Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c24_6130 Physcomitrium patens HOM05D000861 ORTHO05D004749 4.1e-213 744.6 404 100.0
Mapoly0057s0035 Marchantia polymorpha HOM05D000861 ORTHO05D004749 6.9e-104 381.7 395 50.4
Pp3c13_13880 Physcomitrium patens HOM05D000861 ORTHO05D004749 2.9e-102 376.3 359 57.9
AagrBONN_evm.TU.Sc2ySwM_228.1074 Anthoceros agrestis HOM05D000861 ORTHO05D004749 2.4e-96 356.7 412 47.8
SEGI_19220 Sequoiadendron giganteum HOM05D000861 ORTHO05D004749 6.3e-73 278.9 323 46.4
SMO194G0050 Selaginella moellendorffii HOM05D000861 ORTHO05D004749 2.2e-70 270.4 314 44.6
SMO358G0316 Selaginella moellendorffii HOM05D000861 ORTHO05D004749 2.2e-70 270.4 314 44.6
CBR_g23522 Chara braunii HOM05D000861 ORTHO05D004749 5.5e-69 265.8 316 46.5
TAR636G3394 Trochodendron aralioides HOM05D000861 ORTHO05D004749 8.5e-62 241.9 314 40.8
Nn5g30627 Nelumbo nucifera HOM05D000861 ORTHO05D004749 3.2e-61 240.0 328 41.8
Dinv25026 Davidia involucrata HOM05D000861 ORTHO05D004749 5.5e-61 239.2 314 38.5
Rhsim10G0079800 Rhododendron simsii HOM05D000861 ORTHO05D004749 7.2e-61 238.8 314 40.4
Aqoxy4G02829 Aquilegia oxysepala HOM05D000861 ORTHO05D004749 3.6e-60 236.5 314 39.2
CANSAT54G1949 Cannabis sativa HOM05D000861 ORTHO05D004749 3.6e-60 236.5 318 37.4
Aqoxy2G01335 Aquilegia oxysepala HOM05D000861 ORTHO05D004749 1.0e-59 235.0 312 38.5
Glyma.02G168400 Glycine max HOM05D000861 ORTHO05D004749 1.4e-59 234.6 315 40.6
Psat1g222880 Pisum sativum HOM05D000861 ORTHO05D004749 2.3e-59 233.8 311 39.9
TPR.G29255 Trifolium pratense HOM05D000861 ORTHO05D004749 3.0e-59 233.4 314 39.2
Ca_00040_v3 Cicer arietinum L. HOM05D000861 ORTHO05D004749 4.0e-59 233.0 315 39.0
Psat6g110040 Pisum sativum HOM05D000861 ORTHO05D004749 4.0e-59 233.0 315 38.1
Potri.016G062900 Populus trichocarpa HOM05D000861 ORTHO05D004749 2.6e-58 230.3 313 39.0
FvH4_7g05020 Fragaria vesca HOM05D000861 ORTHO05D004749 3.4e-58 229.9 311 39.2
FAN01G1629 Fragaria x ananassa HOM05D000861 ORTHO05D004749 3.4e-58 229.9 311 39.2
RcHm_v2.0_Chr1g0331291 Rosa chinensis HOM05D000861 ORTHO05D004749 4.4e-58 229.6 311 39.5
TAR633G2067 Trochodendron aralioides HOM05D000861 ORTHO05D004749 4.4e-58 229.6 315 39.7
MELO3C009074.2 Cucumis melo HOM05D000861 ORTHO05D008567 5.7e-58 229.2 313 39.6
TPR.G2104 Trifolium pratense HOM05D000861 ORTHO05D004749 5.7e-58 229.2 314 38.5
Cc09_g02090 Coffea canephora HOM05D000861 ORTHO05D004749 7.5e-58 228.8 314 36.9
