Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c24_12510 Physcomitrium patens HOM05D006362 ORTHO05D008295 0.0e+00 1124.8 571 100.0
Pp3c23_6050 Physcomitrium patens HOM05D006362 ORTHO05D008295 2.7e-231 805.4 554 76.5
Mapoly0021s0009 Marchantia polymorpha HOM05D006362 ORTHO05D008295 1.2e-197 693.7 569 62.6
SMO115G0345 Selaginella moellendorffii HOM05D006362 ORTHO05D008295 1.3e-177 627.1 563 58.3
TAR626G1624 Trochodendron aralioides HOM05D006362 ORTHO05D008295 8.6e-177 624.4 562 57.8
Atru.chr2.3247 Acer truncatum HOM05D006362 ORTHO05D008295 3.1e-174 615.9 563 57.2
Manes.15G074800 Manihot esculenta HOM05D006362 ORTHO05D008295 1.3e-172 610.5 574 56.3
Gorai.002G084800 Gossypium raimondii HOM05D006362 ORTHO05D008295 1.7e-172 610.1 564 55.7
Aqoxy1G03661 Aquilegia oxysepala HOM05D006362 ORTHO05D008295 2.9e-172 609.4 570 55.8
GSVIVG01001989001 Vitis vinifera HOM05D006362 ORTHO05D008295 3.8e-172 609.0 565 57.3
Thecc.07G046200 Theobroma cacao HOM05D006362 ORTHO05D008295 6.4e-172 608.2 564 56.0
Dinv40729 Davidia involucrata HOM05D006362 ORTHO05D008295 1.4e-171 607.1 563 56.8
Gohir.A01G076501 Gossypium hirsutum HOM05D006362 ORTHO05D008295 1.4e-171 607.1 564 55.5
ATR0697G203 Amborella trichopoda HOM05D006362 ORTHO05D008295 4.2e-171 605.5 564 55.5
Hma1.2p1_1344F.1_g277040 Hydrangea macrophylla HOM05D006362 ORTHO05D008295 1.2e-170 604.0 557 57.1
Potri.011G135800 Populus trichocarpa HOM05D006362 ORTHO05D008295 3.5e-170 602.4 571 55.9
TWI38G1299 Tripterygium wilfordii HOM05D006362 ORTHO05D008295 3.5e-170 602.4 564 56.6
MD03G1209000 Malus domestica HOM05D006362 ORTHO05D008295 3.0e-169 599.4 563 55.6
Gohir.D01G064000 Gossypium hirsutum HOM05D006362 ORTHO05D008295 3.9e-169 599.0 564 55.0
Nn1g07069 Nelumbo nucifera HOM05D006362 ORTHO05D008295 3.9e-169 599.0 548 56.0
Ciclev10007871m.g Citrus clementina HOM05D006362 ORTHO05D008295 6.6e-169 598.2 565 56.3
PSO832G4364 Papaver somniferum HOM05D006362 ORTHO05D008295 6.6e-169 598.2 570 55.6
arahy.Tifrunner.gnm1.ann1.Z96I2W Arachis hypogaea HOM05D006362 ORTHO05D008295 1.1e-168 597.4 563 55.1
Eucgr.F03442 Eucalyptus grandis HOM05D006362 ORTHO05D008295 1.5e-168 597.0 575 56.5
QL08p012554 Quercus lobata HOM05D006362 ORTHO05D008295 2.5e-168 596.3 562 55.0
FvH4_4g07170 Fragaria vesca HOM05D006362 ORTHO05D008295 7.3e-168 594.7 573 55.3
ECA240G1610 Erigeron canadensis HOM05D006362 ORTHO05D008295 9.6e-168 594.3 574 55.2
Sed0025840 Sechium edule HOM05D006362 ORTHO05D008295 9.6e-168 594.3 567 54.3
FAN12G0341 Fragaria x ananassa HOM05D006362 ORTHO05D008295 1.3e-167 594.0 573 55.3
Lalb_Chr03g0030071 Lupinus albus HOM05D006362 ORTHO05D008295 1.6e-167 593.6 563 55.4
Gorai.009G425700 Gossypium raimondii HOM05D006362 ORTHO05D008295 2.1e-167 593.2 569 54.8
