Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c24_19230 Physcomitrium patens HOM05D004814 ORTHO05D005778 1.3e-115 419.9 235 100.0
Pp3c20_8830 Physcomitrium patens HOM05D004814 ORTHO05D005778 9.0e-72 274.2 195 77.9
Pp3c8_18990 Physcomitrium patens HOM05D004814 ORTHO05D005778 5.9e-71 271.6 188 75.5
Mapoly0009s0107 Marchantia polymorpha HOM05D004814 ORTHO05D005778 7.0e-48 194.9 202 61.4
AagrBONN_evm.TU.Sc2ySwM_117.1321 Anthoceros agrestis HOM05D004814 ORTHO05D005778 2.6e-47 193.0 117 82.1
CARHR087710 Cardamine hirsuta HOM05D004814 ORTHO05D005778 1.1e-42 177.6 168 57.7
Manes.15G061900 Manihot esculenta HOM05D004814 ORTHO05D005778 1.5e-42 177.2 126 71.4
BcaC05g29209 Brassica carinata HOM05D004814 ORTHO05D005778 2.0e-42 176.8 129 69.0
C05p54820 Brassica napus HOM05D004814 ORTHO05D005778 2.0e-42 176.8 129 69.0
BolC5t34154H Brassica oleracea HOM05D004814 ORTHO05D005778 2.0e-42 176.8 129 69.0
A01p40420 Brassica napus HOM05D004814 ORTHO05D005778 2.6e-42 176.4 130 66.2
BraA01t04077Z Brassica rapa HOM05D004814 ORTHO05D005778 2.6e-42 176.4 130 66.2
Thhalv10021566m.g Eutrema salsugineum HOM05D004814 ORTHO05D005778 3.3e-42 176.0 179 55.3
BraA05t22442Z Brassica rapa HOM05D004814 ORTHO05D005778 4.4e-42 175.6 129 68.2
Glyma.18G079900 Glycine max HOM05D004814 ORTHO05D005778 4.4e-42 175.6 122 73.0
Potri.011G092800 Populus trichocarpa HOM05D004814 ORTHO05D005778 4.4e-42 175.6 124 70.2
THA.LOC104822735 Tarenaya hassleriana HOM05D004814 ORTHO05D005778 4.4e-42 175.6 130 67.7
Manes.03G139872 Manihot esculenta HOM05D004814 ORTHO05D005778 5.7e-42 175.3 124 71.8
QL08p004842 Quercus lobata HOM05D004814 ORTHO05D005778 5.7e-42 175.3 124 72.6
Carub.0003s1246 Capsella rubella HOM05D004814 ORTHO05D005778 7.5e-42 174.9 171 56.7
Gohir.D11G287000 Gossypium hirsutum HOM05D004814 ORTHO05D005778 9.7e-42 174.5 112 75.9
Sabra11G0087000 Salix brachista HOM05D004814 ORTHO05D005778 1.3e-41 174.1 124 70.2
THA.LOC104810287 Tarenaya hassleriana HOM05D004814 ORTHO05D005778 1.3e-41 174.1 102 82.4
Ah.06g181280 Amaranthus hybridus HOM05D004814 ORTHO05D005778 1.7e-41 173.7 156 61.5
AL3G24860 Arabidopsis lyrata HOM05D004814 ORTHO05D005778 1.7e-41 173.7 170 57.6
THA.LOC104815700 Tarenaya hassleriana HOM05D004814 ORTHO05D005778 1.7e-41 173.7 102 82.4
Thecc.07G016800 Theobroma cacao HOM05D004814 ORTHO05D005778 1.7e-41 173.7 112 75.0
TWI39G1010 Tripterygium wilfordii HOM05D004814 ORTHO05D005778 1.7e-41 173.7 124 71.0
CiPaw.12G136400 Carya illinoinensis HOM05D004814 ORTHO05D005778 2.2e-41 173.3 124 71.0
Glyma.08G327500 Glycine max HOM05D004814 ORTHO05D005778 2.2e-41 173.3 122 72.1
Peaxi162Scf00900g00010 Petunia axillaris HOM05D004814 ORTHO05D005778 2.2e-41 173.3 164 57.9
AT3G13120 Arabidopsis thaliana HOM05D004814 ORTHO05D005778 2.8e-41 172.9 170 57.6
