Notice (8): Undefined variable: source_groups_information [APP/View/Tools/similarity_heatmap.ctp, line 77]Code Context <label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?> $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001205', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '518', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A03p13200' => 'bna', 'A05p17220' => 'bna', 'A06p33740' => 'bna', 'A08p00160' => 'bna', 'A10p14100' => 'bna', 'Aa31LG10G240' => 'aar', 'Aa31LG3G12710' => 'aar', 'Aa31LG6G12600' => 'aar', 'Aa31LG8G14910' => 'aar', 'Aa31LG8G320' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3598' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2981' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5574' => 'aag', 'Actinidia05020' => 'ach', 'Actinidia05025' => 'ach', 'Actinidia17385' => 'ach', 'Actinidia21748' => 'ach', 'Ah.04g163990' => 'amhyb', 'Ah.06g181220' => 'amhyb', 'AL1G64070' => 'aly', 'AL3G24850' => 'aly', 'AL3G50600' => 'aly', 'AL7G15500' => 'aly', 'AL8G32600' => 'aly', 'Aqoxy2G02475' => 'aox', 'Aqoxy4G02246' => 'aox', 'Aqoxy6G01700' => 'aox', 'Aqoxy7G01252' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2DX304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82Q4AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97A83C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98EFWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AM8NHJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3L4BD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0DJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4CMZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA7XEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NTH9NT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAFX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN33QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF5NK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VS0KPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMD1K9' => 'arhy', 'AT1G55920' => 'ath', 'AT2G17640' => 'ath', 'AT3G13110' => 'ath', 'AT4G35640' => 'ath', 'AT5G56760' => 'ath', 'ATR0624G017' => 'atr', 'ATR0652G003' => 'atr', 'ATR0661G415' => 'atr', 'Atru.chr1.2329' => 'acertr', 'Atru.chr11.1489' => 'acertr', 'Atru.chr2.3663' => 'acertr', 'Atru.chr3.955' => 'acertr', 'Atru.chr3.966' => 'acertr', 'AUR62033777' => 'cqu', 'AUR62040649' => 'cqu', 'BcaB01g02639' => 'bca', 'BcaB01g04419' => 'bca', 'BcaB02g10790' => 'bca', 'BcaB03g12419' => 'bca', 'BcaB04g16927' => 'bca', 'BcaB06g25487' => 'bca', 'BcaB06g28992' => 'bca', 'BcaB07g33180' => 'bca', 'BcaB08g36060' => 'bca', 'BcaC01g02902' => 'bca', 'BcaC01g06446' => 'bca', 'BcaC02g11492' => 'bca', 'BcaC04g20055' => 'bca', 'BcaC05g29211' => 'bca', 'BcaC07g40590' => 'bca', 'BcaC08g43662' => 'bca', 'BcaC08g43664' => 'bca', 'BcaC08g44228' => 'bca', 'BolC3t13985H' => 'bol', 'BolC3t18118H' => 'bol', 'BolC3t21633H' => 'bol', 'BolC4t23052H' => 'bol', 'BolC6t36167H' => 'bol', 'BolC6t36830H' => 'bol', 'BolC9t57683H' => 'bol', 'BolC9t58999H' => 'bol', 'BraA03t10632Z' => 'bra', 'BraA05t20622Z' => 'bra', 'BraA06t26309Z' => 'bra', 'BraA08t32072Z' => 'bra', 'BraA10t43501Z' => 'bra', 'BraSC56t46392Z' => 'bra', 'C03p15470' => 'bna', 'C03p58570' => 'bna', 'C03p93350' => 'bna', 'C04p14780' => 'bna', 'C06p16300' => 'bna', 'C08p42160' => 'bna', 'C09p48330' => 'bna', 'C09p61610' => 'bna', 'CAN.G1055.2' => 'can', 'CAN.G123.3' => 'can', 'CAN.G1241.17' => 'can', 'CAN.G337.20' => 'can', 'CAN.G469.4' => 'can', 'CAN.G492.30' => 'can', 'CAN.G553.20' => 'can', 'CAN.G626.20' => 'can', 'CAN.G890.75' => 'can', 'CANSAT11G1841' => 'cansat', 'CANSAT25G0563' => 'cansat', 'CANSAT56G1177' => 'cansat', 'CANSAT56G1842' => 'cansat', 'CANSAT56G4457' => 'cansat', 'CARHR045640' => 'chi', 'CARHR087700' => 'chi', 'CARHR107840' => 'chi', 'CARHR243970' => 'chi', 'CARHR270510' => 'chi', 'Carub.0001s4430' => 'cru', 'Carub.0001s4452' => 'cru', 'Carub.0003s1245' => 'cru', 'Carub.0003s3172' => 'cru', 'Carub.0007s0466' => 'cru', 'Carub.0008s1724' => 'cru', 'Ca_06385_v3' => 'car', 'Ca_20178_v3' => 'car', 'Ca_23588_v3' => 'car', 'Ca_24962_v3' => 'car', 'Ca_29966_v3' => 'car', 'CBR_g22982' => 'cbr', 'CBR_g26147' => 'cbr', 'CBR_g32072' => 'cbr', 'CBR_g41302' => 'cbr', 'CBR_g46439' => 'cbr', 'Cc04_g02110' => 'ccan', 'Cc05_g14780' => 'ccan', 'Cc06_g11160' => 'ccan', 'Cc07_g11640' => 'ccan', 'CDE04G1452' => 'cde', 'CDE04G2926' => 'cde', 'CDE05G0521' => 'cde', 'CDE05G0623' => 'cde', 'CDE05G0661' => 'cde', 'CDE07G1605' => 'cde', 'Cfa000059' => 'cfa', 'Cfa003100' => 'cfa', 'Cfa020216' => 'cfa', 'Cfa020217' => 'cfa', 'Ciclev10008523m.g' => 'ccl', 'Ciclev10009063m.g' => 'ccl', 'CiPaw.03G218100' => 'cil', 'CiPaw.07G004200' => 'cil', 'CiPaw.09G106600' => 'cil', 'CiPaw.11G202100' => 'cil', 'ClCG01G020830' => 'cla', 'ClCG09G021050' => 'cla', 'COL.COLO4_02647' => 'col', 'COL.COLO4_09804' => 'col', 'COL.COLO4_18223' => 'col', 'COL.COLO4_18224' => 'col', 'COL.COLO4_22536' => 'col', 'Cpa.g.sc12.177' => 'cpa', 'Cpa.g.sc27.251' => 'cpa', 'Cpa.g.sc55.185' => 'cpa', 'Cre10.g466750' => 'cre', 'Cre17.g713850' => 'cre', 'CsaV3_2G017890' => 'csa', 'CsaV3_6G047800' => 'csa', 'CsaV3_7G018620' => 'csa', 'CSS0003072' => 'camsi', 'CSS0009537' => 'camsi', 'CSS0009950' => 'camsi', 'CSS0013877' => 'camsi', 'CSS0023998' => 'camsi', 'CSS0026018' => 'camsi', 'CSS0026852' => 'camsi', 'CSS0029099' => 'camsi', 'CSS0043861' => 'camsi', 'CSS0044287' => 'camsi', 'CSS0044826' => 'camsi', 'DCAR_013222' => 'dca', 'DCAR_017087' => 'dca', 'DCAR_032248' => 'dca', 'Dinv04406' => 'din', 'Dinv04557' => 'din', 'Dinv30392' => 'din', 'Dinv36749' => 'din', 'Dinv40172' => 'din', 'Dinv42298' => 'din', 'Duzib147G1388' => 'dzi', 'Duzib168G0024' => 'dzi', 'Duzib213G0174' => 'dzi', 'ECA232G3761' => 'eca', 'ECA234G2581' => 'eca', 'ECA236G0418' => 'eca', 'ECA238G2872' => 'eca', 'ECA240G3456' => 