CsaV3_1G044730 Cucumis sativus L. HOM05D006362 ORTHO05D008295 2.8e-167 592.8 565 54.3
Lj3g0015245 Lotus japonicus HOM05D006362 ORTHO05D008295 2.8e-167 592.8 569 56.2
RcHm_v2.0_Chr4g0399351 Rosa chinensis HOM05D006362 ORTHO05D008295 2.8e-167 592.8 571 55.0
Duzib268G0905 Durio zibethinus HOM05D006362 ORTHO05D008295 3.6e-167 592.4 564 54.8
Glyma.06G271800 Glycine max HOM05D006362 ORTHO05D008295 4.8e-167 592.0 562 56.2
AagrBONN_evm.TU.Sc2ySwM_117.2426 Anthoceros agrestis HOM05D006362 ORTHO05D008295 6.2e-167 591.7 574 54.2
Oeu021406.2 Olea europaea HOM05D006362 ORTHO05D008295 8.1e-167 591.3 576 54.7
HanXRQChr13g0407741 Helianthus annuus HOM05D006362 ORTHO05D008295 1.1e-166 590.9 561 55.3
FAN22G0212 Fragaria x ananassa HOM05D006362 ORTHO05D008295 3.1e-166 589.3 582 54.6
TPR.G25875 Trifolium pratense HOM05D006362 ORTHO05D008295 4.0e-166 589.0 564 55.5
CANSAT11G0353 Cannabis sativa HOM05D006362 ORTHO05D008295 5.3e-166 588.6 563 54.9
MELO3C018085.2 Cucumis melo HOM05D006362 ORTHO05D008295 5.3e-166 588.6 565 54.0
Sc14g0006480 Simmondsia chinensis HOM05D006362 ORTHO05D008295 5.3e-166 588.6 569 54.8
Thhalv10020417m.g Eutrema salsugineum HOM05D006362 ORTHO05D008295 2.0e-165 586.6 569 54.7
HPP92_009387 Vanilla planifolia HOM05D006362 ORTHO05D008295 4.4e-165 585.5 559 54.9
THA.LOC104818092 Tarenaya hassleriana HOM05D006362 ORTHO05D008295 5.8e-165 585.1 581 53.5
A03p39180 Brassica napus HOM05D006362 ORTHO05D008295 1.3e-164 583.9 573 54.6
Carub.0003s1481 Capsella rubella HOM05D006362 ORTHO05D008295 1.3e-164 583.9 568 54.6
Prupe.4G206200 Prunus persica HOM05D006362 ORTHO05D008295 1.3e-164 583.9 548 56.9
BolC3t17030H Brassica oleracea HOM05D006362 ORTHO05D008295 1.7e-164 583.6 573 54.6
Medtr4g081050 Medicago truncatula HOM05D006362 ORTHO05D008295 2.2e-164 583.2 566 54.9
C03p47540 Brassica napus HOM05D006362 ORTHO05D008295 2.9e-164 582.8 573 54.6
BraA03t13067Z Brassica rapa HOM05D006362 ORTHO05D008295 2.9e-164 582.8 573 54.6
CARHR090140 Cardamine hirsuta HOM05D006362 ORTHO05D008295 4.9e-164 582.0 561 55.1
Psat7g162880 Pisum sativum HOM05D006362 ORTHO05D008295 1.1e-163 580.9 566 54.4
AL3G27550 Arabidopsis lyrata HOM05D006362 ORTHO05D008295 1.9e-163 580.1 568 54.6
Solyc10g006410.3 Solanum lycopersicum HOM05D006362 ORTHO05D008295 2.4e-163 579.7 567 53.6
SGA_v2.0_scaffold80G25930 Striga asiatica HOM05D006362 ORTHO05D008295 3.2e-163 579.3 572 53.7
Sp3g13370 Schrenkiella parvula HOM05D006362 ORTHO05D008295 7.1e-163 578.2 568 54.0
Aa31LG8G2360 Aethionema arabicum HOM05D006362 ORTHO05D008295 9.3e-163 577.8 567 53.8
AT3G15160 Arabidopsis thaliana HOM05D006362 ORTHO05D008295 2.7e-162 576.2 568 54.2