arahy.Tifrunner.gnm1.ann1.0CA1AM Arachis hypogaea HOM05D004814 ORTHO05D005778 2.8e-41 172.9 104 79.8
TWI38G0785 Tripterygium wilfordii HOM05D004814 ORTHO05D005778 2.8e-41 172.9 108 76.9
Aa31LG10G250 Aethionema arabicum HOM05D004814 ORTHO05D005778 3.7e-41 172.6 107 77.6
C03p46130 Brassica napus HOM05D004814 ORTHO05D005778 3.7e-41 172.6 170 56.5
CANSAT11G0174 Cannabis sativa HOM05D004814 ORTHO05D005778 3.7e-41 172.6 124 71.0
Gorai.007G310400 Gossypium raimondii HOM05D004814 ORTHO05D005778 3.7e-41 172.6 112 75.0
Aa31LG8G330 Aethionema arabicum HOM05D004814 ORTHO05D005778 4.8e-41 172.2 128 68.0
EL10Ac4g07605 Beta vulgaris HOM05D004814 ORTHO05D005778 4.8e-41 172.2 113 73.5
BcaC01g04010 Brassica carinata HOM05D004814 ORTHO05D005778 4.8e-41 172.2 170 55.9
A05p36420 Brassica napus HOM05D004814 ORTHO05D005778 4.8e-41 172.2 123 68.3
BolC3t16886H Brassica oleracea HOM05D004814 ORTHO05D005778 4.8e-41 172.2 170 55.9
BraA03t12957Z Brassica rapa HOM05D004814 ORTHO05D005778 4.8e-41 172.2 112 74.1
Cpa.g.sc12.175 Carica papaya HOM05D004814 ORTHO05D005778 4.8e-41 172.2 102 80.4
Ca_20138_v3 Cicer arietinum L. HOM05D004814 ORTHO05D005778 4.8e-41 172.2 122 68.0
ClCG09G021040 Citrullus lanatus HOM05D004814 ORTHO05D005778 4.8e-41 172.2 102 80.4
COL.COLO4_09806 Corchorus olitorius HOM05D004814 ORTHO05D005778 4.8e-41 172.2 112 74.1
MELO3C024899.2 Cucumis melo HOM05D004814 ORTHO05D005778 4.8e-41 172.2 102 80.4
CsaV3_7G018640 Cucumis sativus L. HOM05D004814 ORTHO05D005778 4.8e-41 172.2 102 80.4
Phvul.006G055300 Phaseolus vulgaris HOM05D004814 ORTHO05D005778 4.8e-41 172.2 122 72.1
Sp3g11290 Schrenkiella parvula HOM05D004814 ORTHO05D005778 4.8e-41 172.2 119 70.6
Ah.04g166490 Amaranthus hybridus HOM05D004814 ORTHO05D005778 6.3e-41 171.8 156 60.3
Gohir.A01G090000 Gossypium hirsutum HOM05D004814 ORTHO05D005778 6.3e-41 171.8 107 77.6
Gohir.D01G075300 Gossypium hirsutum HOM05D004814 ORTHO05D005778 6.3e-41 171.8 107 77.6
Gorai.002G098500 Gossypium raimondii HOM05D004814 ORTHO05D005778 6.3e-41 171.8 107 77.6
HanXRQChr03g0061321 Helianthus annuus HOM05D004814 ORTHO05D005778 6.3e-41 171.8 110 74.5
Potri.001G365600 Populus trichocarpa HOM05D004814 ORTHO05D005778 6.3e-41 171.8 124 70.2
Sc16g0007970 Simmondsia chinensis HOM05D004814 ORTHO05D005778 6.3e-41 171.8 102 80.4
BcaB06g25486 Brassica carinata HOM05D004814 ORTHO05D005778 8.2e-41 171.4 170 54.7
Cc05_g14790 Coffea canephora HOM05D004814 ORTHO05D005778 8.2e-41 171.4 111 74.8
Atru.chr2.3664 Acer truncatum HOM05D004814 ORTHO05D005778 1.1e-40 171.0 116 71.6
arahy.Tifrunner.gnm1.ann1.CWZH2K Arachis hypogaea HOM05D004814 ORTHO05D005778 1.1e-40 171.0 124 71.0
arahy.Tifrunner.gnm1.ann1.RG8M6K Arachis hypogaea HOM05D004814 ORTHO05D005778 1.1e-40 171.0 124 71.0