'eca', 'ECA246G3133' => 'eca', 'EL10Ac4g07608' => 'bvu', 'EL10Ac4g08421' => 'bvu', 'EL10Ac4g08422' => 'bvu', 'Eucgr.C00914' => 'egr', 'Eucgr.F03698' => 'egr', 'Eucgr.J02527' => 'egr', 'FAN11G1246' => 'fan', 'FAN16G1863' => 'fan', 'FAN19G0124' => 'fan', 'FAN19G1834' => 'fan', 'FAN21G1318' => 'fan', 'FAN23G3039' => 'fan', 'FAN26G1224' => 'fan', 'FAN26G2695' => 'fan', 'FAN26G3274' => 'fan', 'FAN28G0616' => 'fan', 'FAN28G1918' => 'fan', 'FvH4_1g07140' => 'fve', 'FvH4_1g10540' => 'fve', 'FvH4_3g29510' => 'fve', 'Glyma.01G160000' => 'gma', 'Glyma.02G042000' => 'gma', 'Glyma.02G299100' => 'gma', 'Glyma.07G058800' => 'gma', 'Glyma.08G327400' => 'gma', 'Glyma.11G084100' => 'gma', 'Glyma.14G014700' => 'gma', 'Glyma.16G027700' => 'gma', 'Glyma.16G118800' => 'gma', 'Glyma.18G080000' => 'gma', 'Gohir.A01G089900' => 'ghi', 'Gohir.A02G177000' => 'ghi', 'Gohir.A13G134101' => 'ghi', 'Gohir.A13G193700' => 'ghi', 'Gohir.D01G075200' => 'ghi', 'Gohir.D03G002900' => 'ghi', 'Gohir.D13G137600' => 'ghi', 'Gohir.D13G199500' => 'ghi', 'Gorai.002G098400' => 'gra', 'Gorai.003G003100' => 'gra', 'Gorai.013G154200' => 'gra', 'Gorai.013G228200' => 'gra', 'GSVIVG01003478001' => 'vvi', 'GSVIVG01003838001' => 'vvi', 'GSVIVG01014639001' => 'vvi', 'GSVIVG01015228001' => 'vvi', 'HanXRQChr03g0077731' => 'han', 'HanXRQChr04g0112571' => 'han', 'HanXRQChr04g0119361' => 'han', 'HanXRQChr05g0149311' => 'han', 'HanXRQChr09g0276371' => 'han', 'HanXRQChr11g0324721' => 'han', 'HanXRQChr11g0333431' => 'han', 'HanXRQChr12g0354721' => 'han', 'HanXRQChr14g0431241' => 'han', 'HanXRQChr14g0442381' => 'han', 'Haze_03676' => 'cav', 'Haze_06992' => 'cav', 'Haze_09801' => 'cav', 'Haze_09802' => 'cav', 'Haze_25900' => 'cav', 'Haze_27653' => 'cav', 'Hma1.2p1_0036F.1_g022660' => 'hma', 'Hma1.2p1_0388F.1_g142210' => 'hma', 'Hma1.2p1_0657F.1_g196890' => 'hma', 'Hma1.2p1_0663F.1_g198760' => 'hma', 'Hma1.2p1_0663F.1_g198900' => 'hma', 'Hma1.2p1_0800F.1_g219950' => 'hma', 'Hma1.2p1_0800F.1_g219960' => 'hma', 'Hma1.2p1_2491F.1_g323230' => 'hma', 'HPP92_005550' => 'vpl', 'HPP92_020398' => 'vpl', 'HPP92_022693' => 'vpl', 'HPP92_022695' => 'vpl', 'HPP92_024891' => 'vpl', 'Hund03616' => 'sun', 'Hund10417' => 'sun', 'Lalb_Chr05g0211931' => 'lal', 'Lalb_Chr10g0100221' => 'lal', 'Lalb_Chr10g0107381' => 'lal', 'Lalb_Chr15g0081981' => 'lal', 'Lalb_Chr17g0342301' => 'lal', 'Lalb_Chr17g0348881' => 'lal', 'Lalb_Chr20g0113991' => 'lal', 'Lj1C888T3' => 'lonja', 'Lj1C888T4' => 'lonja', 'Lj2g0003640' => 'lja', 'Lj2P259T13' => 'lonja', 'Lj3g0022427' => 'lja', 'Lj4A232T48' => 'lonja', 'Lj4C309G3' => 'lonja', 'Lj5A47T39' => 'lonja', 'Lj6g0007553' => 'lja', 'Lj8P177T19' => 'lonja', 'LjContig00081g0010826' => 'lja', 'Lsat_1_v5_gn_2_74441' => 'lsa', 'Lsat_1_v5_gn_4_95580' => 'lsa', 'Lsat_1_v5_gn_5_145700' => 'lsa', 'Lsat_1_v5_gn_7_113221' => 'lsa', 'Lsat_1_v5_gn_9_21861' => 'lsa', 'Lsat_1_v5_gn_9_90540' => 'lsa', 'Manes.02G112600' => 'mes', 'Manes.03G031800' => 'mes', 'Manes.03G139860' => 'mes', 'Manes.15G062000' => 'mes', 'Mapoly0010s0095' => 'mpo', 'Mapoly0029s0059' => 'mpo', 'Mapoly0076s0098' => 'mpo', 'MBI08_g24262_MAGBIO' => 'mbi', 'MBI08_g24263_MAGBIO' => 'mbi', 'MBI19_g42006_MAGBIO' => 'mbi', 'MBI19_g44081_MAGBIO' => 'mbi', 'MBI19_g45745_MAGBIO' => 'mbi', 'MCO02G080' => 'mco', 'MCO05G462' => 'mco', 'MCO15G451' => 'mco', 'MD02G1075400' => 'mdo', 'MD02G1075800' => 'mdo', 'MD02G1119500' => 'mdo', 'MD02G1119600' => 'mdo', 'MD02G1238300' => 'mdo', 'MD03G1187100' => 'mdo', 'MD11G1202100' => 'mdo', 'MD15G1233400' => 'mdo', 'Medtr3g058410' => 'mtr', 'Medtr5g023760' => 'mtr', 'Medtr5g095470' => 'mtr', 'Medtr8g028040' => 'mtr', 'MELO3C003551.2' => 'cme', 'MELO3C007969.2' => 'cme', 'MELO3C023285.2' => 'cme', 'MELO3C024900.2' => 'cme', 'Migut.H01771' => 'egut', 'Migut.J00592' => 'egut', 'Migut.K00586' => 'egut', 'Migut.M01431' => 'egut', 'Migut.M01667' => 'egut', 'MSTRG.10574' => 'ama', 'MSTRG.13014' => 'ama', 'MSTRG.15786' => 'ama', 'MSTRG.16042' => 'ama', 'MSTRG.19528' => 'ama', 'MSTRG.6989' => 'ama', 'Nitab4.5_0000461g0140' => 'nta', 'Nitab4.5_0000540g0230' => 'nta', 'Nitab4.5_0000702g0070' => 'nta', 'Nitab4.5_0002967g0050' => 'nta', 'Nitab4.5_0003491g0050' => 'nta', 'Nitab4.5_0006756g0030' => 'nta', 'Nitab4.5_0009088g0010' => 'nta', 'Nitab4.5_0010958g0010' => 'nta', 'Nitab4.5_0028970g0010' => 'nta', 'Nn1g03217' => 'nnu', 'Nn5g30958' => 'nnu', 'Nn6g35428' => 'nnu', 'Oeu002772.1' => 'oeu', 'Oeu034557.1' => 'oeu', 'Oeu037597.1' => 'oeu', 'Oeu041430.1' => 'oeu', 'Oeu044497.1' => 'oeu', 'Oeu049350.2' => 'oeu', 'Oeu057088.1' => 'oeu', 'Os03g0133900' => 'osa', 'Os03g0185000' => 'osa', 'Os03g0196600' => 'osa', 'Os05g0533500' => 'osa', 'Peaxi162Scf00079g00143' => 'pax', 'Peaxi162Scf00285g00073' => 'pax', 'Peaxi162Scf00498g00131' => 'pax', 'Peaxi162Scf00515g00045' => 'pax', 'Peaxi162Scf01183g00139' => 'pax', 'PGR031G1944' => 'pgr', 'PGR083G1606' => 'pgr', 'PGR102G2788' => 'pgr', 'PGR142G2479' => 'pgr', 'PGSC0003DMG400000282' => 'stu', 'PGSC0003DMG400001573' => 'stu', 'PGSC0003DMG400014379' => 'stu', 'PGSC0003DMG400022181' => 'stu', 'Phvul.001G170600' => 'pvu', 'Phvul.002G114700' => 'pvu', 'Phvul.003G269000' => 'pvu', 'Phvul.006G055200' => 'pvu', 'Phvul.008G277800' => 'pvu', 'Phvul.010G110600' => 'pvu', 'Potri.001G365500' => 'ptr', 'Potri.005G099700' => 'ptr', 'Potri.011G068001' => 'ptr', 'Potri.013G109500' => 'ptr', 'Potri.015G147000' => 'ptr', 'Pp3c20_3500' => 'ppa', 'Pp3c23_17150' => 'ppa', 'Pp3c23_21600' => 'ppa', 'Pp3c24_14040' => 'ppa', 'Pp3c8_18470' => 'ppa', 'PRCOL_00000029' => 'pco', 'PRCOL_00002113' => 'pco', 'PRCOL_00002366' => 'pco', 'Prupe.4G239400' => 'ppe', 'Prupe.4G239500' => 'ppe', 'Prupe.7G179500' => 'ppe', 'Prupe.7G212700' => 'ppe', 'Psat2g008240' => 'psa', 'Psat2g008280' => 'psa', 'Psat2g008320' => 'psa', 'Psat2g129920' => 'psa', 'Psat4g158520' => 'psa', 'Psat5g173800' => 'psa', 'Psat7g256840' => 