Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c23_3420 Physcomitrium patens HOM05D003776 ORTHO05D004459 0.0e+00 4170.5 2101 100.0
Pp3c20_13260 Physcomitrium patens HOM05D003776 ORTHO05D004459 0.0e+00 2316.2 2129 60.5
Pp3c4_20350 Physcomitrium patens HOM05D003776 ORTHO05D004459 1.7e-291 1007.3 1033 52.1
Mapoly0052s0095 Marchantia polymorpha HOM05D003776 ORTHO05D004459 5.9e-255 885.9 1030 47.0
AagrBONN_evm.TU.Sc2ySwM_228.87 Anthoceros agrestis HOM05D003776 ORTHO05D004459 6.3e-241 839.3 1036 45.8
GSVIVG01015528001 Vitis vinifera HOM05D003776 ORTHO05D004459 2.0e-218 764.6 1038 41.6
Nn8g39448 Nelumbo nucifera HOM05D003776 ORTHO05D004459 9.8e-218 762.3 1042 42.2
Thecc.09G126200 Theobroma cacao HOM05D003776 ORTHO05D004459 8.3e-217 759.2 1034 41.8
TAR625G0211 Trochodendron aralioides HOM05D003776 ORTHO05D004459 6.6e-214 749.6 1037 41.4
Aqoxy7G02178 Aquilegia oxysepala HOM05D003776 ORTHO05D004459 1.1e-213 748.8 1044 41.2
Aqoxy3G01756 Aquilegia oxysepala HOM05D003776 ORTHO05D004459 1.9e-213 748.0 1044 41.2
Manes.05G119700 Manihot esculenta HOM05D003776 ORTHO05D004459 1.9e-213 748.0 1053 41.6
Rhsim03G0247900 Rhododendron simsii HOM05D003776 ORTHO05D004459 2.5e-213 747.7 1074 39.9
Potri.006G119600 Populus trichocarpa HOM05D003776 ORTHO05D004459 4.2e-213 746.9 1050 40.5
Duzib168G2222 Durio zibethinus HOM05D003776 ORTHO05D004459 3.6e-212 743.8 1041 41.0
COL.COLO4_35084 Corchorus olitorius HOM05D003776 ORTHO05D004459 8.0e-212 742.7 1034 41.4
Cc06_g08530 Coffea canephora HOM05D003776 ORTHO05D004459 5.2e-211 740.0 1035 40.8
SMO347G0235 Selaginella moellendorffii HOM05D003776 ORTHO05D004459 6.8e-211 739.6 1051 41.3
Atru.chr7.1164 Acer truncatum HOM05D003776 ORTHO05D004459 1.5e-210 738.4 1054 40.7
PSO170G4267 Papaver somniferum HOM05D003776 ORTHO05D004459 1.5e-210 738.4 1058 40.3
Lj3g0001115 Lotus japonicus HOM05D003776 ORTHO05D004459 2.6e-210 737.6 1052 40.6
Phvul.009G198200 Phaseolus vulgaris HOM05D003776 ORTHO05D004459 3.4e-210 737.3 1050 40.6
PSO455G0084 Papaver somniferum HOM05D003776 ORTHO05D004459 5.7e-210 736.5 1059 40.2
TWI34G1787 Tripterygium wilfordii HOM05D003776 ORTHO05D004459 9.8e-210 735.7 1051 40.1
Prupe.7G242500 Prunus persica HOM05D003776 ORTHO05D004459 1.7e-209 734.9 1038 40.2
Glyma.06G222100 Glycine max HOM05D003776 ORTHO05D004459 2.8e-209 734.2 1053 40.8
CANSAT11G0130 Cannabis sativa HOM05D003776 ORTHO05D004459 3.7e-209 733.8 1032 39.9
Cfa003371 Carpinus fangiana HOM05D003776 ORTHO05D004459 3.7e-209 733.8 1052 40.7
EL10Ac8g18652 Beta vulgaris HOM05D003776 ORTHO05D004459 1.8e-208 731.5 1052 40.4
Migut.J01158 Erythranthe guttata HOM05D003776 ORTHO05D004459 1.8e-208 731.5 1035 40.3
MD02G1032900 Malus domestica HOM05D003776 ORTHO05D004459 4.1e-208 730.3 1032 40.1
FvH4_1g03320 Fragaria vesca HOM05D003776 ORTHO05D004459 5.4e-208 729.9 1031 40.0
TPR.G21471 Trifolium pratense HOM05D003776 ORTHO05D004459 9.2e-208 729.2 1040 40.8