arahy.Tifrunner.gnm1.ann1.X98J9H Arachis hypogaea HOM05D004814 ORTHO05D005778 1.1e-40 171.0 124 71.0
A03p38040 Brassica napus HOM05D004814 ORTHO05D005778 1.1e-40 171.0 137 63.5
AUR62036421 Chenopodium quinoa HOM05D004814 ORTHO05D005778 1.1e-40 171.0 152 60.5
AUR62036427 Chenopodium quinoa HOM05D004814 ORTHO05D005778 1.1e-40 171.0 152 60.5
AUR62040646 Chenopodium quinoa HOM05D004814 ORTHO05D005778 1.1e-40 171.0 152 60.5
Lsat_1_v5_gn_9_90400 Lactuca sativa HOM05D004814 ORTHO05D005778 1.1e-40 171.0 102 79.4
Lalb_Chr05g0211691 Lupinus albus HOM05D004814 ORTHO05D005778 1.1e-40 171.0 124 70.2
Phvul.001G030600 Phaseolus vulgaris HOM05D004814 ORTHO05D005778 1.1e-40 171.0 122 71.3
vmacro22713 Vaccinium macrocarpon HOM05D004814 ORTHO05D005778 1.1e-40 171.0 100 82.0
Actinidia30418 Actinidia chinensis HOM05D004814 ORTHO05D005778 1.4e-40 170.6 100 80.0
Cfa020215 Carpinus fangiana HOM05D004814 ORTHO05D005778 1.4e-40 170.6 122 70.5
CDE10G1086 Ceratophyllum demersum HOM05D004814 ORTHO05D005778 1.4e-40 170.6 102 78.4
AUR62017069 Chenopodium quinoa HOM05D004814 ORTHO05D005778 1.4e-40 170.6 108 75.9
Haze_09803 Corylus avellana HOM05D004814 ORTHO05D005778 1.4e-40 170.6 122 70.5
Dinv10318 Davidia involucrata HOM05D004814 ORTHO05D005778 1.4e-40 170.6 124 71.0
Ciclev10009615m.g Citrus clementina HOM05D004814 ORTHO05D005778 1.8e-40 170.2 116 74.1
Gohir.A11G276900 Gossypium hirsutum HOM05D004814 ORTHO05D005778 1.8e-40 170.2 112 73.2
Sed0017349 Sechium edule HOM05D004814 ORTHO05D005778 1.8e-40 170.2 102 79.4
Actinidia05019 Actinidia chinensis HOM05D004814 ORTHO05D005778 2.4e-40 169.9 100 79.0
Actinidia05024 Actinidia chinensis HOM05D004814 ORTHO05D005778 2.4e-40 169.9 100 79.0
BcaNung05270 Brassica carinata HOM05D004814 ORTHO05D005778 2.4e-40 169.9 137 62.8
CSS0025876 Camellia sinensis var. sinensis HOM05D004814 ORTHO05D005778 2.4e-40 169.9 121 69.4
HanXRQChr13g0408121 Helianthus annuus HOM05D004814 ORTHO05D005778 2.4e-40 169.9 115 71.3
Lj1P888T30 Lonicera japonica HOM05D004814 ORTHO05D005778 2.4e-40 169.9 102 79.4
VMungo0248G0001 Vigna mungo HOM05D004814 ORTHO05D005778 2.4e-40 169.9 102 80.4
Nn1g03216 Nelumbo nucifera HOM05D004814 ORTHO05D005778 3.1e-40 169.5 115 72.2
Oeu049351.1 Olea europaea HOM05D004814 ORTHO05D005778 3.1e-40 169.5 127 67.7
PSO541G0969 Papaver somniferum HOM05D004814 ORTHO05D005778 3.1e-40 169.5 113 73.5
DCAR_013223 Daucus carota HOM05D004814 ORTHO05D005778 4.1e-40 169.1 151 62.3
PGR031G1774 Punica granatum HOM05D004814 ORTHO05D005778 4.1e-40 169.1 111 76.6
TAR626G1431 Trochodendron aralioides HOM05D004814 ORTHO05D005778 4.1e-40 169.1 124 68.5
unitig_62.g23297 Utricularia gibba HOM05D004814 ORTHO05D005778 4.1e-40 169.1 107 74.8
MSTRG.14478 Avicennia marina HOM05D004814 ORTHO05D005778 5.3e-40 168.7 109 74.3
