5G14600 Arabidopsis lyrata HOM05D005168 ORTHO05D006358 6.0e-14 81.6 150 32.0
A07p16030 Brassica napus HOM05D005168 ORTHO05D006358 6.0e-14 81.6 150 31.3
BraA07t29331Z Brassica rapa HOM05D005168 ORTHO05D006358 6.0e-14 81.6 150 31.3
Carub.0005s0380 Capsella rubella HOM05D005168 ORTHO05D006358 6.0e-14 81.6 155 29.7
Rhsim07G0250400 Rhododendron simsii HOM05D005168 ORTHO05D006358 6.0e-14 81.6 155 31.0
THA.LOC104825468 Tarenaya hassleriana HOM05D005168 ORTHO05D006358 6.0e-14 81.6 150 32.0
VMungo1080G1160 Vigna mungo HOM05D005168 ORTHO05D006358 7.8e-14 81.3 150 31.3
CARHR020540 Cardamine hirsuta HOM05D005168 ORTHO05D006358 1.0e-13 80.9 154 31.2
Migut.N03173 Erythranthe guttata HOM05D005168 ORTHO05D006358 1.0e-13 80.9 161 30.4
Atru.chr1.3654 Acer truncatum HOM05D005168 ORTHO05D006358 1.3e-13 80.5 156 31.4
BcaB07g32021 Brassica carinata HOM05D005168 ORTHO05D006358 1.3e-13 80.5 150 30.0
Cc10_g01450 Coffea canephora HOM05D005168 ORTHO05D006358 1.3e-13 80.5 155 31.0
Sed0007604 Sechium edule HOM05D005168 ORTHO05D006358 1.3e-13 80.5 155 29.7
A06p16200 Brassica napus HOM05D005168 ORTHO05D006358 1.7e-13 80.1 150 30.7
CARHR146930 Cardamine hirsuta HOM05D005168 ORTHO05D006358 1.7e-13 80.1 150 30.7
Cpa.g.sc58.102 Carica papaya HOM05D005168 ORTHO05D006358 2.3e-13 79.7 152 31.6
Nitab4.5_0000337g0010 Nicotiana tabacum HOM05D005168 ORTHO05D006358 2.3e-13 79.7 155 30.3
THA.LOC104811420 Tarenaya hassleriana HOM05D005168 ORTHO05D006358 2.3e-13 79.7 150 32.0
Aqoxy2G01931 Aquilegia oxysepala HOM05D005168 ORTHO05D006358 3.0e-13 79.3 162 34.6
arahy.Tifrunner.gnm1.ann1.GU7A1M Arachis hypogaea HOM05D005168 ORTHO05D006358 3.0e-13 79.3 164 30.5
Nitab4.5_0003251g0060 Nicotiana tabacum HOM05D005168 ORTHO05D006358 3.0e-13 79.3 155 30.3
arahy.Tifrunner.gnm1.ann1.TKX6L5 Arachis hypogaea HOM05D005168 ORTHO05D006358 5.0e-13 78.6 164 28.7
DCAR_015742 Daucus carota HOM05D005168 ORTHO05D006358 8.6e-13 77.8 156 30.1
Peaxi162Scf00553g00216 Petunia axillaris HOM05D005168 ORTHO05D006358 8.6e-13 77.8 155 30.3
Hund09202 Selenicereus undatus HOM05D005168 ORTHO05D006358 1.1e-12 77.4 156 30.8
Prupe.6G147400 Prunus persica HOM05D005168 ORTHO05D006358 1.5e-12 77.0 156 28.2
CAN.G727.4 Capsicum annuum HOM05D005168 ORTHO05D006358 2.5e-12 76.3 155 29.7
Ciclev10003775m.g Citrus clementina HOM05D005168 ORTHO05D006358 3.3e-12 75.9 154 29.2
Solyc04g054510.4 Solanum lycopersicum HOM05D005168 ORTHO05D006358 4.3e-12 75.5 155 29.7
PGSC0003DMG400022038 Solanum tuberosum HOM05D005168 ORTHO05D006358 4.3e-12 75.5 155 29.7
EL10Ac1g02165 Beta vulgaris HOM05D005168 ORTHO05D006358 2.1e-11 73.2 156 28.2
Dinv40488 Davidia involucrata HOM05D005168 ORTHO05D006358 3.1e-10 69.3 144 31.2
Potri.013G015000 Populus trichocarpa HOM05D005168 ORTHO05D006358 3.1e-10 69.3 153 26.8
FvH4_1g24780 Fragaria vesca HOM05D005168 ORTHO05D006358 4.0e-10 68.9 164 26.8
RcHm_v2.0_Chr2g0124111 Rosa chinensis HOM05D005168 ORTHO05D006358 5.2e-10 68.6 164 26.8
Eucgr.F02832 Eucalyptus grandis HOM05D005168 ORTHO05D006358 8.9e-10 67.8 95 37.9
FAN23G3095 Fragaria x ananassa HOM05D005168 ORTHO05D006358 3.4e-09 65.9 164 26.2
Sopen04g024330 Solanum pennellii HOM05D005168 ORTHO05D006358 4.4e-09 65.5 147 28.6
TPR.G9182 Trifolium pratense HOM05D005168 ORTHO05D006358 1.1e-07 60.8 92 32.6
Lj4A21T59 Lonicera japonica HOM05D005168 ORTHO05D006358 7.1e-07 58.2 78 39.7
SEGI_40975 Sequoiadendron giganteum HOM05D005168 ORTHO05D006358 1.2e-06 57.4 68 41.2
FAN26G0870 Fragaria x ananassa HOM05D005168 ORTHO05D006358 4.6e-06 55.5 78 35.9
Ah.01g021000 Amaranthus hybridus HOM05D005168 ORTHO05D006358 7.8e-06 54.7 48 47.9
AUR62040557 Chenopodium quinoa HOM05D005168 ORTHO05D006358 7.8e-06 54.7 52 46.2


User provided reference genes

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