Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c23_6050 Physcomitrium patens HOM05D006362 ORTHO05D008295 0.0e+00 1080.9 551 100.0
Pp3c24_12510 Physcomitrium patens HOM05D006362 ORTHO05D008295 1.5e-231 806.2 554 76.5
Mapoly0021s0009 Marchantia polymorpha HOM05D006362 ORTHO05D008295 7.6e-162 574.7 556 56.7
Aqoxy1G03661 Aquilegia oxysepala HOM05D006362 ORTHO05D008295 1.9e-152 543.5 555 53.7
TAR626G1624 Trochodendron aralioides HOM05D006362 ORTHO05D008295 4.2e-152 542.3 553 54.2
Nn1g07069 Nelumbo nucifera HOM05D006362 ORTHO05D008295 3.0e-150 536.2 548 53.5
Atru.chr2.3247 Acer truncatum HOM05D006362 ORTHO05D008295 8.7e-150 534.6 553 54.2
Gorai.002G084800 Gossypium raimondii HOM05D006362 ORTHO05D008295 8.7e-150 534.6 566 52.5
Gohir.A01G076501 Gossypium hirsutum HOM05D006362 ORTHO05D008295 1.9e-149 533.5 571 52.5
Ciclev10007871m.g Citrus clementina HOM05D006362 ORTHO05D008295 4.8e-148 528.9 556 54.0
GSVIVG01001989001 Vitis vinifera HOM05D006362 ORTHO05D008295 8.1e-148 528.1 555 53.7
Hma1.2p1_1344F.1_g277040 Hydrangea macrophylla HOM05D006362 ORTHO05D008295 9.0e-147 524.6 562 53.4
Thecc.07G046200 Theobroma cacao HOM05D006362 ORTHO05D008295 9.0e-147 524.6 560 53.2
Prupe.4G206200 Prunus persica HOM05D006362 ORTHO05D008295 2.6e-146 523.1 555 52.6
Dinv40729 Davidia involucrata HOM05D006362 ORTHO05D008295 3.4e-146 522.7 558 53.2
TWI38G1299 Tripterygium wilfordii HOM05D006362 ORTHO05D008295 3.4e-146 522.7 555 53.7
Gohir.D01G064000 Gossypium hirsutum HOM05D006362 ORTHO05D008295 5.8e-146 521.9 571 52.0
Potri.011G135800 Populus trichocarpa HOM05D006362 ORTHO05D008295 7.6e-146 521.5 556 53.4
PSO832G4364 Papaver somniferum HOM05D006362 ORTHO05D008295 1.7e-145 520.4 559 53.0
SGA_v2.0_scaffold80G25930 Striga asiatica HOM05D006362 ORTHO05D008295 3.8e-145 519.2 589 49.9
SMO115G0345 Selaginella moellendorffii HOM05D006362 ORTHO05D008295 8.4e-145 518.1 547 53.2
Cfa020397 Carpinus fangiana HOM05D006362 ORTHO05D008295 1.1e-144 517.7 550 52.7
arahy.Tifrunner.gnm1.ann1.Z96I2W Arachis hypogaea HOM05D006362 ORTHO05D008295 9.3e-144 514.6 553 51.9
CANSAT11G0353 Cannabis sativa HOM05D006362 ORTHO05D008295 1.2e-143 514.2 555 52.3
Lalb_Chr03g0030071 Lupinus albus HOM05D006362 ORTHO05D008295 1.2e-143 514.2 551 52.8
Solyc10g006410.3 Solanum lycopersicum HOM05D006362 ORTHO05D008295 1.6e-143 513.8 558 51.8
ATR0697G203 Amborella trichopoda HOM05D006362 ORTHO05D008295 3.5e-143 512.7 548 51.3
FAN22G0212 Fragaria x ananassa HOM05D006362 ORTHO05D008295 3.5e-143 512.7 560 53.0
QL08p012554 Quercus lobata HOM05D006362 ORTHO05D008295 3.5e-143 512.7 551 52.1