Manes.08G039800 Manihot esculenta HOM05D000861 ORTHO05D004749 7.5e-58 228.8 308 38.6
FAN06G3356 Fragaria x ananassa HOM05D000861 ORTHO05D004749 9.8e-58 228.4 311 38.9
Lj1A65T56 Lonicera japonica HOM05D000861 ORTHO05D004749 1.3e-57 228.0 311 38.3
MBI01_g21127_MAGBIO Magnolia biondii HOM05D000861 ORTHO05D004749 1.3e-57 228.0 315 36.8
Lj2A1153T47 Lonicera japonica HOM05D000861 ORTHO05D004749 1.7e-57 227.6 297 39.4
arahy.Tifrunner.gnm1.ann1.9W4D6L Arachis hypogaea HOM05D000861 ORTHO05D004749 2.2e-57 227.3 314 38.9
arahy.Tifrunner.gnm1.ann1.BI8ZDZ Arachis hypogaea HOM05D000861 ORTHO05D004749 2.2e-57 227.3 314 38.9
Lj1g0012940 Lotus japonicus HOM05D000861 ORTHO05D004749 2.2e-57 227.3 315 38.1
CsaV3_4G031490 Cucumis sativus L. HOM05D000861 ORTHO05D004749 2.8e-57 226.9 313 39.6
FAN10G0630 Fragaria x ananassa HOM05D000861 ORTHO05D004749 2.8e-57 226.9 312 38.5
CDE05G2486 Ceratophyllum demersum HOM05D000861 ORTHO05D004749 3.7e-57 226.5 314 37.9
TPR.G14497 Trifolium pratense HOM05D000861 ORTHO05D004749 8.3e-57 225.3 315 38.1
Hma1.2p1_0636F.1_g193240 Hydrangea macrophylla HOM05D000861 ORTHO05D004749 1.1e-56 224.9 296 37.5
Nn2g14698 Nelumbo nucifera HOM05D000861 ORTHO05D004749 2.4e-56 223.8 306 40.5
ATR0789G014 Amborella trichopoda HOM05D000861 ORTHO05D004749 3.1e-56 223.4 284 40.5
RcHm_v2.0_Chr1g0331341 Rosa chinensis HOM05D000861 ORTHO05D004749 3.1e-56 223.4 265 42.6
CSS0019173 Camellia sinensis var. sinensis HOM05D000861 ORTHO05D004749 4.1e-56 223.0 311 37.3
Haze_20079 Corylus avellana HOM05D000861 ORTHO05D004749 4.1e-56 223.0 314 39.2
PGR004G1046 Punica granatum HOM05D000861 ORTHO05D004749 4.1e-56 223.0 324 38.6
Haze_04427 Corylus avellana HOM05D000861 ORTHO05D004749 5.4e-56 222.6 312 38.5
Sabra16G0065200 Salix brachista HOM05D000861 ORTHO05D004749 1.2e-55 221.5 317 38.2
Lalb_Chr20g0111111 Lupinus albus HOM05D000861 ORTHO05D004749 1.6e-55 221.1 314 37.3
ClCG04G000550 Citrullus lanatus HOM05D000861 ORTHO05D004749 2.0e-55 220.7 350 36.3
Lalb_Chr25g0287681 Lupinus albus HOM05D000861 ORTHO05D004749 3.5e-55 219.9 317 37.5
VMungo0720G2154 Vigna mungo HOM05D000861 ORTHO05D004749 3.5e-55 219.9 314 38.2
Sp3g10170 Schrenkiella parvula HOM05D000861 ORTHO05D004749 4.5e-55 219.5 265 40.8
CSS0040474 Camellia sinensis var. sinensis HOM05D000861 ORTHO05D004749 7.7e-55 218.8 308 37.3
AUR62025238 Chenopodium quinoa HOM05D000861 ORTHO05D004749 7.7e-55 218.8 277 39.0
Manes.09G040600 Manihot esculenta HOM05D000861 ORTHO05D004749 7.7e-55 218.8 265 40.0
