Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c24_3880 Physcomitrium patens HOM05D006251 ORTHO05D007695 2.7e-80 302.0 155 100.0
Pp3c23_9430 Physcomitrium patens HOM05D006251 ORTHO05D007695 1.2e-69 266.5 169 82.8
Aqoxy3G00920 Aquilegia oxysepala HOM05D006251 ORTHO05D007695 4.9e-50 201.4 148 67.6
Sc04g0007470 Simmondsia chinensis HOM05D006251 ORTHO05D007695 4.9e-50 201.4 146 66.4
Eucgr.G02430 Eucalyptus grandis HOM05D006251 ORTHO05D007695 1.9e-49 199.5 144 67.4
Lsat_1_v5_gn_3_53680 Lactuca sativa HOM05D006251 ORTHO05D007695 1.9e-49 199.5 147 67.3
HanXRQChr15g0477161 Helianthus annuus HOM05D006251 ORTHO05D007695 3.2e-49 198.7 147 65.3
CSS0009604 Camellia sinensis var. sinensis HOM05D006251 ORTHO05D007695 7.1e-49 197.6 145 66.9
Nn3g17499 Nelumbo nucifera HOM05D006251 ORTHO05D007695 7.1e-49 197.6 145 67.6
COL.COLO4_12139 Corchorus olitorius HOM05D006251 ORTHO05D007695 9.2e-49 197.2 145 67.6
DCAR_030047 Daucus carota HOM05D006251 ORTHO05D007695 1.2e-48 196.8 147 65.3
Duzib147G1163 Durio zibethinus HOM05D006251 ORTHO05D007695 1.2e-48 196.8 145 66.9
MELO3C011414.2 Cucumis melo HOM05D006251 ORTHO05D007695 2.1e-48 196.1 145 66.9
Gohir.A12G057700 Gossypium hirsutum HOM05D006251 ORTHO05D007695 2.1e-48 196.1 148 65.5
Gohir.D12G057500 Gossypium hirsutum HOM05D006251 ORTHO05D007695 2.1e-48 196.1 148 65.5
Gorai.008G060600 Gossypium raimondii HOM05D006251 ORTHO05D007695 2.1e-48 196.1 148 65.5
Thecc.01G144600 Theobroma cacao HOM05D006251 ORTHO05D007695 2.1e-48 196.1 145 66.9
ClCG08G010490 Citrullus lanatus HOM05D006251 ORTHO05D007695 3.5e-48 195.3 145 66.2
AUR62007897 Chenopodium quinoa HOM05D006251 ORTHO05D007695 4.6e-48 194.9 144 66.7
Mapoly0003s0262 Marchantia polymorpha HOM05D006251 ORTHO05D007695 4.6e-48 194.9 163 65.0
PSO017G1239 Papaver somniferum HOM05D006251 ORTHO05D007695 4.6e-48 194.9 147 66.7
QL03p073745 Quercus lobata HOM05D006251 ORTHO05D007695 4.6e-48 194.9 144 64.6
ATR0827G163 Amborella trichopoda HOM05D006251 ORTHO05D007695 6.0e-48 194.5 143 67.1
CANSAT64G0858 Cannabis sativa HOM05D006251 ORTHO05D007695 6.0e-48 194.5 144 64.6
CsaV3_6G033740 Cucumis sativus L. HOM05D006251 ORTHO05D007695 6.0e-48 194.5 145 66.9
MD13G1060000 Malus domestica HOM05D006251 ORTHO05D007695 6.0e-48 194.5 145 66.2
MD16G1059400 Malus domestica HOM05D006251 ORTHO05D007695 6.0e-48 194.5 145 66.2
CDE07G1948 Ceratophyllum demersum HOM05D006251 ORTHO05D007695 7.8e-48 194.1 144 66.7
Lalb_Chr10g0098941 Lupinus albus HOM05D006251 ORTHO05D007695 1.0e-47 193.7 145 65.5
