Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c24_18820 Physcomitrium patens HOM05D005554 ORTHO05D007823 0.0e+00 1594.7 823 100.0
Mapoly0091s0082 Marchantia polymorpha HOM05D005554 ORTHO05D007823 7.4e-262 907.5 787 62.0
AagrBONN_evm.TU.Sc2ySwM_228.1600 Anthoceros agrestis HOM05D005554 ORTHO05D007823 2.4e-252 875.9 742 63.2
PGR031G2745 Punica granatum HOM05D005554 ORTHO05D007823 6.3e-237 824.7 736 58.3
Dinv38934 Davidia involucrata HOM05D005554 ORTHO05D007823 1.8e-236 823.2 731 58.8
Prupe.5G101100 Prunus persica HOM05D005554 ORTHO05D007823 9.1e-236 820.8 729 58.8
Nn6g33413 Nelumbo nucifera HOM05D005554 ORTHO05D007823 4.5e-235 818.5 731 58.8
Actinidia14567 Actinidia chinensis HOM05D005554 ORTHO05D007823 1.3e-234 817.0 708 60.0
Peaxi162Scf00119g01015 Petunia axillaris HOM05D005554 ORTHO05D007823 6.5e-234 814.7 726 58.4
Gohir.D12G231000 Gossypium hirsutum HOM05D005554 ORTHO05D007823 8.5e-234 814.3 739 57.8
TAR375G0921 Trochodendron aralioides HOM05D005554 ORTHO05D007823 1.9e-233 813.1 729 58.0
Ciclev10018956m.g Citrus clementina HOM05D005554 ORTHO05D007823 4.2e-233 812.0 738 57.6
Migut.E01089 Erythranthe guttata HOM05D005554 ORTHO05D007823 7.2e-233 811.2 724 58.7
RcHm_v2.0_Chr7g0197491 Rosa chinensis HOM05D005554 ORTHO05D007823 7.2e-233 811.2 729 58.0
Atru.chr9.2175 Acer truncatum HOM05D005554 ORTHO05D007823 1.6e-232 810.1 737 57.8
PSO782G1990 Papaver somniferum HOM05D005554 ORTHO05D007823 1.6e-232 810.1 724 57.5
Gohir.A12G229900 Gossypium hirsutum HOM05D005554 ORTHO05D007823 2.7e-232 809.3 744 57.4
PSO478G3044 Papaver somniferum HOM05D005554 ORTHO05D007823 4.7e-232 808.5 724 57.6
PGSC0003DMG402012338 Solanum tuberosum HOM05D005554 ORTHO05D007823 4.7e-232 808.5 731 57.6
Gorai.008G247200 Gossypium raimondii HOM05D005554 ORTHO05D007823 6.1e-232 808.1 739 57.6
MD06G1085100 Malus domestica HOM05D005554 ORTHO05D007823 6.1e-232 808.1 729 58.4
CSS0044545 Camellia sinensis var. sinensis HOM05D005554 ORTHO05D007823 1.4e-231 807.0 734 57.8
Potri.001G103300 Populus trichocarpa HOM05D005554 ORTHO05D007823 1.8e-231 806.6 731 58.4
Thecc.03G279900 Theobroma cacao HOM05D005554 ORTHO05D007823 2.3e-231 806.2 740 56.8
FAN04G0002 Fragaria x ananassa HOM05D005554 ORTHO05D007823 3.0e-231 805.8 726 57.7
Duzib205G0518 Durio zibethinus HOM05D005554 ORTHO05D007823 3.9e-231 805.4 739 56.8
Oeu064085.1 Olea europaea HOM05D005554 ORTHO05D007823 6.7e-231 804.7 733 57.4
QL12p032791 Quercus lobata HOM05D005554 ORTHO05D007823 6.7e-231 804.7 748 57.1
Nitab4.5_0001615g0110 Nicotiana tabacum HOM05D005554 ORTHO05D007823 1.5e-230 803.5 730 57.5
Aqoxy7G00299 Aquilegia oxysepala HOM05D005554 ORTHO05D007823 2.6e-230 802.7 724 58.3
SalBow1G4020 Salvia bowleyana HOM05D005554 ORTHO05D007823 2.6e-230 802.7 715 58.3
Sopen08g029470 Solanum pennellii HOM05D005554 ORTHO05D007823 2.6e-230 802.7 731 57.0