vmacro05483 Vaccinium macrocarpon HOM05D000861 ORTHO05D004749 7.7e-55 218.8 314 38.9
Glyma.03G206500 Glycine max HOM05D000861 ORTHO05D004749 1.0e-54 218.4 315 38.1
unitig_749.g14024 Utricularia gibba HOM05D000861 ORTHO05D004749 1.0e-54 218.4 286 37.8
Cfa006350 Carpinus fangiana HOM05D000861 ORTHO05D004749 1.3e-54 218.0 326 38.0
Migut.C01187 Erythranthe guttata HOM05D000861 ORTHO05D004749 2.3e-54 217.2 263 40.7
Sabra16G0064900 Salix brachista HOM05D000861 ORTHO05D004749 2.9e-54 216.9 288 39.9
Eucgr.A02509 Eucalyptus grandis HOM05D000861 ORTHO05D004749 3.8e-54 216.5 316 37.3
QL07p025600 Quercus lobata HOM05D000861 ORTHO05D004749 3.8e-54 216.5 312 38.5
TWI74G1428 Tripterygium wilfordii HOM05D000861 ORTHO05D004749 6.6e-54 215.7 311 38.3
Prupe.2G061200 Prunus persica HOM05D000861 ORTHO05D004749 1.5e-53 214.5 311 37.3
THA.LOC104826781 Tarenaya hassleriana HOM05D000861 ORTHO05D004749 1.5e-53 214.5 307 37.8
VMungo1383G1884 Vigna mungo HOM05D000861 ORTHO05D004749 1.9e-53 214.2 315 37.1
arahy.Tifrunner.gnm1.ann1.2N6KDB Arachis hypogaea HOM05D000861 ORTHO05D004749 2.5e-53 213.8 316 37.7
Medtr1g054715 Medicago truncatula HOM05D000861 ORTHO05D004749 2.5e-53 213.8 340 35.9
arahy.Tifrunner.gnm1.ann1.5F6CY5 Arachis hypogaea HOM05D000861 ORTHO05D004749 3.3e-53 213.4 316 37.3
ECA234G4058 Erigeron canadensis HOM05D000861 ORTHO05D004749 9.5e-53 211.8 312 34.9
BcaB06g25559 Brassica carinata HOM05D000861 ORTHO05D004749 1.2e-52 211.5 270 40.4
CiPaw.10G023500 Carya illinoinensis HOM05D000861 ORTHO05D004749 1.2e-52 211.5 311 38.3
CiPaw.09G025900 Carya illinoinensis HOM05D000861 ORTHO05D004749 1.6e-52 211.1 324 37.7
PGSC0003DMG400002212 Solanum tuberosum HOM05D000861 ORTHO05D004749 8.0e-52 208.8 308 34.4
Os02g0605500 Oryza sativa ssp. japonica HOM05D000861 ORTHO05D004749 1.0e-51 208.4 316 36.4
Ca_26442_v3 Cicer arietinum L. HOM05D000861 ORTHO05D004749 1.4e-51 208.0 318 37.1
Ciclev10012217m.g Citrus clementina HOM05D000861 ORTHO05D004749 1.8e-51 207.6 263 40.7
Glyma.19G204100 Glycine max HOM05D000861 ORTHO05D004749 2.3e-51 207.2 315 36.5
GSVIVG01033426001 Vitis vinifera HOM05D000861 ORTHO05D004749 3.0e-51 206.8 311 35.7
Sabra06G0151900 Salix brachista HOM05D000861 ORTHO05D004749 4.0e-51 206.5 263 37.6
Sopen04g019180 Solanum pennellii HOM05D000861 ORTHO05D004749 4.0e-51 206.5 308 34.4
Lalb_Chr01g0017651 Lupinus albus HOM05D000861 ORTHO05D004749 5.2e-51 206.1 317 35.3
HanXRQChr12g0359061 Helianthus annuus HOM05D000861 ORTHO05D004749 1.2e-50 204.9 312 34.3
