Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c24_4650 Physcomitrium patens HOM05D002240 ORTHO05D002453 1.3e-57 226.1 107 100.0
AT5G35360 Arabidopsis thaliana HOM05D002240 ORTHO05D002453 2.9e-09 65.5 68 55.9
BcaC05g24909 Brassica carinata HOM05D002240 ORTHO05D002453 2.9e-09 65.5 75 53.3
BcaC07g41826 Brassica carinata HOM05D002240 ORTHO05D002453 4.9e-09 64.7 64 57.8
A09p65150 Brassica napus HOM05D002240 ORTHO05D002453 4.9e-09 64.7 64 57.8
BolC5t29587H Brassica oleracea HOM05D002240 ORTHO05D002453 4.9e-09 64.7 64 57.8
BolC8t52441H Brassica oleracea HOM05D002240 ORTHO05D002453 4.9e-09 64.7 64 57.8
BraA09t41858Z Brassica rapa HOM05D002240 ORTHO05D002453 4.9e-09 64.7 64 57.8
Pp3c8_7840 Physcomitrium patens HOM05D002240 ORTHO05D002453 4.9e-09 64.7 63 55.6
Sp1g08840 Schrenkiella parvula HOM05D002240 ORTHO05D002453 4.9e-09 64.7 64 57.8
SEGI_11787 Sequoiadendron giganteum HOM05D002240 ORTHO05D002453 4.9e-09 64.7 74 50.0
A06p06880 Brassica napus HOM05D002240 ORTHO05D002453 6.5e-09 64.3 64 57.8
C05p08360 Brassica napus HOM05D002240 ORTHO05D002453 6.5e-09 64.3 74 52.7
BraA06t23903Z Brassica rapa HOM05D002240 ORTHO05D002453 6.5e-09 64.3 64 57.8
Carub.0007s3118 Capsella rubella HOM05D002240 ORTHO05D002453 6.5e-09 64.3 64 57.8
CARHR103920 Cardamine hirsuta HOM05D002240 ORTHO05D002453 6.5e-09 64.3 68 54.4
Thhalv10002478m.g Eutrema salsugineum HOM05D002240 ORTHO05D002453 6.5e-09 64.3 68 54.4
THA.LOC104808914 Tarenaya hassleriana HOM05D002240 ORTHO05D002453 6.5e-09 64.3 68 54.4
Actinidia07947 Actinidia chinensis HOM05D002240 ORTHO05D002453 8.4e-09 63.9 97 42.3
Lalb_Chr05g0223751 Lupinus albus HOM05D002240 ORTHO05D002453 8.4e-09 63.9 83 45.8
Mapoly0060s0013 Marchantia polymorpha HOM05D002240 ORTHO05D002453 8.4e-09 63.9 59 59.3
Pp3c24_4640 Physcomitrium patens HOM05D002240 ORTHO05D002453 8.4e-09 63.9 63 55.6
Aa31sc435G10 Aethionema arabicum HOM05D002240 ORTHO05D002453 1.1e-08 63.5 68 52.9
BcaB08g37338 Brassica carinata HOM05D002240 ORTHO05D002453 1.1e-08 63.5 60 60.0
C08p49090 Brassica napus HOM05D002240 ORTHO05D002453 1.1e-08 63.5 64 56.2
CBR_g39915 Chara braunii HOM05D000019 ORTHO05D002453 1.1e-08 63.5 59 57.6
Lj4g0013389 Lotus japonicus HOM05D002240 ORTHO05D002453 1.1e-08 63.5 89 46.1
PSO541G3805 Papaver somniferum HOM05D002240 ORTHO05D002453 1.1e-08 63.5 60 60.0
PSO675G0044 Papaver somniferum HOM05D002240 ORTHO05D002453 1.1e-08 63.5 60 60.0
Pp3c8_7820 Physcomitrium patens HOM05D002240 ORTHO05D002453 1.1e-08 63.5 59 59.3
THA.LOC104815314 Tarenaya hassleriana HOM05D002240 ORTHO05D002453 1.1e-08 63.5 60 60.0
Aqoxy7G02663 Aquilegia oxysepala HOM05D002240 ORTHO05D002453 1.9e-08 62.8 57 61.4
CDE06G1990 Ceratophyllum demersum HOM05D002240 ORTHO05D002453 1.9e-08 62.8 57 61.4
CBR_g38682 Chara braunii HOM05D002240 ORTHO05D002453 1.9e-08 62.8 59 55.9
Nn2g15111 Nelumbo nucifera HOM05D002240 ORTHO05D002453 1.9e-08 62.8 57 61.4
