Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c23_21600 Physcomitrium patens HOM05D001205 ORTHO05D001087 1.3e-69 266.2 125 100.0
Pp3c20_3500 Physcomitrium patens HOM05D001205 ORTHO05D001087 3.4e-17 92.0 65 75.4
CBR_g26147 Chara braunii HOM05D001205 ORTHO05D001087 1.6e-14 83.2 57 70.2
CBR_g46439 Chara braunii HOM05D001205 ORTHO05D001087 1.6e-14 83.2 57 70.2
Mapoly0029s0059 Marchantia polymorpha HOM05D001205 ORTHO05D001087 4.6e-14 81.6 57 71.9
arahy.Tifrunner.gnm1.ann1.NA7XEQ Arachis hypogaea HOM05D001205 ORTHO05D001087 5.1e-13 78.2 57 64.9
arahy.Tifrunner.gnm1.ann1.QF5NK4 Arachis hypogaea HOM05D001205 ORTHO05D001087 5.1e-13 78.2 57 64.9
SEGI_11183 Sequoiadendron giganteum HOM05D001205 ORTHO05D001087 5.1e-13 78.2 57 68.4
SMO358G0382 Selaginella moellendorffii HOM05D001205 ORTHO05D001087 2.5e-12 75.9 57 66.7
CANSAT25G0563 Cannabis sativa HOM05D001205 ORTHO05D001087 3.3e-12 75.5 57 63.2
Thhalv10022779m.g Eutrema salsugineum HOM05D001205 ORTHO05D001087 3.3e-12 75.5 54 68.5
Thhalv10025792m.g Eutrema salsugineum HOM05D001205 ORTHO05D001087 3.3e-12 75.5 55 67.3
CBR_g41302 Chara braunii HOM05D001205 ORTHO05D001087 4.3e-12 75.1 64 56.2
AT2G17640 Arabidopsis thaliana HOM05D001205 ORTHO05D001087 5.6e-12 74.7 54 68.5
QL06p052727 Quercus lobata HOM05D001205 ORTHO05D001087 5.6e-12 74.7 54 66.7
QL06p053842 Quercus lobata HOM05D001205 ORTHO05D001087 5.6e-12 74.7 54 66.7
AL3G50600 Arabidopsis lyrata HOM05D001205 ORTHO05D001087 7.3e-12 74.3 54 68.5
GSVIVG01003838001 Vitis vinifera HOM05D001205 ORTHO05D001087 7.3e-12 74.3 57 61.4
TWI53G0535 Tripterygium wilfordii HOM05D001205 ORTHO05D001087 9.5e-12 73.9 54 63.0
MD02G1119600 Malus domestica HOM05D001205 ORTHO05D001087 1.2e-11 73.6 54 66.7
Sp3g30970 Schrenkiella parvula HOM05D001205 ORTHO05D001087 1.2e-11 73.6 54 68.5
BcaC01g02902 Brassica carinata HOM05D001205 ORTHO05D001087 1.6e-11 73.2 54 66.7
A06p33740 Brassica napus HOM05D001205 ORTHO05D001087 1.6e-11 73.2 54 66.7
C03p58570 Brassica napus HOM05D001205 ORTHO05D001087 1.6e-11 73.2 54 66.7
BolC3t18118H Brassica oleracea HOM05D001205 ORTHO05D001087 1.6e-11 73.2 54 66.7
BraA06t26309Z Brassica rapa HOM05D001205 ORTHO05D001087 1.6e-11 73.2 54 66.7
Haze_03676 Corylus avellana HOM05D001205 ORTHO05D001087 1.6e-11 73.2 54 64.8
arahy.Tifrunner.gnm1.ann1.VS0KPV Arachis hypogaea HOM05D001205 ORTHO05D001087 2.1e-11 72.8 58 60.3
MCO05G462 Micromonas commoda HOM05D001205 ORTHO05D001087 2.1e-11 72.8 57 63.2
Cpa.g.sc55.185 Carica papaya HOM05D001205 ORTHO05D001087 2.8e-11 72.4 54 63.0