Solyc04g049290.2 Solanum lycopersicum HOM05D000861 ORTHO05D004749 1.5e-50 204.5 308 34.4
PSO384G1311 Papaver somniferum HOM05D000861 ORTHO05D004749 2.6e-50 203.8 306 36.6
BcaB04g18704 Brassica carinata HOM05D000861 ORTHO05D004749 3.4e-50 203.4 241 43.6
Phvul.007G262800 Phaseolus vulgaris HOM05D000861 ORTHO05D004749 3.4e-50 203.4 314 36.6
BraA05t22541Z Brassica rapa HOM05D000861 ORTHO05D007385 1.3e-49 201.4 312 38.8
A05p37430 Brassica napus HOM05D000861 ORTHO05D007385 2.2e-49 200.7 312 38.8
Zm00001eb246660 Zea mays HOM05D000861 ORTHO05D004749 2.8e-49 200.3 317 34.4
AUR62028947 Chenopodium quinoa HOM05D000861 ORTHO05D004749 4.9e-49 199.5 277 36.5
EL10Ac8g19073 Beta vulgaris HOM05D000861 ORTHO05D004749 6.3e-49 199.1 299 36.1
Peaxi162Scf00072g00619 Petunia axillaris HOM05D000861 ORTHO05D004749 6.3e-49 199.1 308 35.1
SGA_v2.0_scaffold274G46507 Striga asiatica HOM05D000861 ORTHO05D004749 6.3e-49 199.1 309 35.3
BcaC05g29310 Brassica carinata HOM05D000861 ORTHO05D004749 8.3e-49 198.7 312 38.5
Nitab4.5_0000575g0240 Nicotiana tabacum HOM05D000861 ORTHO05D004749 1.4e-48 198.0 314 33.8
Lsat_1_v5_gn_2_66000 Lactuca sativa HOM05D000861 ORTHO05D004749 2.4e-48 197.2 337 32.3
C05p55990 Brassica napus HOM05D000861 ORTHO05D004749 7.0e-48 195.7 312 38.1
Dinv24029 Davidia involucrata HOM05D000861 ORTHO05D004749 7.8e-47 192.2 226 42.9
Peaxi162Scf00195g00910 Petunia axillaris HOM05D000861 ORTHO05D004749 7.8e-47 192.2 260 35.8
Sabra16G0065500 Salix brachista HOM05D000861 ORTHO05D004749 1.0e-46 191.8 320 35.0
SHI28323 Sapria himalayana HOM05D000861 ORTHO05D004749 1.3e-46 191.4 314 34.7
Nitab4.5_0008820g0010 Nicotiana tabacum HOM05D000861 ORTHO05D004749 3.8e-46 189.9 269 34.9
CAN.G186.36 Capsicum annuum HOM05D000861 ORTHO05D004749 1.1e-45 188.3 268 35.4
Sed0004581 Sechium edule HOM05D000861 ORTHO05D004749 5.6e-45 186.0 313 35.1
Hma1.2p1_0516F.1_g170530 Hydrangea macrophylla HOM05D000861 ORTHO05D004749 1.6e-44 184.5 315 34.3
PGSC0003DMG400016019 Solanum tuberosum HOM05D000861 ORTHO05D004749 2.1e-44 184.1 268 34.0
Phvul.001G200100 Phaseolus vulgaris HOM05D000861 ORTHO05D004749 3.0e-43 180.3 289 35.6
Nitab4.5_0007421g0010 Nicotiana tabacum HOM05D000861 ORTHO05D004749 4.0e-43 179.9 308 32.1
vmacro22548 Vaccinium macrocarpon HOM05D000861 ORTHO05D004749 2.0e-42 177.6 312 34.3
Sopen04g004750 Solanum pennellii HOM05D000861 ORTHO05D004749 2.6e-42 177.2 268 33.2
Solyc04g009600.3 Solanum lycopersicum HOM05D000861 ORTHO05D004749 4.4e-42 176.4 268 33.2