Sopen10g002360 Solanum pennellii HOM05D006362 ORTHO05D008295 2.7e-162 576.2 567 53.4
Ah.06g182950 Amaranthus hybridus HOM05D006362 ORTHO05D008295 3.5e-162 575.9 574 52.8
Cfa020397 Carpinus fangiana HOM05D006362 ORTHO05D008295 1.3e-161 573.9 549 55.0
arahy.Tifrunner.gnm1.ann1.GJJ2CM Arachis hypogaea HOM05D006362 ORTHO05D008295 1.7e-161 573.5 554 54.7
Nitab4.5_0002342g0020 Nicotiana tabacum HOM05D006362 ORTHO05D008295 2.3e-161 573.2 567 54.1
CAN.G1781.12 Capsicum annuum HOM05D006362 ORTHO05D008295 2.5e-160 569.7 555 54.1
Ca_18860_v3 Cicer arietinum L. HOM05D006362 ORTHO05D008295 4.8e-159 565.5 552 55.4
CDE05G0917 Ceratophyllum demersum HOM05D006362 ORTHO05D008295 6.2e-159 565.1 554 54.3
BcaC01g03890 Brassica carinata HOM05D006362 ORTHO05D008295 1.1e-158 564.3 595 51.9
Cc05_g13400 Coffea canephora HOM05D006362 ORTHO05D008295 1.1e-158 564.3 570 53.7
AUR62020525 Chenopodium quinoa HOM05D006362 ORTHO05D008295 1.8e-158 563.5 551 54.1
Phvul.011G136800 Phaseolus vulgaris HOM05D006362 ORTHO05D008295 3.1e-158 562.8 552 56.0
Gohir.A04G020300 Gossypium hirsutum HOM05D006362 ORTHO05D008295 9.9e-157 557.8 573 52.9
PGR031G2573 Punica granatum HOM05D006362 ORTHO05D008295 9.9e-157 557.8 550 54.4
DCAR_022536 Daucus carota HOM05D006362 ORTHO05D008295 3.8e-156 555.8 585 52.6
Os04g0626900 Oryza sativa ssp. japonica HOM05D006362 ORTHO05D008295 4.9e-156 555.4 563 51.7
Haze_09637 Corylus avellana HOM05D006362 ORTHO05D008295 2.5e-152 543.1 630 48.7
Lj1C868T5 Lonicera japonica HOM05D006362 ORTHO05D008295 2.8e-151 539.7 542 55.7
Peaxi162Scf00387g00613 Petunia axillaris HOM05D006362 ORTHO05D008295 3.7e-151 539.3 555 53.3
EL10Ac4g07932 Beta vulgaris HOM05D006362 ORTHO05D008295 1.5e-149 533.9 563 52.2
Rhsim06G0213400 Rhododendron simsii HOM05D006362 ORTHO05D008295 2.9e-148 529.6 609 49.6
ClCG05G014560 Citrullus lanatus HOM05D006362 ORTHO05D008295 1.2e-146 524.2 584 50.5
COL.COLO4_09973 Corchorus olitorius HOM05D004186 ORTHO05D006965 2.7e-146 523.1 566 50.4
AUR62015672 Chenopodium quinoa HOM05D006362 ORTHO05D008295 1.3e-145 520.8 574 49.8
Migut.M01793 Erythranthe guttata HOM05D006362 ORTHO05D008295 1.8e-145 520.4 560 49.8
FAN17G1244 Fragaria x ananassa HOM05D006362 ORTHO05D008295 1.1e-142 511.1 580 50.7
Sabra11G0122000 Salix brachista HOM05D006362 ORTHO05D008295 1.3e-140 504.2 605 48.4
Lsat_1_v5_gn_5_81640 Lactuca sativa HOM05D006362 ORTHO05D008295 1.9e-139 500.4 555 51.2
Hund23291 Selenicereus undatus HOM05D006362 ORTHO05D008295 5.1e-137 492.3 517 52.2
Nitab4.5_0002229g0190 Nicotiana tabacum HOM05D006362 ORTHO05D008295 7.4e-136 488.4 587 47.0
CiPaw.11G185900 Carya illinoinensis HOM05D006362 ORTHO05D008295 9.4e-131 471.5 431 56.4
Gohir.D05G366200 Gossypium hirsutum HOM05D006362 ORTHO05D008295 5.1e-129 465.7 435 54.9