Manes.15G074800 Manihot esculenta HOM05D006362 ORTHO05D008295 4.6e-143 512.3 556 52.3
CDE05G0917 Ceratophyllum demersum HOM05D006362 ORTHO05D008295 6.0e-143 511.9 559 51.9
Nitab4.5_0002342g0020 Nicotiana tabacum HOM05D006362 ORTHO05D008295 7.9e-143 511.5 558 52.3
arahy.Tifrunner.gnm1.ann1.GJJ2CM Arachis hypogaea HOM05D006362 ORTHO05D008295 1.3e-142 510.8 555 51.4
CsaV3_1G044730 Cucumis sativus L. HOM05D006362 ORTHO05D008295 1.3e-142 510.8 555 51.4
MD03G1209000 Malus domestica HOM05D006362 ORTHO05D008295 1.3e-142 510.8 551 51.5
Sopen10g002360 Solanum pennellii HOM05D006362 ORTHO05D008295 1.8e-142 510.4 558 51.6
FvH4_4g07170 Fragaria vesca HOM05D006362 ORTHO05D008295 2.3e-142 510.0 560 52.7
MELO3C018085.2 Cucumis melo HOM05D006362 ORTHO05D008295 3.0e-142 509.6 555 51.4
FAN12G0341 Fragaria x ananassa HOM05D006362 ORTHO05D008295 3.9e-142 509.2 560 52.7
Lj3g0015245 Lotus japonicus HOM05D006362 ORTHO05D008295 5.1e-142 508.8 555 53.5
Sed0025840 Sechium edule HOM05D006362 ORTHO05D008295 8.7e-142 508.1 555 51.4
Duzib268G0905 Durio zibethinus HOM05D006362 ORTHO05D008295 1.9e-141 506.9 554 51.4
Glyma.06G271800 Glycine max HOM05D006362 ORTHO05D008295 1.9e-141 506.9 553 53.3
Sc14g0006480 Simmondsia chinensis HOM05D006362 ORTHO05D008295 1.9e-141 506.9 561 52.0
RcHm_v2.0_Chr4g0399351 Rosa chinensis HOM05D006362 ORTHO05D008295 3.3e-141 506.1 557 52.1
TPR.G25875 Trifolium pratense HOM05D006362 ORTHO05D008295 4.3e-141 505.8 556 52.3
HPP92_009387 Vanilla planifolia HOM05D006362 ORTHO05D008295 7.4e-141 505.0 558 52.0
ECA240G1610 Erigeron canadensis HOM05D006362 ORTHO05D008295 2.1e-140 503.4 562 52.0
Phvul.011G136800 Phaseolus vulgaris HOM05D006362 ORTHO05D008295 2.1e-140 503.4 554 52.7
Eucgr.F03442 Eucalyptus grandis HOM05D006362 ORTHO05D008295 2.8e-140 503.1 556 53.6
PGR031G2573 Punica granatum HOM05D006362 ORTHO05D008295 6.2e-140 501.9 548 51.5
Psat7g162880 Pisum sativum HOM05D006362 ORTHO05D008295 8.2e-140 501.5 572 51.2
Ca_18860_v3 Cicer arietinum L. HOM05D006362 ORTHO05D008295 1.1e-139 501.1 553 52.3
HanXRQChr13g0407741 Helianthus annuus HOM05D006362 ORTHO05D008295 1.1e-139 501.1 549 51.4
CAN.G1781.12 Capsicum annuum HOM05D006362 ORTHO05D008295 1.8e-139 500.4 557 50.8
AUR62020525 Chenopodium quinoa HOM05D006362 ORTHO05D008295 1.8e-139 500.4 550 51.8
Gorai.009G425700 Gossypium raimondii HOM05D006362 ORTHO05D008295 4.0e-139 499.2 568 50.9
Medtr4g081050 Medicago truncatula HOM05D006362 ORTHO05D008295 4.0e-139 499.2 556 51.6