Aa31LG3G5570 Aethionema arabicum HOM05D000861 ORTHO05D004749 4.9e-41 172.9 271 35.8
Lj5g0002775 Lotus japonicus HOM05D000861 ORTHO05D004749 1.4e-40 171.4 323 31.0
PSO425G0018 Papaver somniferum HOM05D000861 ORTHO05D004749 1.9e-40 171.0 264 35.6
MD02G1263700 Malus domestica HOM05D000861 ORTHO05D004749 9.2e-40 168.7 311 32.5
CARHR086500 Cardamine hirsuta HOM05D000861 ORTHO05D004749 4.6e-39 166.4 265 34.7
DCAR_027450 Daucus carota HOM05D000861 ORTHO05D004749 6.0e-39 166.0 219 36.5
AL3G23550 Arabidopsis lyrata HOM05D000861 ORTHO05D004749 7.8e-39 165.6 265 34.3
MSTRG.26071 Avicennia marina HOM05D000861 ORTHO05D004749 7.8e-39 165.6 314 31.2
SMO361G0253 Selaginella moellendorffii HOM05D000861 ORTHO05D004749 1.3e-38 164.9 253 36.8
MD07G1054500 Malus domestica HOM05D000861 ORTHO05D004749 1.7e-38 164.5 311 31.5
Sc13g0002540 Simmondsia chinensis HOM05D000861 ORTHO05D004749 1.7e-38 164.5 265 33.6
AT3G11950 Arabidopsis thaliana HOM05D000861 ORTHO05D004749 2.3e-38 164.1 312 32.7
Carub.0003s1128 Capsella rubella HOM05D000861 ORTHO05D004749 6.6e-38 162.5 265 33.6
Duzib093G1597 Durio zibethinus HOM05D000861 ORTHO05D004749 6.6e-38 162.5 311 33.1
BcaC01g04070 Brassica carinata HOM05D000861 ORTHO05D007385 8.6e-38 162.2 305 34.1
BolC3t16804H Brassica oleracea HOM05D000861 ORTHO05D004749 8.6e-38 162.2 305 34.1
C03p45380 Brassica napus HOM05D000861 ORTHO05D004749 2.5e-37 160.6 305 33.4
Duzib128G1936 Durio zibethinus HOM05D000861 ORTHO05D004749 4.3e-37 159.8 285 33.3
Thhalv10020413m.g Eutrema salsugineum HOM05D000861 ORTHO05D004749 5.6e-37 159.5 265 33.6
Oeu022105.1 Olea europaea HOM05D000861 ORTHO05D004749 5.6e-37 159.5 312 31.1
Atru.chr8.1223 Acer truncatum HOM05D000861 ORTHO05D004749 7.3e-37 159.1 321 31.8
A03p37380 Brassica napus HOM05D000861 ORTHO05D004749 2.8e-36 157.1 266 33.5
BraA03t12899Z Brassica rapa HOM05D000861 ORTHO05D004749 2.8e-36 157.1 308 32.5
Gohir.D01G123600 Gossypium hirsutum HOM05D000861 ORTHO05D004749 2.8e-36 157.1 263 34.2
Oeu003219.1 Olea europaea HOM05D000861 ORTHO05D004749 3.6e-36 156.8 312 30.8
COL.COLO4_29438 Corchorus olitorius HOM05D000861 ORTHO05D004749 6.2e-36 156.0 263 35.0
Nitab4.5_0000691g0150 Nicotiana tabacum HOM05D000861 ORTHO05D004749 6.2e-36 156.0 266 31.6
Gohir.D09G126600 Gossypium hirsutum HOM05D000861 ORTHO05D004749 1.4e-35 154.8 217 37.8
Gohir.A01G136400 Gossypium hirsutum HOM05D000861 ORTHO05D004749 1.8e-35 154.5 263 33.8
