Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c23_9310 Physcomitrium patens HOM05D002285 ORTHO05D009255 1.2e-77 293.1 148 100.0
Pp3c24_8050 Physcomitrium patens HOM05D002285 ORTHO05D009255 1.7e-44 183.0 144 66.7
Pp3c20_16540 Physcomitrium patens HOM05D002285 ORTHO05D009255 2.3e-36 156.0 119 64.7
Mapoly0042s0072 Marchantia polymorpha HOM05D002285 ORTHO05D009255 1.1e-25 120.6 152 41.4
AagrBONN_evm.TU.Sc2ySwM_228.1252 Anthoceros agrestis HOM05D002285 ORTHO05D009255 3.9e-20 102.1 132 40.9
TAR375G0607 Trochodendron aralioides HOM05D002285 ORTHO05D009255 1.2e-13 80.5 151 33.1
Duzib068G0948 Durio zibethinus HOM05D002285 ORTHO05D009255 3.0e-12 75.9 145 36.6
PSO063G2459 Papaver somniferum HOM05D002285 ORTHO05D009255 5.1e-12 75.1 111 40.5
PSO478G0928 Papaver somniferum HOM05D002285 ORTHO05D009255 5.1e-12 75.1 111 40.5
Atru.chr6.1776 Acer truncatum HOM05D002285 ORTHO05D009255 6.6e-12 74.7 138 36.2
Nitab4.5_0006693g0010 Nicotiana tabacum HOM05D002285 ORTHO05D009255 6.6e-12 74.7 147 36.7
Oeu028031.1 Olea europaea HOM05D002285 ORTHO05D009255 6.6e-12 74.7 129 38.8
MBI04_g31973_MAGBIO Magnolia biondii HOM05D002285 ORTHO05D009255 8.6e-12 74.3 103 43.7
Thecc.03G234200 Theobroma cacao HOM05D002285 ORTHO05D009255 1.1e-11 73.9 145 37.2
ATR0706G254 Amborella trichopoda HOM05D002285 ORTHO05D009255 3.3e-11 72.4 126 35.7
Solyc08g077290.1 Solanum lycopersicum HOM05D002285 ORTHO05D009255 3.3e-11 72.4 146 36.3
PSO782G1486 Papaver somniferum HOM05D002285 ORTHO05D009255 7.3e-11 71.2 103 40.8
Potri.001G147000 Populus trichocarpa HOM05D002285 ORTHO05D009255 1.2e-10 70.5 112 38.4
SHI10334 Sapria himalayana HOM05D002285 ORTHO05D009255 1.2e-10 70.5 150 32.7
Nitab4.5_0002055g0110 Nicotiana tabacum HOM05D002285 ORTHO05D009255 2.1e-10 69.7 146 36.3
Cfa014517 Carpinus fangiana HOM05D002285 ORTHO05D009255 2.8e-10 69.3 115 37.4
Gohir.D03G169500 Gossypium hirsutum HOM05D002285 ORTHO05D009255 2.8e-10 69.3 107 38.3
Manes.15G172700 Manihot esculenta HOM05D002285 ORTHO05D009255 2.8e-10 69.3 132 36.4
QL12p007193 Quercus lobata HOM05D002285 ORTHO05D009255 2.8e-10 69.3 116 37.9
CBR_g17970 Chara braunii HOM05D002285 ORTHO05D009255 4.7e-10 68.6 155 34.2
Gohir.A03G002800 Gossypium hirsutum HOM05D002285 ORTHO05D009255 6.2e-10 68.2 113 38.1
THA.LOC104806190 Tarenaya hassleriana HOM05D002285 ORTHO05D009255 6.2e-10 68.2 111 40.5
Sed0018690 Sechium edule HOM05D002285 ORTHO05D009255 8.1e-10 67.8 131 36.6
Aqoxy3G02523 Aquilegia oxysepala HOM05D002285 ORTHO05D009255 1.4e-09 67.0 116 33.6
MELO3C003372.2 Cucumis melo HOM05D002285 ORTHO05D009255 1.4e-09 67.0 151 36.4
SMO118G0142 Selaginella moellendorffii HOM05D002285 ORTHO05D009255 1.4e-09 67.0 124 33.1
Sopen08g025870 Solanum pennellii HOM05D002285 ORTHO05D009255 1.8e-09 66.6 92 44.6
Cc08_g01890 Coffea canephora HOM05D002285 ORTHO05D009255 2.4e-09 66.2 99 39.4
Gorai.003G179800 Gossypium raimondii HOM05D002285 ORTHO05D009255 2.4e-09 66.2 113 37.2
Sc07g0008790 Simmondsia chinensis HOM05D002285 ORTHO05D009255 2.4e-09 66.2 120 38.3
CiPaw.12G060200 Carya illinoinensis HOM05D002285 ORTHO05D009255 3.1e-09 65.9 131 35.1
BcaC06g31551 Brassica carinata HOM05D002285 ORTHO05D009255 4.0e-09 65.5 138 31.9
CDE06G0617 Ceratophyllum demersum HOM05D002285 ORTHO05D009255 4.0e-09 65.5 103 36.9
COL.COLO4_17111 Corchorus olitorius HOM05D002285 ORTHO05D009255 4.0e-09 65.5 129 33.3
Hund11271 Selenicereus undatus HOM05D002285 ORTHO05D009255 4.0e-09 65.5 154 34.4
PGSC0003DMG400024213 Solanum tuberosum HOM05D002285 ORTHO05D009255 4.0e-09 65.5 92 43.5