'psa', 'PSO063G0739' => 'pso', 'PSO063G2203' => 'pso', 'PSO063G5440' => 'pso', 'PSO170G5797' => 'pso', 'PSO541G0062' => 'pso', 'PSO541G3229' => 'pso', 'PSO675G0721' => 'pso', 'PSO675G9329' => 'pso', 'PSO832G0250' => 'pso', 'PSO832G2046' => 'pso', 'PSO832G4406' => 'pso', 'QL02p063027' => 'qlo', 'QL05p068287' => 'qlo', 'QL05p068781' => 'qlo', 'QL06p052727' => 'qlo', 'QL06p053842' => 'qlo', 'QL08p004961' => 'qlo', 'RcHm_v2.0_Chr2g0093021' => 'rch', 'RcHm_v2.0_Chr2g0097471' => 'rch', 'RcHm_v2.0_Chr2g0097591' => 'rch', 'RcHm_v2.0_Chr5g0054471' => 'rch', 'Rhsim04G0014100' => 'rsi', 'Rhsim08G0232100' => 'rsi', 'Rhsim10G0198900' => 'rsi', 'Rhsim13G0142600' => 'rsi', 'Sabra05G0082400' => 'sbr', 'Sabra13G0094400' => 'sbr', 'Sabra15G0156000' => 'sbr', 'Sabra16G0239100' => 'sbr', 'SalBow6G3897' => 'sbo', 'SalBow8G0744' => 'sbo', 'SalBow8G0917' => 'sbo', 'Sc03g0011120' => 'sci', 'Sc07g0001310' => 'sci', 'Sc16g0007950' => 'sci', 'Sed0000282' => 'sed', 'Sed0002951' => 'sed', 'Sed0005975' => 'sed', 'Sed0015535' => 'sed', 'Sed0019186' => 'sed', 'SEGI_03940' => 'sgi', 'SEGI_11183' => 'sgi', 'SEGI_27318' => 'sgi', 'SEGI_39826' => 'sgi', 'SGA_v2.0_scaffold168G38538' => 'sas', 'SGA_v2.0_scaffold62G21593' => 'sas', 'SGA_v2.0_scaffold630G53289' => 'sas', 'SGA_v2.0_scaffold8G04394' => 'sas', 'SHI24909' => 'shi', 'SMO134G0076' => 'smo', 'SMO143G0050' => 'smo', 'SMO358G0382' => 'smo', 'Solyc02g082850.3' => 'sly', 'Solyc07g065340.1' => 'sly', 'Solyc10g006040.1' => 'sly', 'Solyc12g008780.2' => 'sly', 'Sopen02g027650' => 'spe', 'Sopen07g033540' => 'spe', 'Sopen10g002000' => 'spe', 'Sopen12g003710' => 'spe', 'Sp1g41530' => 'spa', 'Sp3g11280' => 'spa', 'Sp3g30970' => 'spa', 'Sp6g18510' => 'spa', 'Sp7g33410' => 'spa', 'TAR383G0004' => 'tar', 'TAR625G0710' => 'tar', 'TAR626G1619' => 'tar', 'TAR629G0660' => 'tar', 'TAR629G3524' => 'tar', 'THA.LOC104807433' => 'tha', 'THA.LOC104811741' => 'tha', 'THA.LOC104815701' => 'tha', 'THA.LOC104817749' => 'tha', 'THA.LOC104822738' => 'tha', 'Thecc.01G007200' => 'tca', 'Thecc.06G237500' => 'tca', 'Thecc.07G017000' => 'tca', 'Thecc.09G092300' => 'tca', 'Thhalv10012384m.g' => 'esa', 'Thhalv10014167m.g' => 'esa', 'Thhalv10020893m.g' => 'esa', 'Thhalv10022779m.g' => 'esa', 'Thhalv10025792m.g' => 'esa', 'TPR.G1097' => 'tpr', 'TPR.G25139' => 'tpr', 'TPR.G27357' => 'tpr', 'TPR.G8597' => 'tpr', 'TWI34G0677' => 'twi', 'TWI38G2328' => 'twi', 'TWI39G1095' => 'twi', 'TWI53G0535' => 'twi', 'TWI63G1380' => 'twi', 'TWI63G1837' => 'twi', 'TWI73G0347' => 'twi', 'unitig_62.g23296' => 'ugi', 'unitig_699.g19416' => 'ugi', 'unitig_85.g27347' => 'ugi', 'vmacro09660' => 'vma', 'vmacro09661' => 'vma', 'vmacro18815' => 'vma', 'vmacro20523' => 'vma', 'VMungo0251G1201' => 'vmu', 'VMungo0331G1032' => 'vmu', 'VMungo0540G0152' => 'vmu', 'VMungo0647G0913' => 'vmu', 'VMungo1215G1556' => 'vmu', 'VMungo1215G2799' => 'vmu', 'VMungo1383G0928' => 'vmu', 'Zm00001eb002740' => 'zma', 'Zm00001eb293180' => 'zma', 'Zm00001eb361640' => 'zma' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D001205', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001205' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D001205', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '518', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001205' ) ), 'genes' => array( 'A03p13200' => 'bna', 'A05p17220' => 'bna', 'A06p33740' => 'bna', 'A08p00160' => 'bna', 'A10p14100' => 'bna', 'Aa31LG10G240' => 'aar', 'Aa31LG3G12710' => 'aar', 'Aa31LG6G12600' => 'aar', 'Aa31LG8G14910' => 'aar', 'Aa31LG8G320' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3598' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2981' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5574' => 'aag', 'Actinidia05020' => 'ach', 'Actinidia05025' => 'ach', 'Actinidia17385' => 'ach', 'Actinidia21748' => 'ach', 'Ah.04g163990' => 'amhyb', 'Ah.06g181220' => 'amhyb', 'AL1G64070' => 'aly', 'AL3G24850' => 'aly', 'AL3G50600' => 'aly', 'AL7G15500' => 'aly', 'AL8G32600' => 'aly', 'Aqoxy2G02475' => 'aox', 'Aqoxy4G02246' => 'aox', 'Aqoxy6G01700' => 'aox', 'Aqoxy7G01252' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2DX304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82Q4AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97A83C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98EFWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AM8NHJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3L4BD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0DJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4CMZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA7XEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NTH9NT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAFX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN33QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF5NK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VS0KPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMD1K9' => 'arhy', 'AT1G55920' => 'ath', 'AT2G17640' => 'ath', 'AT3G13110' => 'ath', 'AT4G35640' => 'ath', 'AT5G56760' => 'ath', 'ATR0624G017' => 'atr', 'ATR0652G003' => 'atr', 'ATR0661G415' => 'atr', 'Atru.chr1.2329' => 'acertr', 'Atru.chr11.1489' => 'acertr', 'Atru.chr2.3663' => 'acertr', 'Atru.chr3.955' => 'acertr', 'Atru.chr3.966' => 'acertr', 'AUR62033777' => 'cqu', 'AUR62040649' => 'cqu', 'BcaB01g02639' => 'bca', 'BcaB01g04419' => 'bca', 'BcaB02g10790' => 'bca', 'BcaB03g12419' => 'bca', 'BcaB04g16927' => 'bca', 'BcaB06g25487' => 'bca', 'BcaB06g28992' => 'bca', 'BcaB07g33180' => 'bca', 'BcaB08g36060' => 'bca', 'BcaC01g02902' => 'bca', 'BcaC01g06446' => 'bca', 'BcaC02g11492' => 'bca', 'BcaC04g20055' => 'bca', 'BcaC05g29211' => 'bca', 'BcaC07g40590' => 'bca', 'BcaC08g43662' => 'bca', 'BcaC08g43664' => 'bca', 'BcaC08g44228' => 'bca', 'BolC3t13985H' => 'bol', 'BolC3t18118H' => 'bol', 