Eucgr.D01840 Eucalyptus grandis HOM05D005554 ORTHO05D007823 3.3e-230 802.4 731 57.6
FAN18G3000 Fragaria x ananassa HOM05D005554 ORTHO05D007823 3.3e-230 802.4 726 57.6
Solyc08g081170.4 Solanum lycopersicum HOM05D005554 ORTHO05D007823 4.4e-230 802.0 731 57.0
COL.COLO4_34475 Corchorus olitorius HOM05D005554 ORTHO05D007823 7.4e-230 801.2 721 57.6
FAN13G2706 Fragaria x ananassa HOM05D005554 ORTHO05D007823 1.1e-228 797.3 720 57.8
Lj2C185T6 Lonicera japonica HOM05D005554 ORTHO05D007823 1.4e-228 797.0 719 58.3
FAN08G3292 Fragaria x ananassa HOM05D005554 ORTHO05D007823 2.4e-228 796.2 726 57.3
Pp3c23_15810 Physcomitrium patens HOM05D005554 ORTHO05D007823 2.4e-228 796.2 518 75.1
Hma1.2p1_0377F.1_g139310 Hydrangea macrophylla HOM05D005554 ORTHO05D007823 3.1e-228 795.8 719 57.4
CAN.G774.53 Capsicum annuum HOM05D005554 ORTHO05D007823 1.2e-227 793.9 709 58.0
DCAR_000617 Daucus carota HOM05D005554 ORTHO05D007823 3.5e-227 792.3 726 56.5
Cpa.g.sc74.56 Carica papaya HOM05D005554 ORTHO05D007823 5.9e-227 791.6 727 56.1
Cc08_g14820 Coffea canephora HOM05D005554 ORTHO05D007823 1.0e-226 790.8 729 56.4
CANSAT21G2493 Cannabis sativa HOM05D005554 ORTHO05D007823 3.8e-226 788.9 726 56.5
ATR0680G162 Amborella trichopoda HOM05D005554 ORTHO05D007823 1.1e-225 787.3 724 57.5
CsaV3_5G002730 Cucumis sativus L. HOM05D005554 ORTHO05D007823 1.1e-225 787.3 739 56.4
MBI18_g45367_MAGBIO Magnolia biondii HOM05D005554 ORTHO05D007823 4.2e-225 785.4 653 62.5
MSTRG.13839 Avicennia marina HOM05D005554 ORTHO05D007823 2.1e-224 783.1 728 55.4
TWI15G0555 Tripterygium wilfordii HOM05D005554 ORTHO05D007823 2.1e-224 783.1 740 57.3
CiPaw.12G092300 Carya illinoinensis HOM05D005554 ORTHO05D007823 1.1e-222 777.3 743 54.6
THA.LOC104823588 Tarenaya hassleriana HOM05D005554 ORTHO05D007823 2.0e-222 776.5 749 54.9
SMO147G0132 Selaginella moellendorffii HOM05D005554 ORTHO05D007823 2.2e-221 773.1 529 71.3
Sabra01G0078000 Salix brachista HOM05D005554 ORTHO05D007823 6.3e-221 771.5 769 54.4
Manes.02G019800 Manihot esculenta HOM05D005554 ORTHO05D007823 1.8e-220 770.0 741 55.3
MELO3C005683.2 Cucumis melo HOM05D005554 ORTHO05D007823 4.1e-220 768.8 731 55.5
Nitab4.5_0010813g0010 Nicotiana tabacum HOM05D005554 ORTHO05D007823 4.1e-220 768.8 774 53.2
Lalb_Chr05g0224711 Lupinus albus HOM05D005554 ORTHO05D007823 5.3e-220 768.5 721 55.9
CDE05G1777 Ceratophyllum demersum HOM05D005554 ORTHO05D007823 2.0e-219 766.5 717 55.9
Ah.10g034840 Amaranthus hybridus HOM05D005554 ORTHO05D007823 3.6e-216 755.7 750 54.1
unitig_26.g9706 Utricularia gibba HOM05D005554 ORTHO05D007823 4.7e-216 755.4 724 54.7
arahy.Tifrunner.gnm1.ann1.C4WXPV Arachis hypogaea HOM05D005554 ORTHO05D007823 1.8e-215 753.4 727 54.7
Hund14815 Selenicereus undatus HOM05D005554 ORTHO05D007823 3.0e-215 752.7 730 53.3
Sp2g00970 Schrenkiella parvula HOM05D005554 ORTHO05D007823 4.0e-215 752.3 749 52.7
