Gene: SHI27085

General Information

Structural Information

  • Species Sapria himalayana
  • Gene Identifier SHI27085
  • Transcript Identifier SHI27085-RA
  • Gene Type Coding gene
  • Location scaffold49_4090992 : 3655896-3657314 : positive

Gene Family Information

  • ID HOM05D000142
  • #Genes/#Species 2580/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid SHI27085-RA

Descriptions

  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006406
ISO
PLAZA Integrative OrthologymRNA export from nucleus AT2G21660
GO:0032508
ISO
PLAZA Integrative OrthologyDNA duplex unwinding AT2G21660
GO:0016554
ISO
PLAZA Integrative Orthologycytidine to uridine editing AT1G73530
GO:0006970
ISO
PLAZA Integrative Orthologyresponse to osmotic stress AT4G13850
GO:0046686
ISO
PLAZA Integrative Orthologyresponse to cadmium ion AT2G21660
GO:0007623
ISO
PLAZA Integrative Orthologycircadian rhythm AT2G21660
GO:0009845
ISO
PLAZA Integrative Orthologyseed germination AT4G13850
GO:1900864
ISO
PLAZA Integrative Orthologymitochondrial RNA modification AT3G23830
GO:0000380
ISO
PLAZA Integrative Orthologyalternative mRNA splicing, via spliceosome AT4G39260
GO:0009737
ISO
PLAZA Integrative Orthologyresponse to abscisic acid AT4G39260
GO:0045087
ISO
PLAZA Integrative Orthologyinnate immune response AT4G39260
GO:0010501
ISO
PLAZA Integrative OrthologyRNA secondary structure unwinding AT2G21660
GO:0010228
ISO
PLAZA Integrative Orthologyvegetative to reproductive phase transition of meristem AT2G21660
GO:0010043
ISO
PLAZA Integrative Orthologyresponse to zinc ion AT4G39260
GO:0009651
ISO
PLAZA Integrative Orthologyresponse to salt stress AT1G18630
GO:1901002
ISO
PLAZA Integrative Orthologypositive regulation of response to salt stress AT5G06210
GO:0080156
ISO
PLAZA Integrative Orthologymitochondrial mRNA modification AT5G61030
GO:1900871
ISO
PLAZA Integrative Orthologychloroplast mRNA modification AT1G73530
GO:0009631
ISO
PLAZA Integrative Orthologycold acclimation AT3G26420
GO:0060567
ISO
PLAZA Integrative Orthologynegative regulation of DNA-templated transcription, termination AT4G13850
GO:0009414
ISO
PLAZA Integrative Orthologyresponse to water deprivation AT4G13850
GO:0009409
ISO
PLAZA Integrative Orthologyresponse to cold AT5G61030
GO:0010119
ISO
PLAZA Integrative Orthologyregulation of stomatal movement AT2G21660

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003729
ISO
PLAZA Integrative OrthologymRNA binding AT1G73530
GO:0042803
ISO
PLAZA Integrative Orthologyprotein homodimerization activity AT1G74230
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding AT1G73530
GO:0034336
ISO
PLAZA Integrative Orthologymisfolded RNA binding AT4G13850
GO:0003697
ISO
PLAZA Integrative Orthologysingle-stranded DNA binding AT5G61030
GO:0003690
ISO
PLAZA Integrative Orthologydouble-stranded DNA binding AT4G13850
GO:0043621
ISO
PLAZA Integrative Orthologyprotein self-association AT1G74230
GO:0003676
IEA
InterPronucleic acid binding
GO:0000166
ISO
PLAZA Integrative Orthologynucleotide binding AT3G26420
GO:0005524
ISO
PLAZA Integrative OrthologyATP binding AT5G61030
GO:0003723
ISO
PLAZA Integrative OrthologyRNA binding AT5G61030
GO:0005507
ISO
PLAZA Integrative Orthologycopper ion binding AT5G61030

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005829
ISO
PLAZA Integrative Orthologycytosol AT3G26420
GO:0005886
ISO
PLAZA Integrative Orthologyplasma membrane AT4G39260
GO:0005634
ISO
PLAZA Integrative Orthologynucleus AT3G26420
GO:0005777
ISO
PLAZA Integrative Orthologyperoxisome AT4G39260
GO:0005737
ISO
PLAZA Integrative Orthologycytoplasm AT3G26420
GO:0005739
ISO
PLAZA Integrative Orthologymitochondrion AT5G61030
GO:0005618
ISO
PLAZA Integrative Orthologycell wall AT4G39260
GO:0005794
ISO
PLAZA Integrative OrthologyGolgi apparatus AT1G18630
GO:0005730
ISO
PLAZA Integrative Orthologynucleolus AT4G39260
GO:0009507
ISO
PLAZA Integrative Orthologychloroplast AT1G73530
GO:0005802
ISO
PLAZA Integrative Orthologytrans-Golgi network AT1G18630
GO:0005768
ISO
PLAZA Integrative Orthologyendosome AT1G18630
GO:0009506
ISO
PLAZA Integrative Orthologyplasmodesma AT4G39260

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR012677 Nucleotide-binding alpha-beta plait domain superfamily
IPR035979 RNA-binding domain superfamily
IPR000504 RNA recognition motif domain
Mapman id Description
16.11.3.3.2 RNA processing.organelle machinery.RNA modification.C-to-U RNA editing.RNA editing factor (ORRM)