'BolC3t21633H' => 'bol', 'BolC4t23052H' => 'bol', 'BolC6t36167H' => 'bol', 'BolC6t36830H' => 'bol', 'BolC9t57683H' => 'bol', 'BolC9t58999H' => 'bol', 'BraA03t10632Z' => 'bra', 'BraA05t20622Z' => 'bra', 'BraA06t26309Z' => 'bra', 'BraA08t32072Z' => 'bra', 'BraA10t43501Z' => 'bra', 'BraSC56t46392Z' => 'bra', 'C03p15470' => 'bna', 'C03p58570' => 'bna', 'C03p93350' => 'bna', 'C04p14780' => 'bna', 'C06p16300' => 'bna', 'C08p42160' => 'bna', 'C09p48330' => 'bna', 'C09p61610' => 'bna', 'CAN.G1055.2' => 'can', 'CAN.G123.3' => 'can', 'CAN.G1241.17' => 'can', 'CAN.G337.20' => 'can', 'CAN.G469.4' => 'can', 'CAN.G492.30' => 'can', 'CAN.G553.20' => 'can', 'CAN.G626.20' => 'can', 'CAN.G890.75' => 'can', 'CANSAT11G1841' => 'cansat', 'CANSAT25G0563' => 'cansat', 'CANSAT56G1177' => 'cansat', 'CANSAT56G1842' => 'cansat', 'CANSAT56G4457' => 'cansat', 'CARHR045640' => 'chi', 'CARHR087700' => 'chi', 'CARHR107840' => 'chi', 'CARHR243970' => 'chi', 'CARHR270510' => 'chi', 'Carub.0001s4430' => 'cru', 'Carub.0001s4452' => 'cru', 'Carub.0003s1245' => 'cru', 'Carub.0003s3172' => 'cru', 'Carub.0007s0466' => 'cru', 'Carub.0008s1724' => 'cru', 'Ca_06385_v3' => 'car', 'Ca_20178_v3' => 'car', 'Ca_23588_v3' => 'car', 'Ca_24962_v3' => 'car', 'Ca_29966_v3' => 'car', 'CBR_g22982' => 'cbr', 'CBR_g26147' => 'cbr', 'CBR_g32072' => 'cbr', 'CBR_g41302' => 'cbr', 'CBR_g46439' => 'cbr', 'Cc04_g02110' => 'ccan', 'Cc05_g14780' => 'ccan', 'Cc06_g11160' => 'ccan', 'Cc07_g11640' => 'ccan', 'CDE04G1452' => 'cde', 'CDE04G2926' => 'cde', 'CDE05G0521' => 'cde', 'CDE05G0623' => 'cde', 'CDE05G0661' => 'cde', 'CDE07G1605' => 'cde', 'Cfa000059' => 'cfa', 'Cfa003100' => 'cfa', 'Cfa020216' => 'cfa', 'Cfa020217' => 'cfa', 'Ciclev10008523m.g' => 'ccl', 'Ciclev10009063m.g' => 'ccl', 'CiPaw.03G218100' => 'cil', 'CiPaw.07G004200' => 'cil', 'CiPaw.09G106600' => 'cil', 'CiPaw.11G202100' => 'cil', 'ClCG01G020830' => 'cla', 'ClCG09G021050' => 'cla', 'COL.COLO4_02647' => 'col', 'COL.COLO4_09804' => 'col', 'COL.COLO4_18223' => 'col', 'COL.COLO4_18224' => 'col', 'COL.COLO4_22536' => 'col', 'Cpa.g.sc12.177' => 'cpa', 'Cpa.g.sc27.251' => 'cpa', 'Cpa.g.sc55.185' => 'cpa', 'Cre10.g466750' => 'cre', 'Cre17.g713850' => 'cre', 'CsaV3_2G017890' => 'csa', 'CsaV3_6G047800' => 'csa', 'CsaV3_7G018620' => 'csa', 'CSS0003072' => 'camsi', 'CSS0009537' => 'camsi', 'CSS0009950' => 'camsi', 'CSS0013877' => 'camsi', 'CSS0023998' => 'camsi', 'CSS0026018' => 'camsi', 'CSS0026852' => 'camsi', 'CSS0029099' => 'camsi', 'CSS0043861' => 'camsi', 'CSS0044287' => 'camsi', 'CSS0044826' => 'camsi', 'DCAR_013222' => 'dca', 'DCAR_017087' => 'dca', 'DCAR_032248' => 'dca', 'Dinv04406' => 'din', 'Dinv04557' => 'din', 'Dinv30392' => 'din', 'Dinv36749' => 'din', 'Dinv40172' => 'din', 'Dinv42298' => 'din', 'Duzib147G1388' => 'dzi', 'Duzib168G0024' => 'dzi', 'Duzib213G0174' => 'dzi', 'ECA232G3761' => 'eca', 'ECA234G2581' => 'eca', 'ECA236G0418' => 'eca', 'ECA238G2872' => 'eca', 'ECA240G3456' => 'eca', 'ECA246G3133' => 'eca', 'EL10Ac4g07608' => 'bvu', 'EL10Ac4g08421' => 'bvu', 'EL10Ac4g08422' => 'bvu', 'Eucgr.C00914' => 'egr', 'Eucgr.F03698' => 'egr', 'Eucgr.J02527' => 'egr', 'FAN11G1246' => 'fan', 'FAN16G1863' => 'fan', 'FAN19G0124' => 'fan', 'FAN19G1834' => 'fan', 'FAN21G1318' => 'fan', 'FAN23G3039' => 'fan', 'FAN26G1224' => 'fan', 'FAN26G2695' => 'fan', 'FAN26G3274' => 'fan', 'FAN28G0616' => 'fan', 'FAN28G1918' => 'fan', 'FvH4_1g07140' => 'fve', 'FvH4_1g10540' => 'fve', 'FvH4_3g29510' => 'fve', 'Glyma.01G160000' => 'gma', 'Glyma.02G042000' => 'gma', 'Glyma.02G299100' => 'gma', 'Glyma.07G058800' => 'gma', 'Glyma.08G327400' => 'gma', 'Glyma.11G084100' => 'gma', 'Glyma.14G014700' => 'gma', 'Glyma.16G027700' => 'gma', 'Glyma.16G118800' => 'gma', 'Glyma.18G080000' => 'gma', 'Gohir.A01G089900' => 'ghi', 'Gohir.A02G177000' => 'ghi', 'Gohir.A13G134101' => 'ghi', 'Gohir.A13G193700' => 'ghi', 'Gohir.D01G075200' => 'ghi', 'Gohir.D03G002900' => 'ghi', 'Gohir.D13G137600' => 'ghi', 'Gohir.D13G199500' => 'ghi', 'Gorai.002G098400' => 'gra', 'Gorai.003G003100' => 'gra', 'Gorai.013G154200' => 'gra', 'Gorai.013G228200' => 'gra', 'GSVIVG01003478001' => 'vvi', 'GSVIVG01003838001' => 'vvi', 'GSVIVG01014639001' => 'vvi', 'GSVIVG01015228001' => 'vvi', 'HanXRQChr03g0077731' => 'han', 'HanXRQChr04g0112571' => 'han', 'HanXRQChr04g0119361' => 'han', 'HanXRQChr05g0149311' => 'han', 'HanXRQChr09g0276371' => 'han', 'HanXRQChr11g0324721' => 'han', 'HanXRQChr11g0333431' => 'han', 'HanXRQChr12g0354721' => 'han', 'HanXRQChr14g0431241' => 'han', 'HanXRQChr14g0442381' => 'han', 'Haze_03676' => 'cav', 'Haze_06992' => 'cav', 'Haze_09801' => 'cav', 'Haze_09802' => 'cav', 'Haze_25900' => 'cav', 'Haze_27653' => 'cav', 'Hma1.2p1_0036F.1_g022660' => 'hma', 'Hma1.2p1_0388F.1_g142210' => 'hma', 'Hma1.2p1_0657F.1_g196890' => 'hma', 'Hma1.2p1_0663F.1_g198760' => 'hma', 'Hma1.2p1_0663F.1_g198900' => 'hma', 'Hma1.2p1_0800F.1_g219950' => 'hma', 'Hma1.2p1_0800F.1_g219960' => 'hma', 'Hma1.2p1_2491F.1_g323230' => 'hma', 'HPP92_005550' => 'vpl', 'HPP92_020398' => 'vpl', 'HPP92_022693' => 'vpl', 'HPP92_022695' => 'vpl', 'HPP92_024891' => 'vpl', 'Hund03616' => 'sun', 'Hund10417' => 'sun', 'Lalb_Chr05g0211931' => 'lal', 'Lalb_Chr10g0100221' => 'lal', 'Lalb_Chr10g0107381' => 'lal', 'Lalb_Chr15g0081981' => 'lal', 'Lalb_Chr17g0342301' => 'lal', 'Lalb_Chr17g0348881' => 'lal', 'Lalb_Chr20g0113991' => 'lal', 'Lj1C888T3' => 'lonja', 'Lj1C888T4' => 'lonja', 'Lj2g0003640' => 'lja', 'Lj2P259T13' => 'lonja', 'Lj3g0022427' => 'lja', 'Lj4A232T48' => 'lonja', 'Lj4C309G3' => 'lonja', 'Lj5A47T39' => 'lonja', 'Lj6g0007553' => 'lja', 'Lj8P177T19' => 'lonja', 'LjContig00081g0010826' => 'lja', 'Lsat_1_v5_gn_2_74441' => 'lsa', 'Lsat_1_v5_gn_4_95580' => 'lsa', 'Lsat_1_v5_gn_5_145700' => 'lsa', 'Lsat_1_v5_gn_7_113221' => 'lsa', 'Lsat_1_v5_gn_9_21861' => 'lsa', 'Lsat_1_v5_gn_9_90540' => 'lsa', 'Manes.02G112600' => 