Gorai.002G154600 Gossypium raimondii HOM05D000861 ORTHO05D004749 1.8e-35 154.5 263 33.8
Cpa.g.sc85.15 Carica papaya HOM05D000861 ORTHO05D004749 4.0e-35 153.3 226 37.6
Thecc.05G180600 Theobroma cacao HOM05D000861 ORTHO05D004749 5.2e-35 152.9 285 33.0
Zm00001eb195790 Zea mays HOM05D000861 ORTHO05D004749 1.2e-34 151.8 229 35.8
Gohir.A09G130700 Gossypium hirsutum HOM05D000861 ORTHO05D004749 4.4e-34 149.8 263 33.5
Oeu051191.1 Olea europaea HOM05D000861 ORTHO05D004749 1.7e-33 147.9 271 29.9
Os12g0181300 Oryza sativa ssp. japonica HOM05D000861 ORTHO05D004749 1.4e-32 144.8 229 35.8
Ah.09g231540 Amaranthus hybridus HOM05D000861 ORTHO05D004749 4.1e-32 143.3 264 30.3
Os04g0218900 Oryza sativa ssp. japonica HOM05D000861 ORTHO05D004749 1.6e-31 141.4 227 34.8
Zm00001eb093630 Zea mays HOM05D000861 ORTHO05D004749 6.0e-31 139.4 216 37.5
Os05g0305200 Oryza sativa ssp. japonica HOM05D000861 ORTHO05D004749 1.0e-30 138.7 188 38.8
HPP92_003821 Vanilla planifolia HOM05D000861 ORTHO05D004749 1.3e-30 138.3 188 37.8
Zm00001eb421970 Zea mays HOM05D000861 ORTHO05D004749 3.9e-30 136.7 210 33.3
HPP92_008306 Vanilla planifolia HOM05D000861 ORTHO05D004749 4.3e-29 133.3 187 35.8
Actinidia01592 Actinidia chinensis HOM05D000861 ORTHO05D004749 4.0e-27 126.7 187 34.2
Gorai.006G145500 Gossypium raimondii HOM05D000861 ORTHO05D004749 2.7e-23 114.0 217 32.3
MCO14G045 Micromonas commoda HOM05D000861 ORTHO05D004749 6.6e-22 109.4 177 34.5
Os04g0217900 Oryza sativa ssp. japonica HOM05D000861 ORTHO05D004749 5.2e-19 99.8 150 37.3
Actinidia17295 Actinidia chinensis HOM05D000861 ORTHO05D004749 3.4e-18 97.1 134 36.6
TAR626G0577 Trochodendron aralioides HOM05D000861 ORTHO05D003237 3.5e-15 87.0 124 40.3
HPP92_003796 Vanilla planifolia HOM05D000861 ORTHO05D004749 1.0e-14 85.5 139 36.7
SalBow6G1870 Salvia bowleyana HOM05D000861 ORTHO05D004749 5.1e-14 83.2 116 37.1
TAR626G1779 Trochodendron aralioides HOM05D000861 ORTHO05D004749 5.6e-13 79.7 116 41.4
PRCOL_00002048 Prasinoderma coloniale HOM05D000861 ORTHO05D004749 6.2e-12 76.3 195 26.2
Nitab4.5_0000691g0180 Nicotiana tabacum HOM05D000861 ORTHO05D004749 1.1e-11 75.5 170 26.5
TAR371G0304 Trochodendron aralioides HOM05D000861 ORTHO05D003237 1.5e-10 71.6 122 36.9
TAR375G0848 Trochodendron aralioides HOM05D000861 ORTHO05D004749 3.4e-10 70.5 83 39.8
RcHm_v2.0_Chr3g0486361 Rosa chinensis HOM05D000861 ORTHO05D004749 7.1e-08 62.8 68 39.7


User provided reference genes

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