PSO478G0833 Papaver somniferum HOM05D006251 ORTHO05D007695 1.0e-47 193.7 147 66.0
Ciclev10032914m.g Citrus clementina HOM05D006251 ORTHO05D007695 1.7e-47 193.0 144 66.7
Medtr5g044970 Medicago truncatula HOM05D006251 ORTHO05D007695 1.7e-47 193.0 143 65.0
SalBow2G3351 Salvia bowleyana HOM05D006251 ORTHO05D007695 1.7e-47 193.0 144 66.0
TPR.G23760 Trifolium pratense HOM05D006251 ORTHO05D007695 1.7e-47 193.0 143 65.0
TWI79G1568 Tripterygium wilfordii HOM05D006251 ORTHO05D007695 1.7e-47 193.0 145 66.2
unitig_22.g6893 Utricularia gibba HOM05D006251 ORTHO05D007695 1.7e-47 193.0 146 65.1
Ah.03g138780 Amaranthus hybridus HOM05D006251 ORTHO05D007695 2.3e-47 192.6 144 66.0
ECA246G1802 Erigeron canadensis HOM05D006251 ORTHO05D007695 2.3e-47 192.6 147 64.6
Actinidia16152 Actinidia chinensis HOM05D006251 ORTHO05D007695 3.0e-47 192.2 145 65.5
Cc11_g11800 Coffea canephora HOM05D006251 ORTHO05D007695 3.0e-47 192.2 144 66.0
Prupe.1G289400 Prunus persica HOM05D006251 ORTHO05D007695 3.0e-47 192.2 145 65.5
EL10Ac6g15019 Beta vulgaris HOM05D006251 ORTHO05D007695 3.9e-47 191.8 144 64.6
Manes.01G026600 Manihot esculenta HOM05D006251 ORTHO05D007695 3.9e-47 191.8 147 63.3
PGR119G0343 Punica granatum HOM05D006251 ORTHO05D007695 3.9e-47 191.8 146 65.1
RcHm_v2.0_Chr4g0437961 Rosa chinensis HOM05D006251 ORTHO05D007695 3.9e-47 191.8 148 64.2
CiPaw.05G123800 Carya illinoinensis HOM05D006251 ORTHO05D007695 5.1e-47 191.4 145 64.8
Phvul.003G040600 Phaseolus vulgaris HOM05D006251 ORTHO05D007695 5.1e-47 191.4 145 64.1
Zm00001eb219260 Zea mays HOM05D006251 ORTHO05D007695 5.1e-47 191.4 144 65.3
Dinv20151 Davidia involucrata HOM05D006251 ORTHO05D007695 6.6e-47 191.0 145 64.1
GSVIVG01010778001 Vitis vinifera HOM05D006251 ORTHO05D007695 6.6e-47 191.0 144 65.3
Cfa008862 Carpinus fangiana HOM05D006251 ORTHO05D007695 8.7e-47 190.7 145 64.1
Rhsim09G0125900 Rhododendron simsii HOM05D000634 ORTHO05D007695 8.7e-47 190.7 146 65.1
vmacro10437 Vaccinium macrocarpon HOM05D006251 ORTHO05D007695 8.7e-47 190.7 145 64.8
arahy.Tifrunner.gnm1.ann1.BKZY3B Arachis hypogaea HOM05D006251 ORTHO05D007695 1.1e-46 190.3 144 67.4
Lj3A1029T38 Lonicera japonica HOM05D006251 ORTHO05D007695 1.1e-46 190.3 143 65.0
Solyc04g005350.3 Solanum lycopersicum HOM05D006251 ORTHO05D007695 1.1e-46 190.3 144 65.3
BolC5t29901H Brassica oleracea HOM05D006251 ORTHO05D007695 1.5e-46 189.9 147 63.9
FvH4_4g29710 Fragaria vesca HOM05D006251 ORTHO05D007695 1.5e-46 189.9 144 65.3
FAN07G0390 Fragaria x ananassa HOM05D000634 ORTHO05D007695 1.5e-46 189.9 144 65.3