'mes', 'Manes.03G031800' => 'mes', 'Manes.03G139860' => 'mes', 'Manes.15G062000' => 'mes', 'Mapoly0010s0095' => 'mpo', 'Mapoly0029s0059' => 'mpo', 'Mapoly0076s0098' => 'mpo', 'MBI08_g24262_MAGBIO' => 'mbi', 'MBI08_g24263_MAGBIO' => 'mbi', 'MBI19_g42006_MAGBIO' => 'mbi', 'MBI19_g44081_MAGBIO' => 'mbi', 'MBI19_g45745_MAGBIO' => 'mbi', 'MCO02G080' => 'mco', 'MCO05G462' => 'mco', 'MCO15G451' => 'mco', 'MD02G1075400' => 'mdo', 'MD02G1075800' => 'mdo', 'MD02G1119500' => 'mdo', 'MD02G1119600' => 'mdo', 'MD02G1238300' => 'mdo', 'MD03G1187100' => 'mdo', 'MD11G1202100' => 'mdo', 'MD15G1233400' => 'mdo', 'Medtr3g058410' => 'mtr', 'Medtr5g023760' => 'mtr', 'Medtr5g095470' => 'mtr', 'Medtr8g028040' => 'mtr', 'MELO3C003551.2' => 'cme', 'MELO3C007969.2' => 'cme', 'MELO3C023285.2' => 'cme', 'MELO3C024900.2' => 'cme', 'Migut.H01771' => 'egut', 'Migut.J00592' => 'egut', 'Migut.K00586' => 'egut', 'Migut.M01431' => 'egut', 'Migut.M01667' => 'egut', 'MSTRG.10574' => 'ama', 'MSTRG.13014' => 'ama', 'MSTRG.15786' => 'ama', 'MSTRG.16042' => 'ama', 'MSTRG.19528' => 'ama', 'MSTRG.6989' => 'ama', 'Nitab4.5_0000461g0140' => 'nta', 'Nitab4.5_0000540g0230' => 'nta', 'Nitab4.5_0000702g0070' => 'nta', 'Nitab4.5_0002967g0050' => 'nta', 'Nitab4.5_0003491g0050' => 'nta', 'Nitab4.5_0006756g0030' => 'nta', 'Nitab4.5_0009088g0010' => 'nta', 'Nitab4.5_0010958g0010' => 'nta', 'Nitab4.5_0028970g0010' => 'nta', 'Nn1g03217' => 'nnu', 'Nn5g30958' => 'nnu', 'Nn6g35428' => 'nnu', 'Oeu002772.1' => 'oeu', 'Oeu034557.1' => 'oeu', 'Oeu037597.1' => 'oeu', 'Oeu041430.1' => 'oeu', 'Oeu044497.1' => 'oeu', 'Oeu049350.2' => 'oeu', 'Oeu057088.1' => 'oeu', 'Os03g0133900' => 'osa', 'Os03g0185000' => 'osa', 'Os03g0196600' => 'osa', 'Os05g0533500' => 'osa', 'Peaxi162Scf00079g00143' => 'pax', 'Peaxi162Scf00285g00073' => 'pax', 'Peaxi162Scf00498g00131' => 'pax', 'Peaxi162Scf00515g00045' => 'pax', 'Peaxi162Scf01183g00139' => 'pax', 'PGR031G1944' => 'pgr', 'PGR083G1606' => 'pgr', 'PGR102G2788' => 'pgr', 'PGR142G2479' => 'pgr', 'PGSC0003DMG400000282' => 'stu', 'PGSC0003DMG400001573' => 'stu', 'PGSC0003DMG400014379' => 'stu', 'PGSC0003DMG400022181' => 'stu', 'Phvul.001G170600' => 'pvu', 'Phvul.002G114700' => 'pvu', 'Phvul.003G269000' => 'pvu', 'Phvul.006G055200' => 'pvu', 'Phvul.008G277800' => 'pvu', 'Phvul.010G110600' => 'pvu', 'Potri.001G365500' => 'ptr', 'Potri.005G099700' => 'ptr', 'Potri.011G068001' => 'ptr', 'Potri.013G109500' => 'ptr', 'Potri.015G147000' => 'ptr', 'Pp3c20_3500' => 'ppa', 'Pp3c23_17150' => 'ppa', 'Pp3c23_21600' => 'ppa', 'Pp3c24_14040' => 'ppa', 'Pp3c8_18470' => 'ppa', 'PRCOL_00000029' => 'pco', 'PRCOL_00002113' => 'pco', 'PRCOL_00002366' => 'pco', 'Prupe.4G239400' => 'ppe', 'Prupe.4G239500' => 'ppe', 'Prupe.7G179500' => 'ppe', 'Prupe.7G212700' => 'ppe', 'Psat2g008240' => 'psa', 'Psat2g008280' => 'psa', 'Psat2g008320' => 'psa', 'Psat2g129920' => 'psa', 'Psat4g158520' => 'psa', 'Psat5g173800' => 'psa', 'Psat7g256840' => 'psa', 'PSO063G0739' => 'pso', 'PSO063G2203' => 'pso', 'PSO063G5440' => 'pso', 'PSO170G5797' => 'pso', 'PSO541G0062' => 'pso', 'PSO541G3229' => 'pso', 'PSO675G0721' => 'pso', 'PSO675G9329' => 'pso', 'PSO832G0250' => 'pso', 'PSO832G2046' => 'pso', 'PSO832G4406' => 'pso', 'QL02p063027' => 'qlo', 'QL05p068287' => 'qlo', 'QL05p068781' => 'qlo', 'QL06p052727' => 'qlo', 'QL06p053842' => 'qlo', 'QL08p004961' => 'qlo', 'RcHm_v2.0_Chr2g0093021' => 'rch', 'RcHm_v2.0_Chr2g0097471' => 'rch', 'RcHm_v2.0_Chr2g0097591' => 'rch', 'RcHm_v2.0_Chr5g0054471' => 'rch', 'Rhsim04G0014100' => 'rsi', 'Rhsim08G0232100' => 'rsi', 'Rhsim10G0198900' => 'rsi', 'Rhsim13G0142600' => 'rsi', 'Sabra05G0082400' => 'sbr', 'Sabra13G0094400' => 'sbr', 'Sabra15G0156000' => 'sbr', 'Sabra16G0239100' => 'sbr', 'SalBow6G3897' => 'sbo', 'SalBow8G0744' => 'sbo', 'SalBow8G0917' => 'sbo', 'Sc03g0011120' => 'sci', 'Sc07g0001310' => 'sci', 'Sc16g0007950' => 'sci', 'Sed0000282' => 'sed', 'Sed0002951' => 'sed', 'Sed0005975' => 'sed', 'Sed0015535' => 'sed', 'Sed0019186' => 'sed', 'SEGI_03940' => 'sgi', 'SEGI_11183' => 'sgi', 'SEGI_27318' => 'sgi', 'SEGI_39826' => 'sgi', 'SGA_v2.0_scaffold168G38538' => 'sas', 'SGA_v2.0_scaffold62G21593' => 'sas', 'SGA_v2.0_scaffold630G53289' => 'sas', 'SGA_v2.0_scaffold8G04394' => 'sas', 'SHI24909' => 'shi', 'SMO134G0076' => 'smo', 'SMO143G0050' => 'smo', 'SMO358G0382' => 'smo', 'Solyc02g082850.3' => 'sly', 'Solyc07g065340.1' => 'sly', 'Solyc10g006040.1' => 'sly', 'Solyc12g008780.2' => 'sly', 'Sopen02g027650' => 'spe', 'Sopen07g033540' => 'spe', 'Sopen10g002000' => 'spe', 'Sopen12g003710' => 'spe', 'Sp1g41530' => 'spa', 'Sp3g11280' => 'spa', 'Sp3g30970' => 'spa', 'Sp6g18510' => 'spa', 'Sp7g33410' => 'spa', 'TAR383G0004' => 'tar', 'TAR625G0710' => 'tar', 'TAR626G1619' => 'tar', 'TAR629G0660' => 'tar', 'TAR629G3524' => 'tar', 'THA.LOC104807433' => 'tha', 'THA.LOC104811741' => 'tha', 'THA.LOC104815701' => 'tha', 'THA.LOC104817749' => 'tha', 'THA.LOC104822738' => 'tha', 'Thecc.01G007200' => 'tca', 'Thecc.06G237500' => 'tca', 'Thecc.07G017000' => 'tca', 'Thecc.09G092300' => 'tca', 'Thhalv10012384m.g' => 'esa', 'Thhalv10014167m.g' => 'esa', 'Thhalv10020893m.g' => 'esa', 'Thhalv10022779m.g' => 'esa', 'Thhalv10025792m.g' => 'esa', 'TPR.G1097' => 'tpr', 'TPR.G25139' => 'tpr', 'TPR.G27357' => 'tpr', 'TPR.G8597' => 'tpr', 'TWI34G0677' => 'twi', 'TWI38G2328' => 'twi', 'TWI39G1095' => 'twi', 'TWI53G0535' => 'twi', 'TWI63G1380' => 'twi', 'TWI63G1837' => 'twi', 'TWI73G0347' => 'twi', 'unitig_62.g23296' => 'ugi', 'unitig_699.g19416' => 'ugi', 'unitig_85.g27347' => 'ugi', 'vmacro09660' => 'vma', 'vmacro09661' => 'vma', 'vmacro18815' => 'vma', 'vmacro20523' => 'vma', 'VMungo0251G1201' => 'vmu', 'VMungo0331G1032' => 'vmu', 'VMungo0540G0152' => 'vmu', 'VMungo0647G0913' => 'vmu', 'VMungo1215G1556' => 'vmu', 'VMungo1215G2799' => 'vmu', 'VMungo1383G0928' => 'vmu', 'Zm00001eb002740' => 'zma', 'Zm00001eb293180' => 'zma', 'Zm00001eb361640' => 'zma' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D001205' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001205' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D001205' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001205' )include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151