Aqoxy6G01700 Aquilegia oxysepala HOM05D001205 ORTHO05D001087 3.6e-11 72.0 57 61.4
Glyma.16G118800 Glycine max HOM05D001205 ORTHO05D001087 3.6e-11 72.0 57 61.4
THA.LOC104807433 Tarenaya hassleriana HOM05D001205 ORTHO05D001087 3.6e-11 72.0 54 63.0
AT4G35640 Arabidopsis thaliana HOM05D001205 ORTHO05D001087 4.7e-11 71.6 54 64.8
CSS0013877 Camellia sinensis var. sinensis HOM05D001205 ORTHO05D001087 4.7e-11 71.6 57 59.6
VMungo0251G1201 Vigna mungo HOM05D001205 ORTHO05D001087 4.7e-11 71.6 57 59.6
Aa31LG8G14910 Aethionema arabicum HOM05D001205 ORTHO05D001087 6.2e-11 71.2 54 64.8
Carub.0007s0466 Capsella rubella HOM05D001205 ORTHO05D001087 6.2e-11 71.2 54 63.0
Cre17.g713850 Chlamydomonas reinhardtii HOM05D001205 ORTHO05D001087 6.2e-11 71.2 57 57.9
MD02G1119500 Malus domestica HOM05D001205 ORTHO05D001087 6.2e-11 71.2 53 66.0
CsaV3_6G047800 Cucumis sativus L. HOM05D001205 ORTHO05D001087 8.1e-11 70.9 54 63.0
Duzib147G1388 Durio zibethinus HOM05D001205 ORTHO05D001087 8.1e-11 70.9 54 61.1
Lsat_1_v5_gn_2_74441 Lactuca sativa HOM05D001205 ORTHO05D001087 8.1e-11 70.9 57 57.9
arahy.Tifrunner.gnm1.ann1.NTH9NT Arachis hypogaea HOM05D001205 ORTHO05D001087 1.1e-10 70.5 57 59.6
AL7G15500 Arabidopsis lyrata HOM05D001205 ORTHO05D001087 1.4e-10 70.1 53 66.0
CARHR243970 Cardamine hirsuta HOM05D001205 ORTHO05D001087 1.4e-10 70.1 54 63.0
Lalb_Chr05g0211931 Lupinus albus HOM05D001205 ORTHO05D001087 1.4e-10 70.1 54 61.1
MD15G1233400 Malus domestica HOM05D001205 ORTHO05D001087 1.4e-10 70.1 54 61.1
Thecc.01G007200 Theobroma cacao HOM05D001205 ORTHO05D001087 1.8e-10 69.7 54 61.1
MELO3C007969.2 Cucumis melo HOM05D001205 ORTHO05D001087 2.3e-10 69.3 54 61.1
C09p61610 Brassica napus HOM05D001205 ORTHO05D001087 5.2e-10 68.2 55 61.8
BolC9t58999H Brassica oleracea HOM05D001205 ORTHO05D001087 5.2e-10 68.2 55 61.8
CAN.G553.20 Capsicum annuum HOM05D001205 ORTHO05D001087 5.2e-10 68.2 54 61.1
Glyma.02G042000 Glycine max HOM05D001205 ORTHO05D001087 5.2e-10 68.2 57 59.6
COL.COLO4_22536 Corchorus olitorius HOM05D001205 ORTHO05D001087 6.8e-10 67.8 54 59.3
Gohir.A02G177000 Gossypium hirsutum HOM05D001205 ORTHO05D001087 6.8e-10 67.8 54 57.4
Gorai.003G003100 Gossypium raimondii HOM05D001205 ORTHO05D001087 6.8e-10 67.8 54 57.4
Sp7g33410 Schrenkiella parvula HOM05D001205 ORTHO05D001087 6.8e-10 67.8 61 59.0
TWI73G0347 Tripterygium wilfordii HOM05D001205 ORTHO05D001087 1.5e-09 66.6 54 59.3
MBI19_g45745_MAGBIO Magnolia biondii HOM05D001205 ORTHO05D001087 2.0e-09 66.2 55 58.2