FAN12G1640 Fragaria x ananassa HOM05D006251 ORTHO05D007695 1.5e-46 189.9 144 65.3
FAN22G1444 Fragaria x ananassa HOM05D006251 ORTHO05D007695 1.5e-46 189.9 144 65.3
Glyma.02G120500 Glycine max HOM05D006251 ORTHO05D007695 1.5e-46 189.9 145 64.1
Sopen04g001330 Solanum pennellii HOM05D006251 ORTHO05D007695 1.5e-46 189.9 144 65.3
arahy.Tifrunner.gnm1.ann1.5K1Z4H Arachis hypogaea HOM05D006251 ORTHO05D007695 1.9e-46 189.5 144 67.4
THA.LOC104812006 Tarenaya hassleriana HOM05D006251 ORTHO05D007695 1.9e-46 189.5 147 65.3
VMungo1215G0794 Vigna mungo HOM05D006251 ORTHO05D007695 1.9e-46 189.5 145 63.4
MBI16_g03090_MAGBIO Magnolia biondii HOM05D006251 ORTHO05D007695 2.5e-46 189.1 124 71.8
TAR622G1376 Trochodendron aralioides HOM05D006251 ORTHO05D007695 2.5e-46 189.1 141 66.7
Ca_05001_v3 Cicer arietinum L. HOM05D006251 ORTHO05D007695 3.3e-46 188.7 145 62.8
BcaC05g25275 Brassica carinata HOM05D006251 ORTHO05D007695 5.6e-46 188.0 144 64.6
C05p11520 Brassica napus HOM05D006251 ORTHO05D007695 5.6e-46 188.0 144 64.6
Migut.E00044 Erythranthe guttata HOM05D006251 ORTHO05D007695 7.3e-46 187.6 146 65.8
Glyma.01G062300 Glycine max HOM05D006251 ORTHO05D007695 7.3e-46 187.6 145 63.4
Atru.chr11.1602 Acer truncatum HOM05D006251 ORTHO05D007695 9.6e-46 187.2 144 63.2
FAN17G1351 Fragaria x ananassa HOM05D006251 ORTHO05D007695 2.1e-45 186.0 144 64.6
AT1G13690 Arabidopsis thaliana HOM05D006251 ORTHO05D007695 2.8e-45 185.7 144 63.9
BraA06t24166Z Brassica rapa HOM05D006251 ORTHO05D007695 2.8e-45 185.7 144 63.2
Haze_11885 Corylus avellana HOM05D006251 ORTHO05D007695 2.8e-45 185.7 142 64.1
CARHR014090 Cardamine hirsuta HOM05D006251 ORTHO05D007695 3.6e-45 185.3 144 63.2
MSTRG.2302 Avicennia marina HOM05D006251 ORTHO05D007695 4.8e-45 184.9 145 64.1
Lj2g0007519 Lotus japonicus HOM05D006251 ORTHO05D007695 6.2e-45 184.5 145 66.2
SGA_v2.0_scaffold59G20670 Striga asiatica HOM05D006251 ORTHO05D007695 6.2e-45 184.5 143 64.3
Carub.0001s1343 Capsella rubella HOM05D006251 ORTHO05D007695 8.1e-45 184.1 144 62.5
BcaB02g06466 Brassica carinata HOM05D006251 ORTHO05D007695 1.1e-44 183.7 144 62.5
Thhalv10008898m.g Eutrema salsugineum HOM05D006251 ORTHO05D007695 1.1e-44 183.7 144 62.5
Sp1g12220 Schrenkiella parvula HOM05D006251 ORTHO05D007695 1.1e-44 183.7 144 62.5
Aa31LG1G1230 Aethionema arabicum HOM05D006251 ORTHO05D007695 2.4e-44 182.6 144 62.5
AL1G25480 Arabidopsis lyrata HOM05D006251 ORTHO05D007695 2.4e-44 182.6 144 61.8
HPP92_017644 Vanilla planifolia HOM05D006251 ORTHO05D007695 2.4e-44 182.6 145 61.4