Medtr7g099880 Medicago truncatula HOM05D003776 ORTHO05D004459 1.2e-207 728.8 1040 40.9
Lsat_1_v5_gn_5_96021 Lactuca sativa HOM05D003776 ORTHO05D004459 2.7e-207 727.6 1044 40.9
RcHm_v2.0_Chr2g0088511 Rosa chinensis HOM05D003776 ORTHO05D004459 2.7e-207 727.6 1034 40.0
vmacro06129 Vaccinium macrocarpon HOM05D003776 ORTHO05D004459 3.5e-207 727.2 1087 38.9
Sopen12g002420 Solanum pennellii HOM05D003776 ORTHO05D004459 2.9e-206 724.2 1010 41.5
ATR0322G072 Amborella trichopoda HOM05D003776 ORTHO05D004459 3.9e-206 723.8 1036 40.4
FAN26G1438 Fragaria x ananassa HOM05D003776 ORTHO05D004459 3.9e-206 723.8 1031 40.1
FAN23G1640 Fragaria x ananassa HOM05D003776 ORTHO05D004459 6.6e-206 723.0 1031 40.0
Psat1g024680 Pisum sativum HOM05D003776 ORTHO05D004459 3.3e-205 720.7 1039 40.4
Solyc12g006480.2 Solanum lycopersicum HOM05D003776 ORTHO05D004459 3.3e-205 720.7 1033 41.1
Sed0006794 Sechium edule HOM05D003776 ORTHO05D004459 4.3e-205 720.3 1036 39.9
Lalb_Chr11g0072121 Lupinus albus HOM05D003776 ORTHO05D004459 5.6e-205 719.9 1046 40.6
ECA234G1804 Erigeron canadensis HOM05D003776 ORTHO05D004459 7.3e-205 719.5 1031 39.6
MSTRG.19598 Avicennia marina HOM05D003776 ORTHO05D004459 9.5e-205 719.2 1035 40.1
Ca_14403_v3 Cicer arietinum L. HOM05D003776 ORTHO05D004459 2.8e-204 717.6 1051 40.2
AUR62013362 Chenopodium quinoa HOM05D003776 ORTHO05D004459 8.0e-204 716.1 1052 40.1
Dinv36529 Davidia involucrata HOM05D003776 ORTHO05D004459 1.8e-203 714.9 1053 40.0
Sc08g0006640 Simmondsia chinensis HOM05D003776 ORTHO05D004459 1.8e-203 714.9 1032 39.9
CsaV3_2G002830 Cucumis sativus L. HOM05D003776 ORTHO05D004459 4.0e-203 713.8 1011 39.7
THA.LOC104808989 Tarenaya hassleriana HOM05D003776 ORTHO05D004459 5.8e-202 709.9 1029 39.5
Sabra06G0094200 Salix brachista HOM05D003776 ORTHO05D004459 9.8e-202 709.1 1087 38.8
HanXRQChr10g0315491 Helianthus annuus HOM05D003776 ORTHO05D004459 3.7e-201 707.2 1031 39.1
AUR62011127 Chenopodium quinoa HOM05D003776 ORTHO05D004459 4.9e-201 706.8 1050 39.6
Eucgr.C04218 Eucalyptus grandis HOM05D003776 ORTHO05D004459 6.4e-201 706.4 1034 39.4
Hund09133 Selenicereus undatus HOM05D003776 ORTHO05D004459 6.0e-199 699.9 1049 39.3
AT5G51200 Arabidopsis thaliana HOM05D003776 ORTHO05D004459 1.1e-197 695.7 1029 39.7
Gorai.001G042000 Gossypium raimondii HOM05D003776 ORTHO05D004459 1.1e-197 695.7 1046 39.3
CARHR118630 Cardamine hirsuta HOM05D003776 ORTHO05D004459 1.5e-197 695.3 1029 40.0
AL8G25470 Arabidopsis lyrata HOM05D003776 ORTHO05D004459 3.6e-196 690.6 1029 39.5
FAN28G2120 Fragaria x ananassa HOM05D003776 ORTHO05D004459 3.6e-196 690.6 1029 39.1
Sp4g09050 Schrenkiella parvula HOM05D003776 ORTHO05D004459 2.6e-194 684.5 1029 39.6
arahy.Tifrunner.gnm1.ann1.GK8SHH Arachis hypogaea HOM05D003776 ORTHO05D004459 5.8e-194 683.3 1033 38.7
Carub.0008s1091 Capsella rubella HOM05D003776 ORTHO05D004459 7.5e-194 682.9 1029 39.4