A03p39180 Brassica napus HOM05D006362 ORTHO05D008295 5.3e-139 498.8 555 51.5
BraA03t13067Z Brassica rapa HOM05D006362 ORTHO05D008295 5.3e-139 498.8 555 51.5
Thhalv10020417m.g Eutrema salsugineum HOM05D006362 ORTHO05D008295 5.3e-139 498.8 553 51.2
BolC3t17030H Brassica oleracea HOM05D006362 ORTHO05D008295 1.2e-138 497.7 555 51.4
THA.LOC104818092 Tarenaya hassleriana HOM05D006362 ORTHO05D008295 1.2e-138 497.7 560 50.2
C03p47540 Brassica napus HOM05D006362 ORTHO05D008295 1.5e-138 497.3 555 51.2
Carub.0003s1481 Capsella rubella HOM05D006362 ORTHO05D008295 2.6e-138 496.5 555 50.6
Ah.06g182950 Amaranthus hybridus HOM05D006362 ORTHO05D008295 1.0e-137 494.6 561 49.7
AT3G15160 Arabidopsis thaliana HOM05D006362 ORTHO05D008295 2.2e-137 493.4 555 50.6
Oeu021406.2 Olea europaea HOM05D006362 ORTHO05D008295 2.2e-137 493.4 556 49.8
CARHR090140 Cardamine hirsuta HOM05D006362 ORTHO05D008295 3.8e-137 492.7 552 50.7
AL3G27550 Arabidopsis lyrata HOM05D006362 ORTHO05D008295 8.4e-137 491.5 555 50.3
Cc05_g13400 Coffea canephora HOM05D006362 ORTHO05D008295 1.9e-136 490.3 554 50.4
Sp3g13370 Schrenkiella parvula HOM05D006362 ORTHO05D008295 3.2e-136 489.6 554 50.0
DCAR_022536 Daucus carota HOM05D006362 ORTHO05D008295 2.1e-135 486.9 580 49.5
Peaxi162Scf00387g00613 Petunia axillaris HOM05D006362 ORTHO05D008295 3.5e-135 486.1 532 52.3
Aa31LG8G2360 Aethionema arabicum HOM05D006362 ORTHO05D008295 6.0e-135 485.3 555 49.9
ClCG05G014560 Citrullus lanatus HOM05D006362 ORTHO05D008295 6.0e-135 485.3 547 51.4
Lj1C868T5 Lonicera japonica HOM05D006362 ORTHO05D008295 3.0e-134 483.0 513 54.8
EL10Ac4g07932 Beta vulgaris HOM05D006362 ORTHO05D008295 5.7e-133 478.8 565 49.6
Rhsim06G0213400 Rhododendron simsii HOM05D006362 ORTHO05D008295 1.6e-132 477.2 593 48.6
BcaC01g03890 Brassica carinata HOM05D006362 ORTHO05D008295 4.8e-132 475.7 577 49.0
AagrBONN_evm.TU.Sc2ySwM_117.2426 Anthoceros agrestis HOM05D006362 ORTHO05D008295 3.1e-131 473.0 553 49.2
Os04g0626900 Oryza sativa ssp. japonica HOM05D006362 ORTHO05D008295 4.1e-131 472.6 552 49.1
Haze_09637 Corylus avellana HOM05D006362 ORTHO05D008295 1.2e-130 471.1 599 47.6
Gohir.A04G020300 Gossypium hirsutum HOM05D006362 ORTHO05D008295 6.5e-129 465.3 570 49.5
COL.COLO4_09973 Corchorus olitorius HOM05D004186 ORTHO05D006965 1.3e-126 457.6 562 47.7
FAN17G1244 Fragaria x ananassa HOM05D006362 ORTHO05D008295 3.8e-121 439.5 582 47.1
Lsat_1_v5_gn_5_81640 Lactuca sativa HOM05D006362 ORTHO05D008295 1.6e-119 434.1 551 48.1
AUR62015672 Chenopodium quinoa HOM05D006362 ORTHO05D008295 2.3e-118 430.3 561 46.7