Gohir.D03G002900 Gossypium hirsutum HOM05D001205 ORTHO05D001087 3.4e-09 65.5 52 59.6
Phvul.003G269000 Phaseolus vulgaris HOM05D001205 ORTHO05D001087 3.4e-09 65.5 57 52.6
PSO675G0721 Papaver somniferum HOM05D001205 ORTHO05D001087 7.5e-09 64.3 53 58.5
arahy.Tifrunner.gnm1.ann1.82Q4AG Arachis hypogaea HOM05D001205 ORTHO05D000035 9.9e-09 63.9 55 52.7
Haze_27653 Corylus avellana HOM05D001205 ORTHO05D001087 1.3e-08 63.5 57 54.4
PRCOL_00002113 Prasinoderma coloniale HOM05D001205 ORTHO05D001087 1.3e-08 63.5 55 58.2
HPP92_020398 Vanilla planifolia HOM05D001205 ORTHO05D001087 1.3e-08 63.5 55 58.2
Thhalv10012384m.g Eutrema salsugineum HOM05D001205 ORTHO05D001087 1.7e-08 63.2 52 57.7
LjContig00081g0010826 Lotus japonicus HOM05D001205 ORTHO05D001087 1.7e-08 63.2 55 54.5
AL1G64070 Arabidopsis lyrata HOM05D001205 ORTHO05D001087 2.2e-08 62.8 52 55.8
Carub.0001s4430 Capsella rubella HOM05D001205 ORTHO05D001087 2.2e-08 62.8 52 55.8
Carub.0001s4452 Capsella rubella HOM05D001205 ORTHO05D001087 2.2e-08 62.8 52 55.8
CiPaw.11G202100 Carya illinoinensis HOM05D001205 ORTHO05D001087 2.9e-08 62.4 55 56.4
FAN16G1863 Fragaria x ananassa HOM05D001205 ORTHO05D001087 2.9e-08 62.4 53 60.4
PSO541G0062 Papaver somniferum HOM05D001205 ORTHO05D001087 2.9e-08 62.4 56 53.6
Pp3c24_14040 Physcomitrium patens HOM05D001205 ORTHO05D001087 3.7e-08 62.0 57 54.4
SEGI_03940 Sequoiadendron giganteum HOM05D001205 ORTHO05D001087 3.7e-08 62.0 55 54.5
AagrBONN_evm.TU.Sc2ySwM_344.5574 Anthoceros agrestis HOM05D001205 ORTHO05D001087 4.9e-08 61.6 57 54.4
FvH4_3g29510 Fragaria vesca HOM05D001205 ORTHO05D001087 4.9e-08 61.6 56 55.4
FAN11G1246 Fragaria x ananassa HOM05D001205 ORTHO05D001087 4.9e-08 61.6 56 55.4
Pp3c8_18470 Physcomitrium patens HOM05D001205 ORTHO05D001087 4.9e-08 61.6 57 54.4
CDE04G2926 Ceratophyllum demersum HOM05D001205 ORTHO05D001087 6.4e-08 61.2 57 52.6
FAN21G1318 Fragaria x ananassa HOM05D001205 ORTHO05D001087 6.4e-08 61.2 56 55.4
RcHm_v2.0_Chr5g0054471 Rosa chinensis HOM05D001205 ORTHO05D001087 6.4e-08 61.2 56 55.4
BcaC08g44228 Brassica carinata HOM05D001205 ORTHO05D001087 1.1e-07 60.5 52 55.8
C06p16300 Brassica napus HOM05D001205 ORTHO05D001087 1.1e-07 60.5 52 55.8
BolC6t36830H Brassica oleracea HOM05D001205 ORTHO05D001087 1.1e-07 60.5 52 55.8
Mapoly0010s0095 Marchantia polymorpha HOM05D001205 ORTHO05D001087 1.1e-07 60.5 61 49.2
PSO063G0739 Papaver somniferum HOM05D001205 ORTHO05D001087 1.1e-07 60.5 56 51.8
PSO832G0250 Papaver somniferum HOM05D001205 ORTHO05D001087 1.1e-07 60.5 56 51.8