EL10Ac6g14928 Beta vulgaris HOM05D005554 ORTHO05D007823 6.8e-215 751.5 743 53.6
Glyma.08G015200 Glycine max HOM05D005554 ORTHO05D007823 6.8e-215 751.5 718 54.7
Thhalv10023292m.g Eutrema salsugineum HOM05D005554 ORTHO05D007823 8.8e-215 751.1 761 53.0
Aa31LG2G890 Aethionema arabicum HOM05D005554 ORTHO05D007823 1.2e-214 750.7 740 53.2
arahy.Tifrunner.gnm1.ann1.CVD0A8 Arachis hypogaea HOM05D005554 ORTHO05D007823 1.2e-214 750.7 727 54.6
Carub.0002s0117 Capsella rubella HOM05D005554 ORTHO05D007823 1.5e-214 750.4 770 52.3
AUR62003173 Chenopodium quinoa HOM05D005554 ORTHO05D007823 1.5e-214 750.4 735 53.6
ECA246G2370 Erigeron canadensis HOM05D005554 ORTHO05D007823 3.7e-213 745.7 740 54.3
vmacro11364 Vaccinium macrocarpon HOM05D005554 ORTHO05D007823 8.3e-213 744.6 785 52.0
Sc01g0009640 Simmondsia chinensis HOM05D005554 ORTHO05D007823 1.1e-212 744.2 729 54.0
AT1G63680 Arabidopsis thaliana HOM05D005554 ORTHO05D007823 1.4e-212 743.8 762 52.8
BcaB07g31556 Brassica carinata HOM05D005554 ORTHO05D007823 1.8e-212 743.4 761 52.4
Psat7g032760 Pisum sativum HOM05D005554 ORTHO05D007823 2.4e-212 743.0 719 54.4
AL2G11550 Arabidopsis lyrata HOM05D005554 ORTHO05D007823 3.1e-212 742.7 762 52.9
Ca_17525_v3 Cicer arietinum L. HOM05D005554 ORTHO05D007823 5.4e-212 741.9 719 54.5
Glyma.05G208600 Glycine max HOM05D005554 ORTHO05D007823 5.4e-212 741.9 718 54.2
Glyma.05G208921 Glycine max HOM05D005554 ORTHO05D007823 5.4e-212 741.9 718 54.2
CBR_g32224 Chara braunii HOM05D005554 ORTHO05D007823 9.1e-212 741.1 585 62.7
Lj4g0004686 Lotus japonicus HOM05D005554 ORTHO05D007823 9.1e-212 741.1 726 55.2
BcaC04g22690 Brassica carinata HOM05D005554 ORTHO05D007823 1.6e-211 740.3 758 52.2
A09p13810 Brassica napus HOM05D005554 ORTHO05D007823 2.7e-211 739.6 757 52.3
TPR.G12960 Trifolium pratense HOM05D005554 ORTHO05D007823 1.7e-210 736.9 725 54.2
BraA09t37033Z Brassica rapa HOM05D005554 ORTHO05D007823 2.2e-210 736.5 757 52.3
HanXRQChr06g0165871 Helianthus annuus HOM05D005554 ORTHO05D007823 2.9e-210 736.1 736 53.3
BolC9t54561H Brassica oleracea HOM05D005554 ORTHO05D007823 1.5e-209 733.8 752 52.1
C09p16520 Brassica napus HOM05D005554 ORTHO05D007823 3.2e-209 732.6 752 52.1
Phvul.002G290300 Phaseolus vulgaris HOM05D005554 ORTHO05D007823 4.2e-209 732.3 718 53.9
CARHR047660 Cardamine hirsuta HOM05D005554 ORTHO05D007823 5.5e-209 731.9 761 52.3
VMungo0251G0638 Vigna mungo HOM05D005554 ORTHO05D007823 2.1e-208 729.9 723 53.7
AUR62007990 Chenopodium quinoa HOM05D005554 ORTHO05D007823 4.7e-208 728.8 699 53.9
Medtr8g098345 Medicago truncatula HOM05D005554 ORTHO05D007823 8.0e-208 728.0 714 54.5
Lsat_1_v5_gn_3_6620 Lactuca sativa HOM05D005554 ORTHO05D007823 2.0e-206 723.4 729 53.5
ClCG01G002630 Citrullus lanatus HOM05D005554 ORTHO05D007823 1.7e-205 720.3 679 57.0
FvH4_5g02610 Fragaria vesca HOM05D005554 ORTHO05D007823 6.6e-202 708.4 672 56.0