Nitab4.5_0002229g0190 Nicotiana tabacum HOM05D006362 ORTHO05D008295 1.5e-117 427.6 579 45.9
Migut.M01793 Erythranthe guttata HOM05D006362 ORTHO05D008295 5.7e-117 425.6 549 45.9
Sabra11G0122000 Salix brachista HOM05D006362 ORTHO05D008295 7.4e-117 425.2 598 45.8
Hund23291 Selenicereus undatus HOM05D006362 ORTHO05D008295 2.9e-113 413.3 498 49.4
CiPaw.11G185900 Carya illinoinensis HOM05D006362 ORTHO05D008295 1.4e-112 411.0 431 53.4
Gohir.D05G366200 Gossypium hirsutum HOM05D006362 ORTHO05D008295 2.4e-107 393.7 428 51.2
BolC3t17019H Brassica oleracea HOM05D006362 ORTHO05D008295 3.4e-85 320.1 326 53.7
vmacro11753 Vaccinium macrocarpon HOM05D006362 ORTHO05D008295 4.9e-84 316.2 645 36.0
Zm00001eb070060 Zea mays HOM05D006362 ORTHO05D008295 6.2e-71 272.7 291 49.8
CSS0013960 Camellia sinensis var. sinensis HOM05D006362 ORTHO05D008295 3.4e-61 240.4 220 56.4
HPP92_009392 Vanilla planifolia HOM05D006362 ORTHO05D008295 1.9e-56 224.6 276 47.8
PGSC0003DMG403014396 Solanum tuberosum HOM05D006362 ORTHO05D008295 8.1e-55 219.2 261 48.3
PGSC0003DMG402014396 Solanum tuberosum HOM05D006362 ORTHO05D008295 3.2e-51 207.2 198 54.0
SEGI_18975 Sequoiadendron giganteum HOM05D006362 ORTHO05D008295 1.6e-47 194.9 166 63.3
CBR_g57499 Chara braunii HOM05D006362 ORTHO05D008295 1.1e-43 182.2 240 45.4
SHI31860 Sapria himalayana HOM05D006362 ORTHO05D008295 4.0e-30 137.1 155 49.7
Cpa.g.sc131.92 Carica papaya HOM05D006362 ORTHO05D008295 1.8e-25 121.7 115 53.9
VMungo0251G2436 Vigna mungo HOM05D006362 ORTHO05D008295 2.0e-21 108.2 123 51.2
Rhsim12G0205700 Rhododendron simsii HOM05D006362 ORTHO05D008295 1.1e-19 102.4 293 33.4
CBR_g57501 Chara braunii HOM05D006362 ORTHO05D008295 5.5e-19 100.1 118 47.5
Gorai.002G084600 Gossypium raimondii HOM05D006362 ORTHO05D008295 7.1e-19 99.8 93 52.7
Hma1.2p1_1609F.1_g293480 Hydrangea macrophylla HOM05D006362 ORTHO05D008295 3.5e-18 97.4 188 36.7
Gohir.D01G063866 Gossypium hirsutum HOM05D006362 ORTHO05D008295 5.1e-17 93.6 93 50.5
HPP92_009393 Vanilla planifolia HOM05D006362 ORTHO05D008295 1.1e-16 92.4 106 50.0
HanXRQChr16g0507081 Helianthus annuus HOM05D006362 ORTHO05D008295 1.0e-12 79.3 70 58.6
SMO347G0562 Selaginella moellendorffii HOM05D006362 ORTHO05D008295 2.3e-09 68.2 169 35.5
SMO167G0061 Selaginella moellendorffii HOM05D006362 ORTHO05D008295 1.1e-06 59.3 70 55.7
SEGI_13710 Sequoiadendron giganteum HOM05D006362 ORTHO05D008295 1.8e-06 58.5 118 34.7
BcaB04g20946 Brassica carinata HOM05D006362 ORTHO05D008295 6.9e-06 56.6 45 57.8


User provided reference genes

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