Potri.008G097500 Populus trichocarpa HOM05D006251 ORTHO05D007695 4.0e-44 181.8 145 62.8
SMO356G0419 Selaginella moellendorffii HOM05D006251 ORTHO05D007695 1.5e-43 179.9 129 65.9
Sed0021896 Sechium edule HOM05D006251 ORTHO05D007695 3.2e-41 172.2 146 58.2
PGSC0003DMG400001940 Solanum tuberosum HOM05D006251 ORTHO05D007695 1.6e-40 169.9 186 51.1
SEGI_14342 Sequoiadendron giganteum HOM05D006251 ORTHO05D007695 2.3e-39 166.0 143 58.7
Psat2g131760 Pisum sativum HOM05D006251 ORTHO05D007695 1.6e-37 159.8 97 72.2
Haze_20966 Corylus avellana HOM05D006251 ORTHO05D007695 6.9e-36 154.5 232 40.5
AagrBONN_evm.TU.Sc2ySwM_344.2145 Anthoceros agrestis HOM05D006251 ORTHO05D007695 1.2e-35 153.7 137 58.4
Nitab4.5_0008776g0040 Nicotiana tabacum HOM05D006251 ORTHO05D007695 7.6e-35 151.0 145 53.8
Nitab4.5_0001118g0050 Nicotiana tabacum HOM05D006251 ORTHO05D007695 9.9e-35 150.6 145 53.8
Peaxi162Scf00667g00025 Petunia axillaris HOM05D006251 ORTHO05D007695 2.2e-34 149.4 89 73.0
Cre06.g288750 Chlamydomonas reinhardtii HOM05D006251 ORTHO05D007695 1.3e-29 133.7 133 48.1
CBR_g28640 Chara braunii HOM05D006251 ORTHO05D007695 1.1e-28 130.6 95 65.3
Nitab4.5_0007615g0010 Nicotiana tabacum HOM05D006251 ORTHO05D007695 6.9e-28 127.9 142 50.0
Potri.010G157000 Populus trichocarpa HOM05D006251 ORTHO05D007695 1.2e-27 127.1 140 50.7
MCO13G196 Micromonas commoda HOM05D006251 ORTHO05D007695 5.8e-27 124.8 94 58.5
CBR_g6581 Chara braunii HOM05D006251 ORTHO05D007695 7.6e-27 124.4 82 72.0
AUR62003080 Chenopodium quinoa HOM05D006251 ORTHO05D007695 1.7e-26 123.2 76 71.1
Hma1.2p1_0566F.1_g179960 Hydrangea macrophylla HOM05D006251 ORTHO05D007695 2.2e-26 122.9 76 69.7
Sed0015628 Sechium edule HOM05D006251 ORTHO05D007695 2.2e-26 122.9 75 72.0
GSVIVG01010785001 Vitis vinifera HOM05D006251 ORTHO05D007695 4.9e-26 121.7 104 59.6
SMO356G0608 Selaginella moellendorffii HOM05D006251 ORTHO05D007695 7.1e-25 117.9 85 67.1
Migut.K00754 Erythranthe guttata HOM05D006251 ORTHO05D007695 7.9e-24 114.4 96 64.6
Dinv34051 Davidia involucrata HOM05D006251 ORTHO05D007695 5.1e-23 111.7 95 57.9
SMO340G0125 Selaginella moellendorffii HOM05D006251 ORTHO05D007695 8.7e-23 110.9 85 65.9
Cpa.g.sc1.151 Carica papaya HOM05D006251 ORTHO05D007695 4.6e-16 88.6 54 72.2
SalBow6G1459 Salvia bowleyana HOM05D006251 ORTHO05D007695 8.7e-15 84.3 72 54.2
PRCOL_00002021 Prasinoderma coloniale HOM05D006251 ORTHO05D007695 9.7e-14 80.9 98 43.9
CSS0036021 Camellia sinensis var. sinensis HOM05D006251 ORTHO05D007695 3.7e-13 79.0 69 62.3