Sed0016596 Sechium edule HOM05D005554 ORTHO05D007823 6.1e-200 701.8 674 55.6
SGA_v2.0_scaffold144G35937 Striga asiatica HOM05D005554 ORTHO05D007823 8.9e-199 698.0 686 54.8
Gohir.A03G016800 Gossypium hirsutum HOM05D005554 ORTHO05D007823 3.5e-195 686.0 551 61.3
Gorai.003G158300 Gossypium raimondii HOM05D005554 ORTHO05D007823 7.8e-195 684.9 541 62.5
HPP92_014728 Vanilla planifolia HOM05D005554 ORTHO05D007823 5.0e-194 682.2 554 58.8
Haze_08788 Corylus avellana HOM05D005554 ORTHO05D007823 9.2e-188 661.4 723 50.6
Os10g0548900 Oryza sativa ssp. japonica HOM05D005554 ORTHO05D007823 2.5e-185 653.3 726 49.0
Zm00001eb391750 Zea mays HOM05D005554 ORTHO05D007823 6.2e-184 648.7 722 49.3
Gohir.D03G151100 Gossypium hirsutum HOM05D005554 ORTHO05D007823 1.7e-162 577.4 414 67.9
Cfa012222 Carpinus fangiana HOM05D005554 ORTHO05D007823 2.4e-151 540.4 581 52.3
GSVIVG01019746001 Vitis vinifera HOM05D005554 ORTHO05D007823 3.9e-146 523.1 403 63.5
HPP92_020853 Vanilla planifolia HOM05D005554 ORTHO05D007823 3.3e-145 520.0 414 58.9
Lj2C0T8 Lonicera japonica HOM05D005554 ORTHO05D007823 5.9e-126 456.1 343 65.9
HPP92_008494 Vanilla planifolia HOM05D005554 ORTHO05D007823 3.4e-118 430.3 269 73.6
PRCOL_00002248 Prasinoderma coloniale HOM05D005554 ORTHO05D007823 4.0e-98 363.6 675 36.9
MCO12G378 Micromonas commoda HOM05D005554 ORTHO05D007823 9.1e-95 352.4 492 40.0
CAN.G20.10 Capsicum annuum HOM05D005554 ORTHO05D007823 2.8e-75 287.7 267 55.8
Cre12.g519900 Chlamydomonas reinhardtii HOM05D005554 ORTHO05D007823 9.8e-73 279.3 656 33.1
HPP92_008493 Vanilla planifolia HOM05D005554 ORTHO05D007823 9.2e-71 272.7 275 49.8
Oeu007749.1 Olea europaea HOM05D005554 ORTHO05D007823 2.9e-64 251.1 623 34.2
Actinidia02000 Actinidia chinensis HOM05D005554 ORTHO05D007823 1.6e-59 235.3 355 41.7
SEGI_34096 Sequoiadendron giganteum HOM05D005554 ORTHO05D007823 6.9e-42 176.8 99 79.8
Lj2C0T9 Lonicera japonica HOM05D005554 ORTHO05D007823 7.6e-33 146.7 270 40.0
CSS0006848 Camellia sinensis var. sinensis HOM05D005554 ORTHO05D007823 1.6e-30 139.0 83 72.3
BcaB04g18522 Brassica carinata HOM05D005554 ORTHO05D021652 2.5e-15 88.6 112 45.5
MD14G1106300 Malus domestica HOM05D005554 ORTHO05D007823 1.2e-14 86.3 54 66.7
Sabra03G0091300 Salix brachista HOM05D008679 ORTHO05D010804 1.8e-13 82.4 103 40.8
BcaC06g33105 Brassica carinata HOM05D005554 ORTHO05D021652 3.9e-13 81.3 157 36.9
Pp3c5_9920 Physcomitrium patens HOM05D005554 ORTHO05D007823 2.5e-12 78.6 82 54.9
Pp3c3_2590 Physcomitrium patens HOM05D005554 ORTHO05D313840 5.3e-10 70.9 82 48.8
MD14G1106200 Malus domestica HOM05D005554 ORTHO05D007823 7.7e-09 67.0 41 75.6
BcaB06g26524 Brassica carinata HOM05D005554 ORTHO05D021652 6.5e-08 63.9 73 47.9
BcaB07g30213 Brassica carinata HOM05D005554 ORTHO05D021652 1.6e-06 59.3 73 45.2


User provided reference genes

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