Oeu057089.1 Olea europaea HOM05D004814 ORTHO05D005778 5.3e-40 168.7 138 65.9
ATR0624G087 Amborella trichopoda HOM05D004814 ORTHO05D005778 7.0e-40 168.3 102 78.4
MD03G1187000 Malus domestica HOM05D004814 ORTHO05D005778 7.0e-40 168.3 125 68.8
PSO675G8482 Papaver somniferum HOM05D004814 ORTHO05D005778 7.0e-40 168.3 113 72.6
Hund01909 Selenicereus undatus HOM05D004814 ORTHO05D005778 7.0e-40 168.3 102 79.4
HPP92_020399 Vanilla planifolia HOM05D004814 ORTHO05D005778 7.0e-40 168.3 104 78.8
Zm00001eb401060 Zea mays HOM05D004814 ORTHO05D005778 7.0e-40 168.3 166 57.2
A01p40680 Brassica napus HOM05D004814 ORTHO05D005778 9.1e-40 167.9 130 64.6
Prupe.4G239600 Prunus persica HOM05D004814 ORTHO05D005778 9.1e-40 167.9 107 75.7
TAR629G3287 Trochodendron aralioides HOM05D004814 ORTHO05D005778 1.2e-39 167.5 122 69.7
Dinv40842 Davidia involucrata HOM05D004814 ORTHO05D005778 1.6e-39 167.2 137 63.5
Eucgr.F03697 Eucalyptus grandis HOM05D004814 ORTHO05D005778 1.6e-39 167.2 171 55.0
FvH4_3g29500 Fragaria vesca HOM05D004814 ORTHO05D005778 1.6e-39 167.2 100 80.0
FAN11G3417 Fragaria x ananassa HOM05D004814 ORTHO05D005778 1.6e-39 167.2 100 80.0
FAN16G2593 Fragaria x ananassa HOM05D004814 ORTHO05D005778 1.6e-39 167.2 100 80.0
FAN25G3790 Fragaria x ananassa HOM05D004814 ORTHO05D005778 1.6e-39 167.2 100 80.0
MD11G1202000 Malus domestica HOM05D004814 ORTHO05D005778 1.6e-39 167.2 100 80.0
RcHm_v2.0_Chr5g0054381 Rosa chinensis HOM05D004814 ORTHO05D005778 1.6e-39 167.2 100 80.0
Hma1.2p1_0889F.1_g232870 Hydrangea macrophylla HOM05D004814 ORTHO05D005778 2.0e-39 166.8 165 57.6
Rhsim06G0227300 Rhododendron simsii HOM05D004814 ORTHO05D005778 2.0e-39 166.8 103 77.7
CSS0019029 Camellia sinensis var. sinensis HOM05D004814 ORTHO05D005778 3.5e-39 166.0 116 72.4
ECA240G4731 Erigeron canadensis HOM05D001580 ORTHO05D001517 3.5e-39 166.0 112 71.4
Os03g0196800 Oryza sativa ssp. japonica HOM05D004814 ORTHO05D005778 3.5e-39 166.0 102 78.4
TPR.G30737 Trifolium pratense HOM05D004814 ORTHO05D005778 3.5e-39 166.0 107 74.8
BraA01t04102Z Brassica rapa HOM05D004814 ORTHO05D005778 4.5e-39 165.6 102 77.5
FAN21G1289 Fragaria x ananassa HOM05D004814 ORTHO05D005778 4.5e-39 165.6 125 68.8
GSVIVG01014640001 Vitis vinifera HOM05D004814 ORTHO05D005778 4.5e-39 165.6 205 49.8
CAN.G492.31 Capsicum annuum HOM05D004814 ORTHO05D005778 5.9e-39 165.2 135 63.7
Sabra16G0239200 Salix brachista HOM05D004814 ORTHO05D005778 5.9e-39 165.2 215 49.3
Zm00001eb008100 Zea mays HOM05D004814 ORTHO05D005778 5.9e-39 165.2 169 58.6
Solyc10g006030.3 Solanum lycopersicum HOM05D004814 ORTHO05D005778 7.7e-39 164.9 102 77.5
Sopen10g001990 Solanum pennellii HOM05D004814 ORTHO05D005778 7.7e-39 164.9 102 77.5