AUR62003081 Chenopodium quinoa HOM05D006251 ORTHO05D007695 1.8e-12 76.6 67 64.2
Cfa025336 Carpinus fangiana HOM05D006251 ORTHO05D007695 5.5e-09 65.1 117 35.9
SalBow8G3807 Salvia bowleyana HOM05D006251 ORTHO05D007695 7.2e-09 64.7 52 57.7
SalBow8G0233 Salvia bowleyana HOM05D006251 ORTHO05D007695 1.6e-08 63.5 48 60.4
SalBow8G1566 Salvia bowleyana HOM05D006251 ORTHO05D007695 1.6e-08 63.5 48 60.4
CBR_g26188 Chara braunii HOM05D000142 ORTHO05D000124 7.9e-08 61.2 66 43.9
Lsat_1_v5_gn_4_111061 Lactuca sativa HOM05D000142 ORTHO05D000124 2.3e-07 59.7 75 38.7
BcaC06g36137 Brassica carinata HOM05D000142 ORTHO05D000124 3.0e-07 59.3 78 38.5
C07p07420 Brassica napus HOM05D000142 ORTHO05D000124 3.0e-07 59.3 78 38.5
BolC7t41158H Brassica oleracea HOM05D000142 ORTHO05D000124 3.0e-07 59.3 78 38.5
Lsat_1_v5_gn_1_13420 Lactuca sativa HOM05D000142 ORTHO05D000124 3.0e-07 59.3 79 38.0
HanXRQChr09g0270241 Helianthus annuus HOM05D000142 ORTHO05D000124 3.9e-07 58.9 78 38.5
Dinv34942 Davidia involucrata HOM05D000142 ORTHO05D000124 5.1e-07 58.5 75 34.7
Mapoly0183s0014 Marchantia polymorpha HOM05D000142 ORTHO05D001253 6.7e-07 58.2 93 33.3
ECA232G4464 Erigeron canadensis HOM05D000142 ORTHO05D000124 8.8e-07 57.8 75 38.7
Medtr7g013730 Medicago truncatula HOM05D000142 ORTHO05D000124 8.8e-07 57.8 74 39.2
Phvul.008G033500 Phaseolus vulgaris HOM05D000142 ORTHO05D000124 8.8e-07 57.8 69 42.0
SMO356G0360 Selaginella moellendorffii HOM05D006251 ORTHO05D378076 8.8e-07 57.8 53 58.5
Ah.10g032270 Amaranthus hybridus HOM05D000142 ORTHO05D000124 1.1e-06 57.4 74 35.1
Medtr7g013740 Medicago truncatula HOM05D000142 ORTHO05D000124 1.1e-06 57.4 61 41.0
EL10Ac2g03140 Beta vulgaris HOM05D000142 ORTHO05D000124 1.5e-06 57.0 88 30.7
AUR62038670 Chenopodium quinoa HOM05D000142 ORTHO05D000124 1.5e-06 57.0 88 30.7
SMO137G0003 Selaginella moellendorffii HOM05D000142 ORTHO05D000124 1.5e-06 57.0 69 37.7
SGA_v2.0_scaffold25G10958 Striga asiatica HOM05D000142 ORTHO05D000124 1.5e-06 57.0 74 39.2
Mapoly0012s0133 Marchantia polymorpha HOM05D000142 ORTHO05D001253 2.0e-06 56.6 85 37.6
Mapoly0042s0009 Marchantia polymorpha HOM05D000142 ORTHO05D001253 2.0e-06 56.6 81 38.3
Os03g0681900 Oryza sativa ssp. japonica HOM05D003978 ORTHO05D006033 2.0e-06 56.6 57 43.9
Actinidia16127 Actinidia chinensis HOM05D000142 ORTHO05D000124 2.5e-06 56.2 71 38.0
CANSAT56G2059 Cannabis sativa HOM05D000604 ORTHO05D004856 2.5e-06 56.2 56 39.3
HanXRQChr16g0502461 Helianthus annuus HOM05D000142 ORTHO05D000124 2.5e-06 56.2 75 37.3