<label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?>
<label>Source(s)</label>
<select class='form form-select' name='ontology_source_group' id='ontology_source_group'>
<?php foreach ($source_groups_information['available'] as $source_group_id) : ?>
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001205', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '518', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A03p13200' => 'bna', 'A05p17220' => 'bna', 'A06p33740' => 'bna', 'A08p00160' => 'bna', 'A10p14100' => 'bna', 'Aa31LG10G240' => 'aar', 'Aa31LG3G12710' => 'aar', 'Aa31LG6G12600' => 'aar', 'Aa31LG8G14910' => 'aar', 'Aa31LG8G320' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3598' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2981' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5574' => 'aag', 'Actinidia05020' => 'ach', 'Actinidia05025' => 'ach', 'Actinidia17385' => 'ach', 'Actinidia21748' => 'ach', 'Ah.04g163990' => 'amhyb', 'Ah.06g181220' => 'amhyb', 'AL1G64070' => 'aly', 'AL3G24850' => 'aly', 'AL3G50600' => 'aly', 'AL7G15500' => 'aly', 'AL8G32600' => 'aly', 'Aqoxy2G02475' => 'aox', 'Aqoxy4G02246' => 'aox', 'Aqoxy6G01700' => 'aox', 'Aqoxy7G01252' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2DX304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82Q4AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97A83C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98EFWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AM8NHJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3L4BD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0DJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4CMZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA7XEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NTH9NT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAFX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN33QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF5NK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VS0KPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMD1K9' => 'arhy', 'AT1G55920' => 'ath', 'AT2G17640' => 'ath', 'AT3G13110' => 'ath', 'AT4G35640' => 'ath', 'AT5G56760' => 'ath', 'ATR0624G017' => 'atr', 'ATR0652G003' => 'atr', 'ATR0661G415' => 'atr', 'Atru.chr1.2329' => 'acertr', 'Atru.chr11.1489' => 'acertr', 'Atru.chr2.3663' => 'acertr', 'Atru.chr3.955' => 'acertr', 'Atru.chr3.966' => 'acertr', 'AUR62033777' => 'cqu', 'AUR62040649' => 'cqu', 'BcaB01g02639' => 'bca', 'BcaB01g04419' => 'bca', 'BcaB02g10790' => 'bca', 'BcaB03g12419' => 'bca', 'BcaB04g16927' => 'bca', 'BcaB06g25487' => 'bca', 'BcaB06g28992' => 'bca', 'BcaB07g33180' => 'bca', 'BcaB08g36060' => 'bca', 'BcaC01g02902' => 'bca', 'BcaC01g06446' => 'bca', 'BcaC02g11492' => 'bca', 'BcaC04g20055' => 'bca', 'BcaC05g29211' => 'bca', 'BcaC07g40590' => 'bca', 'BcaC08g43662' => 'bca', 'BcaC08g43664' => 'bca', 'BcaC08g44228' => 'bca', 'BolC3t13985H' => 'bol', 'BolC3t18118H' => 'bol', 'BolC3t21633H' => 'bol', 'BolC4t23052H' => 'bol', 'BolC6t36167H' => 'bol', 'BolC6t36830H' => 'bol', 'BolC9t57683H' => 'bol', 'BolC9t58999H' => 'bol', 'BraA03t10632Z' => 'bra', 'BraA05t20622Z' => 'bra', 'BraA06t26309Z' => 'bra', 'BraA08t32072Z' => 'bra', 'BraA10t43501Z' => 'bra', 'BraSC56t46392Z' => 'bra', 'C03p15470' => 'bna', 'C03p58570' => 'bna', 'C03p93350' => 'bna', 'C04p14780' => 'bna', 'C06p16300' => 'bna', 'C08p42160' => 'bna', 'C09p48330' => 'bna', 'C09p61610' => 'bna', 'CAN.G1055.2' => 'can', 'CAN.G123.3' => 'can', 'CAN.G1241.17' => 'can', 'CAN.G337.20' => 'can', 'CAN.G469.4' => 'can', 'CAN.G492.30' => 'can', 'CAN.G553.20' => 'can', 'CAN.G626.20' => 'can', 'CAN.G890.75' => 'can', 'CANSAT11G1841' => 'cansat', 'CANSAT25G0563' => 'cansat', 'CANSAT56G1177' => 'cansat', 'CANSAT56G1842' => 'cansat', 'CANSAT56G4457' => 'cansat', 'CARHR045640' => 'chi', 'CARHR087700' => 'chi', 'CARHR107840' => 'chi', 'CARHR243970' => 'chi', 'CARHR270510' => 'chi', 'Carub.0001s4430' => 'cru', 'Carub.0001s4452' => 'cru', 'Carub.0003s1245' => 'cru', 'Carub.0003s3172' => 'cru', 'Carub.0007s0466' => 'cru', 'Carub.0008s1724' => 'cru', 'Ca_06385_v3' => 'car', 'Ca_20178_v3' => 'car', 'Ca_23588_v3' => 'car', 'Ca_24962_v3' => 'car', 'Ca_29966_v3' => 'car', 'CBR_g22982' => 'cbr', 'CBR_g26147' => 'cbr', 'CBR_g32072' => 'cbr', 'CBR_g41302' => 'cbr', 'CBR_g46439' => 'cbr', 'Cc04_g02110' => 'ccan', 'Cc05_g14780' => 'ccan', 'Cc06_g11160' => 'ccan', 'Cc07_g11640' => 'ccan', 'CDE04G1452' => 'cde', 'CDE04G2926' => 'cde', 'CDE05G0521' => 'cde', 'CDE05G0623' => 'cde', 'CDE05G0661' => 'cde', 'CDE07G1605' => 'cde', 'Cfa000059' => 'cfa', 'Cfa003100' => 'cfa', 'Cfa020216' => 'cfa', 'Cfa020217' => 'cfa', 'Ciclev10008523m.g' => 'ccl', 'Ciclev10009063m.g' => 'ccl', 'CiPaw.03G218100' => 'cil', 'CiPaw.07G004200' => 'cil', 'CiPaw.09G106600' => 'cil', 'CiPaw.11G202100' => 'cil', 'ClCG01G020830' => 'cla', 'ClCG09G021050' => 'cla', 'COL.COLO4_02647' => 'col', 'COL.COLO4_09804' => 'col', 'COL.COLO4_18223' => 'col', 'COL.COLO4_18224' => 'col', 'COL.COLO4_22536' => 'col', 'Cpa.g.sc12.177' => 'cpa', 'Cpa.g.sc27.251' => 'cpa', 'Cpa.g.sc55.185' => 'cpa', 'Cre10.g466750' => 'cre', 'Cre17.g713850' => 'cre', 'CsaV3_2G017890' => 'csa', 'CsaV3_6G047800' => 'csa', 'CsaV3_7G018620' => 'csa', 'CSS0003072' => 'camsi', 'CSS0009537' => 'camsi', 'CSS0009950' => 'camsi', 'CSS0013877' => 'camsi', 'CSS0023998' => 'camsi', 'CSS0026018' => 'camsi', 'CSS0026852' => 'camsi', 'CSS0029099' => 'camsi', 'CSS0043861' => 