PGSC0003DMG400014378 Solanum tuberosum HOM05D004814 ORTHO05D005778 7.7e-39 164.9 102 77.5
SEGI_32296 Sequoiadendron giganteum HOM05D004814 ORTHO05D005778 2.2e-38 163.3 154 57.8
Nitab4.5_0003491g0010 Nicotiana tabacum HOM05D004814 ORTHO05D005778 2.9e-38 162.9 111 71.2
Nitab4.5_0006756g0010 Nicotiana tabacum HOM05D004814 ORTHO05D005778 2.9e-38 162.9 111 71.2
QL05p065674 Quercus lobata HOM05D004814 ORTHO05D005778 3.8e-38 162.5 114 73.7
Aqoxy4G02247 Aquilegia oxysepala HOM05D004814 ORTHO05D005778 5.0e-38 162.2 100 76.0
CBR_g19640 Chara braunii HOM05D004814 ORTHO05D005778 5.0e-38 162.2 205 45.9
Duzib213G0234 Durio zibethinus HOM05D004814 ORTHO05D005778 5.0e-38 162.2 112 70.5
SGA_v2.0_scaffold8G04398 Striga asiatica HOM05D004814 ORTHO05D005778 5.0e-38 162.2 128 63.3
C01p51960 Brassica napus HOM05D004814 ORTHO05D005778 7.2e-37 158.3 99 74.7
Psat5g170120 Pisum sativum HOM05D004814 ORTHO05D005778 9.4e-37 157.9 122 65.6
Medtr3g058430 Medicago truncatula HOM05D004814 ORTHO05D005778 1.6e-36 157.1 156 53.8
MBI19_g45743_MAGBIO Magnolia biondii HOM05D004814 ORTHO05D005778 5.2e-35 152.1 99 71.7
SMO228G0012 Selaginella moellendorffii HOM05D004814 ORTHO05D005778 8.8e-35 151.4 100 68.0
MCO07G521 Micromonas commoda HOM05D004814 ORTHO05D005778 1.2e-34 151.0 154 53.9
QL05p065593 Quercus lobata HOM05D004814 ORTHO05D005778 1.2e-34 151.0 102 74.5
PSO832G2117 Papaver somniferum HOM05D004814 ORTHO05D005778 6.5e-30 135.2 98 65.3
PRCOL_00000430 Prasinoderma coloniale HOM05D004814 ORTHO05D005778 4.4e-26 122.5 128 50.8
Cre03.g195650 Chlamydomonas reinhardtii HOM05D004814 ORTHO05D005778 1.2e-23 114.4 118 49.2
MSTRG.13015 Avicennia marina HOM05D004814 ORTHO05D005778 3.6e-20 102.8 61 75.4
Cre16.g660150 Chlamydomonas reinhardtii HOM05D001946 ORTHO05D002111 7.0e-08 62.0 115 33.0
PRCOL_00002469 Prasinoderma coloniale HOM05D001946 ORTHO05D002111 1.2e-07 61.2 116 31.0
Mapoly0158s0015 Marchantia polymorpha HOM05D001946 ORTHO05D002111 2.0e-07 60.5 120 30.0
Mapoly0158s0031 Marchantia polymorpha HOM05D001946 ORTHO05D002111 2.7e-07 60.1 103 32.0
Mapoly0006s0253 Marchantia polymorpha HOM05D001946 ORTHO05D002111 3.5e-07 59.7 105 32.4
CBR_g20003 Chara braunii HOM05D001946 ORTHO05D002111 4.6e-07 59.3 100 33.0
MCO07G048 Micromonas commoda HOM05D001946 ORTHO05D002111 6.0e-07 58.9 99 34.3
Ah.07g208160 Amaranthus hybridus HOM05D001946 ORTHO05D002111 2.3e-06 57.0 100 32.0
Aqoxy5G01460 Aquilegia oxysepala HOM05D001946 ORTHO05D002111 3.0e-06 56.6 112 31.2
Lj6g0019454 Lotus japonicus HOM05D001946 ORTHO05D002111 6.6e-06 55.5 100 31.0
PGR142G2751 Punica granatum HOM05D001946 ORTHO05D002111 6.6e-06 55.5 100 31.0
Psat7g151880 Pisum sativum HOM05D001946 ORTHO05D002111 8.6e-06 55.1 100 31.0


User provided reference genes

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