TAR383G0070 Trochodendron aralioides HOM05D002240 ORTHO05D002453 1.9e-08 62.8 57 61.4
unitig_52.g17303 Utricularia gibba HOM05D002240 ORTHO05D002453 1.9e-08 62.8 68 51.5
ATR0307G055 Amborella trichopoda HOM05D002240 ORTHO05D002453 2.5e-08 62.4 57 61.4
CANSAT01G1996 Cannabis sativa HOM05D002240 ORTHO05D002453 2.5e-08 62.4 57 59.6
CAN.G282.42 Capsicum annuum HOM05D002240 ORTHO05D002453 2.5e-08 62.4 100 42.0
DCAR_002610 Daucus carota HOM05D002240 ORTHO05D002453 2.5e-08 62.4 60 58.3
DCAR_023483 Daucus carota HOM05D002240 ORTHO05D002453 2.5e-08 62.4 60 58.3
Dinv17652 Davidia involucrata HOM05D002240 ORTHO05D002453 2.5e-08 62.4 60 58.3
Lalb_Chr09g0331941 Lupinus albus HOM05D002240 ORTHO05D002453 2.5e-08 62.4 80 50.0
MBI13_g34301_MAGBIO Magnolia biondii HOM05D002240 ORTHO05D002453 2.5e-08 62.4 57 61.4
SalBow2G0323 Salvia bowleyana HOM05D002240 ORTHO05D002453 2.5e-08 62.4 60 58.3
TAR636G1564 Trochodendron aralioides HOM05D002240 ORTHO05D002453 2.5e-08 62.4 57 61.4
Glyma.05G221100 Glycine max HOM05D002240 ORTHO05D002453 3.2e-08 62.0 60 56.7
Glyma.08G027600 Glycine max HOM05D002240 ORTHO05D002453 3.2e-08 62.0 60 56.7
Atru.chr13.1539 Acer truncatum HOM05D002240 ORTHO05D002453 4.2e-08 61.6 57 59.6
Ah.14g085800 Amaranthus hybridus HOM05D002240 ORTHO05D002453 4.2e-08 61.6 57 59.6
arahy.Tifrunner.gnm1.ann1.1S754L Arachis hypogaea HOM05D002240 ORTHO05D002453 4.2e-08 61.6 57 59.6
arahy.Tifrunner.gnm1.ann1.58VMN1 Arachis hypogaea HOM05D002240 ORTHO05D002453 4.2e-08 61.6 57 59.6
arahy.Tifrunner.gnm1.ann1.7FW3W7 Arachis hypogaea HOM05D002240 ORTHO05D002453 4.2e-08 61.6 57 59.6
CSS0010765 Camellia sinensis var. sinensis HOM05D002240 ORTHO05D002453 4.2e-08 61.6 57 59.6
CSS0038655 Camellia sinensis var. sinensis HOM05D002240 ORTHO05D002453 4.2e-08 61.6 57 59.6
Cpa.g.sc115.27 Carica papaya HOM05D002240 ORTHO05D002453 4.2e-08 61.6 57 59.6
CiPaw.15G156400 Carya illinoinensis HOM05D002240 ORTHO05D002453 4.2e-08 61.6 57 59.6
Ciclev10007954m.g Citrus clementina HOM05D002240 ORTHO05D002453 4.2e-08 61.6 57 59.6
Dinv07496 Davidia involucrata HOM05D002240 ORTHO05D002453 4.2e-08 61.6 57 59.6
Duzib168G0971 Durio zibethinus HOM05D002240 ORTHO05D002453 4.2e-08 61.6 57 59.6
Migut.E00675 Erythranthe guttata HOM05D002240 ORTHO05D002453 4.2e-08 61.6 57 59.6
Eucgr.C02177 Eucalyptus grandis HOM05D002240 ORTHO05D002453 4.2e-08 61.6 57 59.6
Gohir.A02G087400 Gossypium hirsutum HOM05D002240 ORTHO05D002453 4.2e-08 61.6 57 59.6
Gohir.D02G102300 Gossypium hirsutum HOM05D002240 ORTHO05D002453 4.2e-08 61.6 57 59.6
Gohir.D03G147600 Gossypium hirsutum HOM05D002240 ORTHO05D002453 4.2e-08 61.6 57 59.6
Gorai.003G155100 Gossypium raimondii HOM05D002240 ORTHO05D002453 4.2e-08 61.6 57 59.6
Gorai.005G116100 Gossypium raimondii HOM05D002240 ORTHO05D002453 4.2e-08 61.6 57 59.6
HanXRQChr17g0565491 Helianthus annuus HOM05D002240 ORTHO05D002453 4.2e-08 61.6 57 59.6
Hma1.2p1_0513F.1_g169500 Hydrangea macrophylla HOM05D002240 ORTHO05D002453 4.2e-08 61.6 57 59.6