CAN.G1055.2 Capsicum annuum HOM05D001205 ORTHO05D001087 1.4e-07 60.1 59 52.5
HanXRQChr14g0442381 Helianthus annuus HOM05D001205 ORTHO05D001087 1.9e-07 59.7 57 50.9
arahy.Tifrunner.gnm1.ann1.B3L4BD Arachis hypogaea HOM05D001205 ORTHO05D001087 2.4e-07 59.3 55 52.7
arahy.Tifrunner.gnm1.ann1.K4CMZR Arachis hypogaea HOM05D001205 ORTHO05D001087 2.4e-07 59.3 55 52.7
Rhsim10G0198900 Rhododendron simsii HOM05D001205 ORTHO05D001087 3.2e-07 58.9 55 56.4
CiPaw.07G004200 Carya illinoinensis HOM05D001205 ORTHO05D001087 4.1e-07 58.5 54 53.7
FAN19G1834 Fragaria x ananassa HOM05D001205 ORTHO05D001087 4.1e-07 58.5 58 55.2
Zm00001eb002740 Zea mays HOM05D001205 ORTHO05D001087 4.1e-07 58.5 57 54.4
PGR102G2788 Punica granatum HOM05D001205 ORTHO05D001087 5.4e-07 58.2 57 49.1
MSTRG.16042 Avicennia marina HOM05D001205 ORTHO05D001087 7.1e-07 57.8 53 54.7
MSTRG.6989 Avicennia marina HOM05D001205 ORTHO05D001087 7.1e-07 57.8 56 51.8
RcHm_v2.0_Chr2g0097471 Rosa chinensis HOM05D001205 ORTHO05D001087 7.1e-07 57.8 57 54.4
RcHm_v2.0_Chr2g0097591 Rosa chinensis HOM05D001205 ORTHO05D001087 7.1e-07 57.8 57 54.4
CBR_g32072 Chara braunii HOM05D001205 ORTHO05D001087 9.2e-07 57.4 59 45.8
Migut.M01431 Erythranthe guttata HOM05D001205 ORTHO05D001087 9.2e-07 57.4 55 50.9
Aa31LG8G320 Aethionema arabicum HOM05D001205 ORTHO05D001087 1.2e-06 57.0 55 50.9
AL3G24850 Arabidopsis lyrata HOM05D001205 ORTHO05D001087 1.2e-06 57.0 55 50.9
AT3G13110 Arabidopsis thaliana HOM05D001205 ORTHO05D001087 1.2e-06 57.0 55 50.9
BcaB06g25487 Brassica carinata HOM05D001205 ORTHO05D001087 1.2e-06 57.0 55 50.9
BcaC05g29211 Brassica carinata HOM05D001205 ORTHO05D001087 1.2e-06 57.0 55 50.9
A05p36430 Brassica napus HOM05D000121 ORTHO05D000102 1.2e-06 57.0 55 50.9
C05p54840 Brassica napus HOM05D000121 ORTHO05D000102 1.2e-06 57.0 55 50.9
BolC5t34155H Brassica oleracea HOM05D000121 ORTHO05D000102 1.2e-06 57.0 55 50.9
BraA05t22443Z Brassica rapa HOM05D000121 ORTHO05D000102 1.2e-06 57.0 55 50.9
CARHR087700 Cardamine hirsuta HOM05D001205 ORTHO05D001087 1.2e-06 57.0 55 50.9
Thhalv10020893m.g Eutrema salsugineum HOM05D001205 ORTHO05D001087 1.2e-06 57.0 55 50.9
FvH4_1g10540 Fragaria vesca HOM05D001205 ORTHO05D001087 1.2e-06 57.0 57 54.4
Sabra05G0082400 Salix brachista HOM05D001205 ORTHO05D001087 1.2e-06 57.0 56 51.8
Sp3g11280 Schrenkiella parvula HOM05D001205 ORTHO05D001087 1.2e-06 57.0 55 50.9
CAN.G1005.9 Capsicum annuum HOM05D000365 ORTHO05D001087 1.6e-06 56.6 57 50.9
Eucgr.F03698 Eucalyptus grandis HOM05D001205 ORTHO05D001087 1.6e-06 56.6 58 50.0