'camsi', 'CSS0044287' => 'camsi', 'CSS0044826' => 'camsi', 'DCAR_013222' => 'dca', 'DCAR_017087' => 'dca', 'DCAR_032248' => 'dca', 'Dinv04406' => 'din', 'Dinv04557' => 'din', 'Dinv30392' => 'din', 'Dinv36749' => 'din', 'Dinv40172' => 'din', 'Dinv42298' => 'din', 'Duzib147G1388' => 'dzi', 'Duzib168G0024' => 'dzi', 'Duzib213G0174' => 'dzi', 'ECA232G3761' => 'eca', 'ECA234G2581' => 'eca', 'ECA236G0418' => 'eca', 'ECA238G2872' => 'eca', 'ECA240G3456' => 'eca', 'ECA246G3133' => 'eca', 'EL10Ac4g07608' => 'bvu', 'EL10Ac4g08421' => 'bvu', 'EL10Ac4g08422' => 'bvu', 'Eucgr.C00914' => 'egr', 'Eucgr.F03698' => 'egr', 'Eucgr.J02527' => 'egr', 'FAN11G1246' => 'fan', 'FAN16G1863' => 'fan', 'FAN19G0124' => 'fan', 'FAN19G1834' => 'fan', 'FAN21G1318' => 'fan', 'FAN23G3039' => 'fan', 'FAN26G1224' => 'fan', 'FAN26G2695' => 'fan', 'FAN26G3274' => 'fan', 'FAN28G0616' => 'fan', 'FAN28G1918' => 'fan', 'FvH4_1g07140' => 'fve', 'FvH4_1g10540' => 'fve', 'FvH4_3g29510' => 'fve', 'Glyma.01G160000' => 'gma', 'Glyma.02G042000' => 'gma', 'Glyma.02G299100' => 'gma', 'Glyma.07G058800' => 'gma', 'Glyma.08G327400' => 'gma', 'Glyma.11G084100' => 'gma', 'Glyma.14G014700' => 'gma', 'Glyma.16G027700' => 'gma', 'Glyma.16G118800' => 'gma', 'Glyma.18G080000' => 'gma', 'Gohir.A01G089900' => 'ghi', 'Gohir.A02G177000' => 'ghi', 'Gohir.A13G134101' => 'ghi', 'Gohir.A13G193700' => 'ghi', 'Gohir.D01G075200' => 'ghi', 'Gohir.D03G002900' => 'ghi', 'Gohir.D13G137600' => 'ghi', 'Gohir.D13G199500' => 'ghi', 'Gorai.002G098400' => 'gra', 'Gorai.003G003100' => 'gra', 'Gorai.013G154200' => 'gra', 'Gorai.013G228200' => 'gra', 'GSVIVG01003478001' => 'vvi', 'GSVIVG01003838001' => 'vvi', 'GSVIVG01014639001' => 'vvi', 'GSVIVG01015228001' => 'vvi', 'HanXRQChr03g0077731' => 'han', 'HanXRQChr04g0112571' => 'han', 'HanXRQChr04g0119361' => 'han', 'HanXRQChr05g0149311' => 'han', 'HanXRQChr09g0276371' => 'han', 'HanXRQChr11g0324721' => 'han', 'HanXRQChr11g0333431' => 'han', 'HanXRQChr12g0354721' => 'han', 'HanXRQChr14g0431241' => 'han', 'HanXRQChr14g0442381' => 'han', 'Haze_03676' => 'cav', 'Haze_06992' => 'cav', 'Haze_09801' => 'cav', 'Haze_09802' => 'cav', 'Haze_25900' => 'cav', 'Haze_27653' => 'cav', 'Hma1.2p1_0036F.1_g022660' => 'hma', 'Hma1.2p1_0388F.1_g142210' => 'hma', 'Hma1.2p1_0657F.1_g196890' => 'hma', 'Hma1.2p1_0663F.1_g198760' => 'hma', 'Hma1.2p1_0663F.1_g198900' => 'hma', 'Hma1.2p1_0800F.1_g219950' => 'hma', 'Hma1.2p1_0800F.1_g219960' => 'hma', 'Hma1.2p1_2491F.1_g323230' => 'hma', 'HPP92_005550' => 'vpl', 'HPP92_020398' => 'vpl', 'HPP92_022693' => 'vpl', 'HPP92_022695' => 'vpl', 'HPP92_024891' => 'vpl', 'Hund03616' => 'sun', 'Hund10417' => 'sun', 'Lalb_Chr05g0211931' => 'lal', 'Lalb_Chr10g0100221' => 'lal', 'Lalb_Chr10g0107381' => 'lal', 'Lalb_Chr15g0081981' => 'lal', 'Lalb_Chr17g0342301' => 'lal', 'Lalb_Chr17g0348881' => 'lal', 'Lalb_Chr20g0113991' => 'lal', 'Lj1C888T3' => 'lonja', 'Lj1C888T4' => 'lonja', 'Lj2g0003640' => 'lja', 'Lj2P259T13' => 'lonja', 'Lj3g0022427' => 'lja', 'Lj4A232T48' => 'lonja', 'Lj4C309G3' => 'lonja', 'Lj5A47T39' => 'lonja', 'Lj6g0007553' => 'lja', 'Lj8P177T19' => 'lonja', 'LjContig00081g0010826' => 'lja', 'Lsat_1_v5_gn_2_74441' => 'lsa', 'Lsat_1_v5_gn_4_95580' => 'lsa', 'Lsat_1_v5_gn_5_145700' => 'lsa', 'Lsat_1_v5_gn_7_113221' => 'lsa', 'Lsat_1_v5_gn_9_21861' => 'lsa', 'Lsat_1_v5_gn_9_90540' => 'lsa', 'Manes.02G112600' => 'mes', 'Manes.03G031800' => 'mes', 'Manes.03G139860' => 'mes', 'Manes.15G062000' => 'mes', 'Mapoly0010s0095' => 'mpo', 'Mapoly0029s0059' => 'mpo', 'Mapoly0076s0098' => 'mpo', 'MBI08_g24262_MAGBIO' => 'mbi', 'MBI08_g24263_MAGBIO' => 'mbi', 'MBI19_g42006_MAGBIO' => 'mbi', 'MBI19_g44081_MAGBIO' => 'mbi', 'MBI19_g45745_MAGBIO' => 'mbi', 'MCO02G080' => 'mco', 'MCO05G462' => 'mco', 'MCO15G451' => 'mco', 'MD02G1075400' => 'mdo', 'MD02G1075800' => 'mdo', 'MD02G1119500' => 'mdo', 'MD02G1119600' => 'mdo', 'MD02G1238300' => 'mdo', 'MD03G1187100' => 'mdo', 'MD11G1202100' => 'mdo', 'MD15G1233400' => 'mdo', 'Medtr3g058410' => 'mtr', 'Medtr5g023760' => 'mtr', 'Medtr5g095470' => 'mtr', 'Medtr8g028040' => 'mtr', 'MELO3C003551.2' => 'cme', 'MELO3C007969.2' => 'cme', 'MELO3C023285.2' => 'cme', 'MELO3C024900.2' => 'cme', 'Migut.H01771' => 'egut', 'Migut.J00592' => 'egut', 'Migut.K00586' => 'egut', 'Migut.M01431' => 'egut', 'Migut.M01667' => 'egut', 'MSTRG.10574' => 'ama', 'MSTRG.13014' => 'ama', 'MSTRG.15786' => 'ama', 'MSTRG.16042' => 'ama', 'MSTRG.19528' => 'ama', 'MSTRG.6989' => 'ama', 'Nitab4.5_0000461g0140' => 'nta', 'Nitab4.5_0000540g0230' => 'nta', 'Nitab4.5_0000702g0070' => 'nta', 'Nitab4.5_0002967g0050' => 'nta', 'Nitab4.5_0003491g0050' => 'nta', 'Nitab4.5_0006756g0030' => 'nta', 'Nitab4.5_0009088g0010' => 'nta', 'Nitab4.5_0010958g0010' => 'nta', 'Nitab4.5_0028970g0010' => 'nta', 'Nn1g03217' => 'nnu', 'Nn5g30958' => 'nnu', 'Nn6g35428' => 'nnu', 'Oeu002772.1' => 'oeu', 'Oeu034557.1' => 'oeu', 'Oeu037597.1' => 'oeu', 'Oeu041430.1' => 'oeu', 'Oeu044497.1' => 'oeu', 'Oeu049350.2' => 'oeu', 'Oeu057088.1' => 'oeu', 'Os03g0133900' => 'osa', 'Os03g0185000' => 'osa', 'Os03g0196600' => 'osa', 'Os05g0533500' => 'osa', 'Peaxi162Scf00079g00143' => 'pax', 'Peaxi162Scf00285g00073' => 'pax', 'Peaxi162Scf00498g00131' => 'pax', 'Peaxi162Scf00515g00045' => 'pax', 'Peaxi162Scf01183g00139' => 'pax', 'PGR031G1944' => 'pgr', 'PGR083G1606' => 'pgr', 'PGR102G2788' => 'pgr', 'PGR142G2479' => 'pgr', 'PGSC0003DMG400000282' => 'stu', 'PGSC0003DMG400001573' => 'stu', 'PGSC0003DMG400014379' => 'stu', 'PGSC0003DMG400022181' => 'stu', 'Phvul.001G170600' => 'pvu', 'Phvul.002G114700' => 'pvu', 'Phvul.003G269000' => 'pvu', 'Phvul.006G055200' => 'pvu', 'Phvul.008G277800' => 'pvu', 'Phvul.010G110600' => 'pvu', 'Potri.001G365500' => 'ptr', 'Potri.005G099700' => 'ptr', 'Potri.011G068001' => 'ptr', 'Potri.013G109500' => 'ptr', 'Potri.015G147000' => 'ptr', 'Pp3c20_3500' => 'ppa', 