Lj6C712T5 Lonicera japonica HOM05D002240 ORTHO05D002453 4.2e-08 61.6 57 59.6
Nitab4.5_0000069g0080 Nicotiana tabacum HOM05D002240 ORTHO05D002453 4.2e-08 61.6 57 59.6
Nitab4.5_0009336g0010 Nicotiana tabacum HOM05D002240 ORTHO05D002453 4.2e-08 61.6 57 59.6
Oeu026900.3 Olea europaea HOM05D002240 ORTHO05D002453 4.2e-08 61.6 57 59.6
Peaxi162Scf00021g02414 Petunia axillaris HOM05D002240 ORTHO05D002453 4.2e-08 61.6 57 59.6
Potri.006G078200 Populus trichocarpa HOM05D002240 ORTHO05D002453 4.2e-08 61.6 57 59.6
Rhsim03G0061800 Rhododendron simsii HOM05D002240 ORTHO05D002453 4.2e-08 61.6 57 59.6
Sabra06G0059100 Salix brachista HOM05D002240 ORTHO05D002453 4.2e-08 61.6 57 59.6
Solyc01g008330.4 Solanum lycopersicum HOM05D002240 ORTHO05D002453 4.2e-08 61.6 57 59.6
Sopen01g003850 Solanum pennellii HOM05D002240 ORTHO05D002453 4.2e-08 61.6 57 59.6
PGSC0003DMG400016395 Solanum tuberosum HOM05D002240 ORTHO05D002453 4.2e-08 61.6 57 59.6
SGA_v2.0_scaffold65G22184 Striga asiatica HOM05D002240 ORTHO05D002453 4.2e-08 61.6 57 59.6
Thecc.09G195700 Theobroma cacao HOM05D002240 ORTHO05D002453 4.2e-08 61.6 57 59.6
TWI34G0509 Tripterygium wilfordii HOM05D002240 ORTHO05D002453 4.2e-08 61.6 57 59.6
vmacro07503 Vaccinium macrocarpon HOM05D002240 ORTHO05D002453 4.2e-08 61.6 57 59.6
GSVIVG01032257001 Vitis vinifera HOM05D002240 ORTHO05D002453 4.2e-08 61.6 57 59.6
Actinidia06189 Actinidia chinensis HOM05D002240 ORTHO05D002453 5.5e-08 61.2 57 57.9
arahy.Tifrunner.gnm1.ann1.E1R28C Arachis hypogaea HOM05D002240 ORTHO05D002453 5.5e-08 61.2 60 56.7
arahy.Tifrunner.gnm1.ann1.H4HC75 Arachis hypogaea HOM05D002240 ORTHO05D002453 5.5e-08 61.2 60 56.7
Cc11_g00510 Coffea canephora HOM05D002240 ORTHO05D002453 5.5e-08 61.2 57 57.9
Lsat_1_v5_gn_4_26601 Lactuca sativa HOM05D002240 ORTHO05D002453 5.5e-08 61.2 57 57.9
Manes.02G227000 Manihot esculenta HOM05D002240 ORTHO05D002453 5.5e-08 61.2 57 57.9
QL02p012521 Quercus lobata HOM05D002240 ORTHO05D002453 5.5e-08 61.2 57 57.9
TPR.G25471 Trifolium pratense HOM05D002240 ORTHO05D002453 5.5e-08 61.2 57 57.9
unitig_699.g19638 Utricularia gibba HOM05D002240 ORTHO05D002453 5.5e-08 61.2 57 57.9
EL10Ac8g19477 Beta vulgaris HOM05D002240 ORTHO05D002453 7.1e-08 60.8 57 57.9
CBR_g39919 Chara braunii HOM05D000019 ORTHO05D002453 7.1e-08 60.8 59 52.5
AUR62033019 Chenopodium quinoa HOM05D002240 ORTHO05D002453 7.1e-08 60.8 57 57.9
AUR62040776 Chenopodium quinoa HOM05D002240 ORTHO05D002453 7.1e-08 60.8 57 57.9
Lj3A846T60 Lonicera japonica HOM05D002240 ORTHO05D002453 7.1e-08 60.8 57 57.9
Psat0s916g0080 Pisum sativum HOM05D002240 ORTHO05D002453 7.1e-08 60.8 57 57.9
QL11p008801 Quercus lobata HOM05D002240 ORTHO05D002453 7.1e-08 60.8 57 56.1
Hund06738 Selenicereus undatus HOM05D002240 ORTHO05D002453 7.1e-08 60.8 57 57.9
MSTRG.2073 Avicennia marina HOM05D002240 ORTHO05D002453 9.3e-08 60.5 57 57.9
Cfa020743 Carpinus fangiana HOM05D002240 ORTHO05D002453 9.3e-08 60.5 57 57.9