vmacro11753 Vaccinium macrocarpon HOM05D006362 ORTHO05D008295 7.2e-107 392.1 684 36.8
BolC3t17019H Brassica oleracea HOM05D006362 ORTHO05D008295 4.0e-81 306.6 324 51.9
PGSC0003DMG403014396 Solanum tuberosum HOM05D006362 ORTHO05D008295 1.9e-78 297.7 273 55.3
Zm00001eb070060 Zea mays HOM05D006362 ORTHO05D008295 2.4e-70 270.8 274 50.7
HPP92_009392 Vanilla planifolia HOM05D006362 ORTHO05D008295 2.1e-69 267.7 276 50.0
CSS0013960 Camellia sinensis var. sinensis HOM05D006362 ORTHO05D008295 9.2e-62 242.3 218 55.5
CBR_g57499 Chara braunii HOM05D006362 ORTHO05D008295 3.1e-57 227.3 240 49.6
SEGI_18975 Sequoiadendron giganteum HOM05D006362 ORTHO05D008295 3.0e-52 210.7 163 65.6
PGSC0003DMG402014396 Solanum tuberosum HOM05D006362 ORTHO05D008295 2.8e-50 204.1 198 53.0
SHI31860 Sapria himalayana HOM05D006362 ORTHO05D008295 4.9e-31 140.2 143 50.3
SEGI_13710 Sequoiadendron giganteum HOM05D006362 ORTHO05D008295 5.7e-27 126.7 118 52.5
Cpa.g.sc131.92 Carica papaya HOM05D006362 ORTHO05D008295 1.1e-25 122.5 113 55.8
SMO228G0126 Selaginella moellendorffii HOM05D006362 ORTHO05D008295 4.2e-22 110.5 200 36.5
CBR_g57501 Chara braunii HOM05D006362 ORTHO05D008295 7.2e-22 109.8 118 50.0
Gorai.002G084600 Gossypium raimondii HOM05D006362 ORTHO05D008295 1.2e-21 109.0 117 47.0
VMungo0251G2436 Vigna mungo HOM05D006362 ORTHO05D008295 3.6e-21 107.5 113 55.8
SMO347G0562 Selaginella moellendorffii HOM05D006362 ORTHO05D008295 4.6e-21 107.1 179 39.1
Gohir.D01G063866 Gossypium hirsutum HOM05D006362 ORTHO05D008295 8.7e-20 102.8 117 45.3
Rhsim12G0205700 Rhododendron simsii HOM05D006362 ORTHO05D008295 3.3e-19 100.9 294 31.0
Hma1.2p1_1609F.1_g293480 Hydrangea macrophylla HOM05D006362 ORTHO05D008295 1.6e-18 98.6 172 40.1
HPP92_009393 Vanilla planifolia HOM05D006362 ORTHO05D008295 1.1e-17 95.9 94 54.3
SMO111G0176 Selaginella moellendorffii HOM05D013632 ORTHO05D008295 6.9e-17 93.2 97 47.4
HanXRQChr16g0507081 Helianthus annuus HOM05D006362 ORTHO05D008295 6.1e-13 80.1 63 63.5
SMO122G0015 Selaginella moellendorffii HOM05D006362 ORTHO05D374567 1.0e-12 79.3 98 44.9
SMO118G0508 Selaginella moellendorffii HOM05D006362 ORTHO05D008295 1.4e-12 79.0 208 30.8
SMO167G0061 Selaginella moellendorffii HOM05D006362 ORTHO05D008295 8.8e-12 76.3 141 39.0
SMO009G0006 Selaginella moellendorffii HOM05D013632 ORTHO05D379378 2.4e-09 68.2 157 33.8
SMO144G0005 Selaginella moellendorffii HOM05D013632 ORTHO05D378182 2.6e-08 64.7 181 31.5
SMO014G0021 Selaginella moellendorffii HOM05D006362 ORTHO05D008295 5.9e-08 63.5 191 29.3
BcaB04g20946 Brassica carinata HOM05D006362 ORTHO05D008295 3.8e-07 60.8 45 57.8


User provided reference genes

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