MBI10_g38927_MAGBIO Magnolia biondii HOM05D000910 ORTHO05D000852 2.5e-06 56.2 57 43.9
Nitab4.5_0008708g0030 Nicotiana tabacum HOM05D001197 ORTHO05D009835 2.5e-06 56.2 62 41.9
THA.LOC104798716 Tarenaya hassleriana HOM05D001197 ORTHO05D000124 2.5e-06 56.2 82 34.1
HPP92_026869 Vanilla planifolia HOM05D000142 ORTHO05D000124 2.5e-06 56.2 73 39.7
Os03g0374575 Oryza sativa ssp. japonica HOM05D001283 ORTHO05D001109 3.3e-06 55.8 63 46.0
Atru.chr9.1575 Acer truncatum HOM05D001197 ORTHO05D000124 4.3e-06 55.5 82 32.9
AT5G61030 Arabidopsis thaliana HOM05D000142 ORTHO05D000124 4.3e-06 55.5 70 38.6
CANSAT35G1381 Cannabis sativa HOM05D000604 ORTHO05D004856 4.3e-06 55.5 56 39.3
Eucgr.D00021 Eucalyptus grandis HOM05D003377 ORTHO05D009835 4.3e-06 55.5 58 43.1
PSO724G0279 Papaver somniferum HOM05D009891 ORTHO05D009626 4.3e-06 55.5 86 36.0
Potri.016G062500 Populus trichocarpa HOM05D001283 ORTHO05D001109 4.3e-06 55.5 63 42.9
Sabra16G0064400 Salix brachista HOM05D001283 ORTHO05D001109 4.3e-06 55.5 63 42.9
SMO304G0106 Selaginella moellendorffii HOM05D000142 ORTHO05D000124 4.3e-06 55.5 74 36.5
Zm00001eb032690 Zea mays HOM05D000142 ORTHO05D000124 4.3e-06 55.5 75 38.7
CARHR274740 Cardamine hirsuta HOM05D000142 ORTHO05D000124 5.7e-06 55.1 70 37.1
SHI27085 Sapria himalayana HOM05D000142 ORTHO05D000124 5.7e-06 55.1 75 37.3
VMungo1383G2084 Vigna mungo HOM05D000142 ORTHO05D000124 5.7e-06 55.1 69 39.1
Ca_04353_v3 Cicer arietinum L. HOM05D000142 ORTHO05D000124 7.4e-06 54.7 77 39.0
Ca_30481_v3 Cicer arietinum L. HOM05D000142 ORTHO05D000124 7.4e-06 54.7 77 39.0
Migut.D01646 Erythranthe guttata HOM05D000142 ORTHO05D000124 7.4e-06 54.7 74 35.1
Hma1.2p1_0060F.1_g033080 Hydrangea macrophylla HOM05D000142 ORTHO05D000124 7.4e-06 54.7 75 36.0
Hma1.2p1_0088F.1_g045050 Hydrangea macrophylla HOM05D001197 ORTHO05D009835 7.4e-06 54.7 56 41.1
Lj1g0019157 Lotus japonicus HOM05D000142 ORTHO05D000124 7.4e-06 54.7 70 37.1
Nn6g35249 Nelumbo nucifera HOM05D003978 ORTHO05D006033 7.4e-06 54.7 66 40.9
Sp2g24330 Schrenkiella parvula HOM05D000142 ORTHO05D000124 7.4e-06 54.7 70 35.7
SMO339G0031 Selaginella moellendorffii HOM05D000142 ORTHO05D000124 7.4e-06 54.7 62 38.7
Sc07g0005660 Simmondsia chinensis HOM05D000142 ORTHO05D000124 7.4e-06 54.7 63 34.9
HPP92_017522 Vanilla planifolia HOM05D003978 ORTHO05D006033 9.7e-06 54.3 74 40.5
GSVIVG01009091001 Vitis vinifera HOM05D000142 ORTHO05D003173 9.7e-06 54.3 60 43.3


User provided reference genes

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