ClCG04G002920 Citrullus lanatus HOM05D002240 ORTHO05D002453 9.3e-08 60.5 57 57.9
Haze_19059 Corylus avellana HOM05D002240 ORTHO05D002453 9.3e-08 60.5 57 57.9
MELO3C003265.2 Cucumis melo HOM05D002240 ORTHO05D002453 9.3e-08 60.5 57 57.9
HanXRQChr01g0028581 Helianthus annuus HOM05D002240 ORTHO05D002453 9.3e-08 60.5 57 57.9
Medtr8g101330 Medicago truncatula HOM05D002240 ORTHO05D002453 9.3e-08 60.5 57 57.9
Oeu028423.2 Olea europaea HOM05D002240 ORTHO05D002453 9.3e-08 60.5 55 60.0
Potri.018G146300 Populus trichocarpa HOM05D002240 ORTHO05D002453 9.3e-08 60.5 57 57.9
Sed0018879 Sechium edule HOM05D002240 ORTHO05D002453 9.3e-08 60.5 57 57.9
Ca_17426_v3 Cicer arietinum L. HOM05D002240 ORTHO05D002453 1.2e-07 60.1 57 56.1
Ca_17435_v3 Cicer arietinum L. HOM05D002240 ORTHO05D002453 1.2e-07 60.1 57 56.1
ECA234G2898 Erigeron canadensis HOM05D002240 ORTHO05D002453 1.2e-07 60.1 57 56.1
ATR0626G336 Amborella trichopoda HOM05D002240 ORTHO05D002453 2.1e-07 59.3 57 59.6
AagrBONN_evm.TU.Sc2ySwM_344.3624 Anthoceros agrestis HOM05D002240 ORTHO05D002453 2.1e-07 59.3 59 55.9
PGR044G0547 Punica granatum HOM05D002240 ORTHO05D002453 2.1e-07 59.3 57 56.1
CiPaw.16G103500 Carya illinoinensis HOM05D002240 ORTHO05D002453 2.7e-07 58.9 57 57.9
SMO358G0500 Selaginella moellendorffii HOM05D002240 ORTHO05D002453 2.7e-07 58.9 59 55.9
FvH4_4g06120 Fragaria vesca HOM05D002240 ORTHO05D002453 3.5e-07 58.5 57 57.9
FAN07G1856 Fragaria x ananassa HOM05D002240 ORTHO05D002453 3.5e-07 58.5 57 57.9
FAN12G3492 Fragaria x ananassa HOM05D002240 ORTHO05D002453 3.5e-07 58.5 57 57.9
FAN17G0410 Fragaria x ananassa HOM05D002240 ORTHO05D002453 3.5e-07 58.5 57 57.9
FAN22G0303 Fragaria x ananassa HOM05D002240 ORTHO05D002453 3.5e-07 58.5 57 57.9
MD01G1022300 Malus domestica HOM05D002240 ORTHO05D002453 3.5e-07 58.5 57 57.9
MD13G1233600 Malus domestica HOM05D002240 ORTHO05D002453 3.5e-07 58.5 57 57.9
MD16G1238600 Malus domestica HOM05D002240 ORTHO05D002453 3.5e-07 58.5 57 57.9
Prupe.1G064800 Prunus persica HOM05D002240 ORTHO05D002453 3.5e-07 58.5 57 57.9
Prupe.4G259200 Prunus persica HOM05D002240 ORTHO05D002453 3.5e-07 58.5 57 57.9
RcHm_v2.0_Chr4g0397731 Rosa chinensis HOM05D002240 ORTHO05D002453 3.5e-07 58.5 57 57.9
VMungo0251G3396 Vigna mungo HOM05D002240 ORTHO05D002453 3.5e-07 58.5 60 55.0
CDE02G3595 Ceratophyllum demersum HOM05D002240 ORTHO05D002453 6.0e-07 57.8 57 56.1
Phvul.002G302900 Phaseolus vulgaris HOM05D002240 ORTHO05D002453 6.0e-07 57.8 60 53.3
Sc21g0002420 Simmondsia chinensis HOM05D002240 ORTHO05D002453 1.0e-06 57.0 57 57.9
CsaV3_4G029830 Cucumis sativus L. HOM05D002240 ORTHO05D002453 1.3e-06 56.6 57 54.4
MD15G1330100 Malus domestica HOM05D002240 ORTHO05D002453 1.3e-06 56.6 57 56.1
Sc12g0008210 Simmondsia chinensis HOM05D002240 ORTHO05D002453 2.3e-06 55.8 57 56.1


User provided reference genes

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