BraA06t27534Z Brassica rapa HOM05D002285 ORTHO05D009255 5.2e-09 65.1 147 29.9
CsaV3_3G049540 Cucumis sativus L. HOM05D002285 ORTHO05D009255 6.8e-09 64.7 147 35.4
Prupe.5G047100 Prunus persica HOM05D002285 ORTHO05D009255 6.8e-09 64.7 118 35.6
Duzib205G1165 Durio zibethinus HOM05D002285 ORTHO05D009255 8.9e-09 64.3 127 33.1
RcHm_v2.0_Chr7g0208261 Rosa chinensis HOM05D002285 ORTHO05D009255 8.9e-09 64.3 113 34.5
Sed0003788 Sechium edule HOM05D002285 ORTHO05D009255 1.2e-08 63.9 87 44.8
Ca_17655_v3 Cicer arietinum L. HOM05D002285 ORTHO05D009255 1.5e-08 63.5 88 44.3
VMungo0251G1000 Vigna mungo HOM05D002285 ORTHO05D009255 1.5e-08 63.5 95 44.2
A06p46600 Brassica napus HOM05D002285 ORTHO05D009255 2.0e-08 63.2 143 30.1
Peaxi162Scf00084g00092 Petunia axillaris HOM05D002285 ORTHO05D009255 2.0e-08 63.2 90 41.1
TWI31G1223 Tripterygium wilfordii HOM05D002285 ORTHO05D009255 2.6e-08 62.8 148 33.8
Cpa.g.sc516.1 Carica papaya HOM05D002285 ORTHO05D009255 4.4e-08 62.0 101 38.6
Phvul.002G269900 Phaseolus vulgaris HOM05D002285 ORTHO05D009255 4.4e-08 62.0 95 44.2
SEGI_19264 Sequoiadendron giganteum HOM05D002285 ORTHO05D009255 4.4e-08 62.0 109 29.4
Ciclev10032127m.g Citrus clementina HOM05D002285 ORTHO05D009255 5.8e-08 61.6 138 36.2
Lsat_1_v5_gn_5_187701 Lactuca sativa HOM05D002285 ORTHO05D009255 5.8e-08 61.6 144 35.4
Ah.12g053690 Amaranthus hybridus HOM05D002285 ORTHO05D009255 7.6e-08 61.2 97 36.1
FvH4_5g21140 Fragaria vesca HOM05D002285 ORTHO05D009255 9.9e-08 60.8 113 34.5
FAN08G0952 Fragaria x ananassa HOM05D002285 ORTHO05D009255 9.9e-08 60.8 113 32.7
FAN18G1893 Fragaria x ananassa HOM05D002285 ORTHO05D009255 9.9e-08 60.8 113 34.5
PGR042G0121 Punica granatum HOM05D002285 ORTHO05D009255 9.9e-08 60.8 148 31.8
FAN13G2873 Fragaria x ananassa HOM05D002285 ORTHO05D009255 1.3e-07 60.5 113 32.7
Medtr8g093080 Medicago truncatula HOM05D002285 ORTHO05D009255 2.2e-07 59.7 88 38.6
Aa31LG9G7580 Aethionema arabicum HOM05D002285 ORTHO05D009255 2.9e-07 59.3 102 40.2
Psat7g048120 Pisum sativum HOM05D002285 ORTHO05D009255 2.9e-07 59.3 101 38.6
EL10As14g24089 Beta vulgaris HOM05D002285 ORTHO05D009255 3.8e-07 58.9 147 33.3
Dinv25183 Davidia involucrata HOM05D002285 ORTHO05D009255 3.8e-07 58.9 88 40.9
Glyma.05G189200 Glycine max HOM05D002285 ORTHO05D009255 6.4e-07 58.2 89 38.2
MD06G1040800 Malus domestica HOM05D002285 ORTHO05D009255 8.4e-07 57.8 131 29.8
Eucgr.E00315 Eucalyptus grandis HOM05D002285 ORTHO05D009255 1.1e-06 57.4 74 44.6
Lalb_Chr07g0184551 Lupinus albus HOM05D002285 ORTHO05D009255 1.1e-06 57.4 92 39.1
BcaC06g34433 Brassica carinata HOM05D002285 ORTHO05D009255 1.9e-06 56.6 115 30.4
C07p28510 Brassica napus HOM05D002285 ORTHO05D009255 1.9e-06 56.6 115 30.4
BolC7t43391H Brassica oleracea HOM05D002285 ORTHO05D009255 1.9e-06 56.6 115 30.4
CSS0042705 Camellia sinensis var. sinensis HOM05D002285 ORTHO05D009255 1.9e-06 56.6 88 38.6
Lj4g0007705 Lotus japonicus HOM05D002285 ORTHO05D009255 1.9e-06 56.6 89 37.1
Dinv28914 Davidia involucrata HOM05D002285 ORTHO05D009255 2.4e-06 56.2 88 40.9
ECA246G1023 Erigeron canadensis HOM05D002285 ORTHO05D009255 4.2e-06 55.5 149 32.9
CAN.G1445.16 Capsicum annuum HOM05D002285 ORTHO05D009255 5.4e-06 55.1 112 35.7
HanXRQChr06g0167311 Helianthus annuus HOM05D002285 ORTHO05D009255 5.4e-06 55.1 127 35.4
AT5G45420 Arabidopsis thaliana HOM05D002285 ORTHO05D009255 7.1e-06 54.7 111 32.4


User provided reference genes

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