ClCG11G003010 Citrullus lanatus HOM05D003776 ORTHO05D004459 2.9e-193 681.0 1009 38.9
Haze_25580 Corylus avellana HOM05D003776 ORTHO05D004459 2.9e-193 681.0 1078 38.4
Thhalv10002339m.g Eutrema salsugineum HOM05D003776 ORTHO05D004459 1.9e-192 678.3 1029 39.7
PGR102G3028 Punica granatum HOM05D003776 ORTHO05D004459 5.4e-192 676.8 1030 39.3
FAN19G1245 Fragaria x ananassa HOM05D003776 ORTHO05D004459 7.0e-192 676.4 1041 38.2
Peaxi162Scf01211g00016 Petunia axillaris HOM05D003776 ORTHO05D004459 7.0e-192 676.4 1076 38.4
Ah.09g226230 Amaranthus hybridus HOM05D003776 ORTHO05D004459 3.5e-191 674.1 1062 37.3
Nitab4.5_0002658g0150 Nicotiana tabacum HOM05D003776 ORTHO05D004459 4.6e-191 673.7 1054 39.2
DCAR_017818 Daucus carota HOM05D003776 ORTHO05D004459 1.5e-189 668.7 1077 37.4
BraA07t29494Z Brassica rapa HOM05D003776 ORTHO05D004459 1.5e-186 658.7 1050 38.3
A07p17720 Brassica napus HOM05D003776 ORTHO05D004459 4.9e-185 653.7 1030 38.5
C07p25670 Brassica napus HOM05D003776 ORTHO05D004459 1.1e-184 652.5 1027 38.8
BolC7t43085H Brassica oleracea HOM05D003776 ORTHO05D004459 2.7e-183 647.9 1028 38.7
MELO3C004510.2 Cucumis melo HOM05D003776 ORTHO05D004459 3.5e-183 647.5 1009 37.4
Oeu055885.1 Olea europaea HOM05D003776 ORTHO05D004459 6.6e-182 643.3 1055 38.1
QL02p088328 Quercus lobata HOM05D003776 ORTHO05D004459 1.4e-179 635.6 864 41.6
Lj7C629G11 Lonicera japonica HOM05D003776 ORTHO05D004459 6.8e-179 633.3 1215 33.7
Aa31LG5G9110 Aethionema arabicum HOM05D003776 ORTHO05D004459 1.1e-173 615.9 1028 36.9
CBR_g37692 Chara braunii HOM05D003776 ORTHO05D004459 4.2e-168 597.4 1022 37.3
CiPaw.03G244000 Carya illinoinensis HOM05D003776 ORTHO05D004459 3.0e-166 591.3 798 41.7
Gohir.A07G035800 Gossypium hirsutum HOM05D003776 ORTHO05D004459 3.5e-159 567.8 729 42.1
Lalb_Chr08g0234831 Lupinus albus HOM05D003776 ORTHO05D004459 3.3e-157 561.2 850 38.6
VMungo1309G0107 Vigna mungo HOM05D003776 ORTHO05D004459 1.3e-156 559.3 1464 29.2
Zm00001eb235620 Zea mays HOM05D003776 ORTHO05D004459 3.8e-153 547.7 739 40.6
Ciclev10007244m.g Citrus clementina HOM05D003776 ORTHO05D004459 1.9e-144 518.8 589 45.3
Gohir.D07G039800 Gossypium hirsutum HOM05D003776 ORTHO05D004459 1.0e-142 513.1 589 44.8
CDE02G1439 Ceratophyllum demersum HOM05D003776 ORTHO05D004459 1.7e-137 495.7 794 38.7
Nitab4.5_0008846g0010 Nicotiana tabacum HOM05D003776 ORTHO05D004459 1.9e-136 492.3 581 46.1
unitig_26.g8982 Utricularia gibba HOM05D003776 ORTHO05D004459 4.1e-123 448.0 756 36.8
RcHm_v2.0_Chr2g0152361 Rosa chinensis HOM05D003776 ORTHO05D004459 2.0e-117 429.1 1006 31.4
HPP92_008649 Vanilla planifolia HOM05D003776 ORTHO05D004459 2.8e-116 425.2 727 36.3
RcHm_v2.0_Chr2g0152391 Rosa chinensis HOM05D003776 ORTHO05D004459 1.8e-110 406.0 1006 30.6
Actinidia26393 Actinidia chinensis HOM05D003776 ORTHO05D004459 1.5e-109 402.9 721 36.1