Prupe.4G239400 Prunus persica HOM05D001205 ORTHO05D001087 1.6e-06 56.6 55 50.9
Nitab4.5_0006756g0030 Nicotiana tabacum HOM05D001205 ORTHO05D001087 2.1e-06 56.2 56 48.2
Atru.chr1.2329 Acer truncatum HOM05D001205 ORTHO05D001087 2.7e-06 55.8 55 49.1
CAN.G890.75 Capsicum annuum HOM05D001205 ORTHO05D001087 2.7e-06 55.8 57 49.1
FAN23G3039 Fragaria x ananassa HOM05D001205 ORTHO05D001087 2.7e-06 55.8 54 55.6
FAN26G3274 Fragaria x ananassa HOM05D001205 ORTHO05D001087 2.7e-06 55.8 54 55.6
FAN28G1918 Fragaria x ananassa HOM05D001205 ORTHO05D001087 2.7e-06 55.8 54 55.6
Lalb_Chr10g0100221 Lupinus albus HOM05D001205 ORTHO05D001087 2.7e-06 55.8 55 50.9
Lalb_Chr17g0342301 Lupinus albus HOM05D001205 ORTHO05D001087 2.7e-06 55.8 55 50.9
Lalb_Chr17g0348881 Lupinus albus HOM05D001205 ORTHO05D001087 2.7e-06 55.8 55 49.1
vmacro20523 Vaccinium macrocarpon HOM05D001205 ORTHO05D001087 2.7e-06 55.8 57 49.1
Hund03616 Selenicereus undatus HOM05D001205 ORTHO05D001087 3.5e-06 55.5 57 49.1
SGA_v2.0_scaffold168G38538 Striga asiatica HOM05D001205 ORTHO05D001087 3.5e-06 55.5 56 48.2
C03p93350 Brassica napus HOM05D001205 ORTHO05D001087 4.6e-06 55.1 54 50.0
BolC3t21633H Brassica oleracea HOM05D001205 ORTHO05D001087 4.6e-06 55.1 54 50.0
CARHR045640 Cardamine hirsuta HOM05D001205 ORTHO05D001087 4.6e-06 55.1 52 51.9
ECA238G2872 Erigeron canadensis HOM05D001205 ORTHO05D001087 4.6e-06 55.1 57 45.6
PRCOL_00000029 Prasinoderma coloniale HOM05D001205 ORTHO05D001087 4.6e-06 55.1 57 49.1
Sed0019186 Sechium edule HOM05D001205 ORTHO05D001087 4.6e-06 55.1 54 51.9
HPP92_024891 Vanilla planifolia HOM05D001205 ORTHO05D001087 4.6e-06 55.1 55 49.1
Aa31LG10G240 Aethionema arabicum HOM05D001205 ORTHO05D001087 6.0e-06 54.7 56 50.0
SMO134G0076 Selaginella moellendorffii HOM05D001205 ORTHO05D001087 6.0e-06 54.7 64 45.3
arahy.Tifrunner.gnm1.ann1.AM8NHJ Arachis hypogaea HOM05D001205 ORTHO05D001087 7.8e-06 54.3 56 46.4
Nitab4.5_0000702g0070 Nicotiana tabacum HOM05D001205 ORTHO05D001087 7.8e-06 54.3 57 49.1
Nitab4.5_0002967g0050 Nicotiana tabacum HOM05D001205 ORTHO05D001087 7.8e-06 54.3 57 49.1
Nitab4.5_0028970g0010 Nicotiana tabacum HOM05D001205 ORTHO05D001087 7.8e-06 54.3 57 49.1
Rhsim08G0232100 Rhododendron simsii HOM05D001205 ORTHO05D001087 7.8e-06 54.3 55 52.7
Solyc02g082850.3 Solanum lycopersicum HOM05D001205 ORTHO05D001087 7.8e-06 54.3 57 49.1
Sopen02g027650 Solanum pennellii HOM05D001205 ORTHO05D001087 7.8e-06 54.3 57 49.1


User provided reference genes

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