FvH4_6g38790 Fragaria vesca HOM05D003776 ORTHO05D004459 3.1e-107 395.2 1027 30.6
Os02g0202250 Oryza sativa ssp. japonica HOM05D003776 ORTHO05D004459 1.3e-81 310.1 403 42.7
CDE02G1576 Ceratophyllum demersum HOM05D003776 ORTHO05D004459 9.6e-56 224.2 251 45.8
Os02g0202300 Oryza sativa ssp. japonica HOM05D003776 ORTHO05D004459 2.4e-54 219.5 399 35.8
Hma1.2p1_0018F.1_g012440 Hydrangea macrophylla HOM05D003776 ORTHO05D004459 3.0e-49 202.6 200 50.0
Cpa.g.c32453 Carica papaya HOM05D003776 ORTHO05D004459 2.1e-42 179.9 313 36.4
HPP92_008667 Vanilla planifolia HOM05D003776 ORTHO05D004459 5.1e-41 175.3 290 37.2
Cpa.g.sc75.31 Carica papaya HOM05D003776 ORTHO05D004459 6.9e-38 164.9 149 53.0
SEGI_34338 Sequoiadendron giganteum HOM05D003776 ORTHO05D004459 2.6e-37 162.9 139 54.0
FAN19G2182 Fragaria x ananassa HOM05D003776 ORTHO05D004459 2.5e-35 156.4 202 38.1
Psat0s3979g0040 Pisum sativum HOM05D003776 ORTHO05D004459 2.5e-35 156.4 261 35.2
HanXRQChr12g0373951 Helianthus annuus HOM05D003776 ORTHO05D004459 1.3e-33 150.6 327 32.7
Duzib187G1323 Durio zibethinus HOM05D003776 ORTHO05D004459 5.1e-33 148.7 140 50.0
CiPaw.03G243900 Carya illinoinensis HOM05D003776 ORTHO05D004459 3.7e-31 142.5 224 38.8
HanXRQChr04g0119281 Helianthus annuus HOM05D003776 ORTHO05D004459 7.6e-29 134.8 324 31.2
SEGI_08250 Sequoiadendron giganteum HOM05D003776 ORTHO05D004459 1.8e-25 123.6 183 37.7
Cre13.g578100 Chlamydomonas reinhardtii HOM05D003776 ORTHO05D004459 3.9e-25 122.5 1197 21.6
Lalb_Chr08g0234811 Lupinus albus HOM05D003776 ORTHO05D004459 1.1e-24 120.9 96 56.2
Psat0s1308g0040 Pisum sativum HOM05D002636 ORTHO05D004459 6.9e-22 111.7 184 36.4
QL02p088302 Quercus lobata HOM05D003776 ORTHO05D004459 9.0e-22 111.3 172 38.4
Psat5g250280 Pisum sativum HOM05D003776 ORTHO05D004459 1.1e-19 104.4 132 43.9
MCO11G810 Micromonas commoda HOM05D003776 ORTHO05D004459 7.2e-19 101.7 433 21.9
SEGI_13925 Sequoiadendron giganteum HOM05D003776 ORTHO05D004459 5.1e-17 95.5 130 43.1
SHI03382 Sapria himalayana HOM05D003776 ORTHO05D004459 1.3e-15 90.9 198 33.8
Cpa.g.c42453 Carica papaya HOM05D003776 ORTHO05D004459 2.2e-15 90.1 68 54.4
ECA246G1679 Erigeron canadensis HOM05D003776 ORTHO05D004459 2.1e-10 73.6 129 32.6
vmacro22115 Vaccinium macrocarpon HOM05D004156 ORTHO05D005259 1.0e-09 71.2 146 34.9
Peaxi162Scf00574g00927 Petunia axillaris HOM05D003776 ORTHO05D004459 8.8e-09 68.2 302 24.8
Cpa.g.c37328 Carica papaya HOM05D003776 ORTHO05D004459 2.6e-08 66.6 75 42.7
RcHm_v2.0_Chr5g0007291 Rosa chinensis HOM05D003776 ORTHO05D004459 2.6e-08 66.6 133 35.3
PRCOL_00003394 Prasinoderma coloniale HOM05D003776 ORTHO05D004459 2.2e-07 63.5 141 31.2
CBR_g76107 Chara braunii HOM05D003776 ORTHO05D004459 1.4e-06 60.8 63 47.6
SEGI_27908 Sequoiadendron giganteum HOM05D003776 ORTHO05D004459 7.0e-06 58.5 43 58.1


User provided reference genes

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