'Pp3c23_17150' => 'ppa', 'Pp3c23_21600' => 'ppa', 'Pp3c24_14040' => 'ppa', 'Pp3c8_18470' => 'ppa', 'PRCOL_00000029' => 'pco', 'PRCOL_00002113' => 'pco', 'PRCOL_00002366' => 'pco', 'Prupe.4G239400' => 'ppe', 'Prupe.4G239500' => 'ppe', 'Prupe.7G179500' => 'ppe', 'Prupe.7G212700' => 'ppe', 'Psat2g008240' => 'psa', 'Psat2g008280' => 'psa', 'Psat2g008320' => 'psa', 'Psat2g129920' => 'psa', 'Psat4g158520' => 'psa', 'Psat5g173800' => 'psa', 'Psat7g256840' => 'psa', 'PSO063G0739' => 'pso', 'PSO063G2203' => 'pso', 'PSO063G5440' => 'pso', 'PSO170G5797' => 'pso', 'PSO541G0062' => 'pso', 'PSO541G3229' => 'pso', 'PSO675G0721' => 'pso', 'PSO675G9329' => 'pso', 'PSO832G0250' => 'pso', 'PSO832G2046' => 'pso', 'PSO832G4406' => 'pso', 'QL02p063027' => 'qlo', 'QL05p068287' => 'qlo', 'QL05p068781' => 'qlo', 'QL06p052727' => 'qlo', 'QL06p053842' => 'qlo', 'QL08p004961' => 'qlo', 'RcHm_v2.0_Chr2g0093021' => 'rch', 'RcHm_v2.0_Chr2g0097471' => 'rch', 'RcHm_v2.0_Chr2g0097591' => 'rch', 'RcHm_v2.0_Chr5g0054471' => 'rch', 'Rhsim04G0014100' => 'rsi', 'Rhsim08G0232100' => 'rsi', 'Rhsim10G0198900' => 'rsi', 'Rhsim13G0142600' => 'rsi', 'Sabra05G0082400' => 'sbr', 'Sabra13G0094400' => 'sbr', 'Sabra15G0156000' => 'sbr', 'Sabra16G0239100' => 'sbr', 'SalBow6G3897' => 'sbo', 'SalBow8G0744' => 'sbo', 'SalBow8G0917' => 'sbo', 'Sc03g0011120' => 'sci', 'Sc07g0001310' => 'sci', 'Sc16g0007950' => 'sci', 'Sed0000282' => 'sed', 'Sed0002951' => 'sed', 'Sed0005975' => 'sed', 'Sed0015535' => 'sed', 'Sed0019186' => 'sed', 'SEGI_03940' => 'sgi', 'SEGI_11183' => 'sgi', 'SEGI_27318' => 'sgi', 'SEGI_39826' => 'sgi', 'SGA_v2.0_scaffold168G38538' => 'sas', 'SGA_v2.0_scaffold62G21593' => 'sas', 'SGA_v2.0_scaffold630G53289' => 'sas', 'SGA_v2.0_scaffold8G04394' => 'sas', 'SHI24909' => 'shi', 'SMO134G0076' => 'smo', 'SMO143G0050' => 'smo', 'SMO358G0382' => 'smo', 'Solyc02g082850.3' => 'sly', 'Solyc07g065340.1' => 'sly', 'Solyc10g006040.1' => 'sly', 'Solyc12g008780.2' => 'sly', 'Sopen02g027650' => 'spe', 'Sopen07g033540' => 'spe', 'Sopen10g002000' => 'spe', 'Sopen12g003710' => 'spe', 'Sp1g41530' => 'spa', 'Sp3g11280' => 'spa', 'Sp3g30970' => 'spa', 'Sp6g18510' => 'spa', 'Sp7g33410' => 'spa', 'TAR383G0004' => 'tar', 'TAR625G0710' => 'tar', 'TAR626G1619' => 'tar', 'TAR629G0660' => 'tar', 'TAR629G3524' => 'tar', 'THA.LOC104807433' => 'tha', 'THA.LOC104811741' => 'tha', 'THA.LOC104815701' => 'tha', 'THA.LOC104817749' => 'tha', 'THA.LOC104822738' => 'tha', 'Thecc.01G007200' => 'tca', 'Thecc.06G237500' => 'tca', 'Thecc.07G017000' => 'tca', 'Thecc.09G092300' => 'tca', 'Thhalv10012384m.g' => 'esa', 'Thhalv10014167m.g' => 'esa', 'Thhalv10020893m.g' => 'esa', 'Thhalv10022779m.g' => 'esa', 'Thhalv10025792m.g' => 'esa', 'TPR.G1097' => 'tpr', 'TPR.G25139' => 'tpr', 'TPR.G27357' => 'tpr', 'TPR.G8597' => 'tpr', 'TWI34G0677' => 'twi', 'TWI38G2328' => 'twi', 'TWI39G1095' => 'twi', 'TWI53G0535' => 'twi', 'TWI63G1380' => 'twi', 'TWI63G1837' => 'twi', 'TWI73G0347' => 'twi', 'unitig_62.g23296' => 'ugi', 'unitig_699.g19416' => 'ugi', 'unitig_85.g27347' => 'ugi', 'vmacro09660' => 'vma', 'vmacro09661' => 'vma', 'vmacro18815' => 'vma', 'vmacro20523' => 'vma', 'VMungo0251G1201' => 'vmu', 'VMungo0331G1032' => 'vmu', 'VMungo0540G0152' => 'vmu', 'VMungo0647G0913' => 'vmu', 'VMungo1215G1556' => 'vmu', 'VMungo1215G2799' => 'vmu', 'VMungo1383G0928' => 'vmu', 'Zm00001eb002740' => 'zma', 'Zm00001eb293180' => 'zma', 'Zm00001eb361640' => 'zma' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D001205', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001205' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D001205', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '518', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001205' ) ), 'genes' => array( 'A03p13200' => 'bna', 'A05p17220' => 'bna', 'A06p33740' => 'bna', 'A08p00160' => 'bna', 'A10p14100' => 'bna', 'Aa31LG10G240' => 'aar', 'Aa31LG3G12710' => 'aar', 'Aa31LG6G12600' => 'aar', 'Aa31LG8G14910' => 'aar', 'Aa31LG8G320' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3598' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2981' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5574' => 'aag', 'Actinidia05020' => 'ach', 'Actinidia05025' => 'ach', 'Actinidia17385' => 'ach', 'Actinidia21748' => 'ach', 'Ah.04g163990' => 'amhyb', 'Ah.06g181220' => 'amhyb', 'AL1G64070' => 'aly', 'AL3G24850' => 'aly', 'AL3G50600' => 'aly', 'AL7G15500' => 'aly', 'AL8G32600' => 'aly', 'Aqoxy2G02475' => 'aox', 'Aqoxy4G02246' => 'aox', 'Aqoxy6G01700' => 'aox', 'Aqoxy7G01252' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2DX304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82Q4AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97A83C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98EFWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AM8NHJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3L4BD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0DJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4CMZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA7XEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NTH9NT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAFX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN33QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF5NK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VS0KPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMD1K9' => 'arhy', 'AT1G55920' => 'ath', 'AT2G17640' => 'ath', 'AT3G13110' => 'ath', 'AT4G35640' => 'ath', 'AT5G56760' => 'ath', 'ATR0624G017' => 'atr', 'ATR0652G003' => 'atr', 'ATR0661G415' => 'atr', 'Atru.chr1.2329' => 'acertr', 'Atru.chr11.1489' => 'acertr', 'Atru.chr2.3663' => 'acertr', 'Atru.chr3.955' => 'acertr', 'Atru.chr3.966' => 'acertr', 'AUR62033777' => 'cqu', 'AUR62040649' => 'cqu', 'BcaB01g02639' => 'bca', 'BcaB01g04419' => 'bca', 'BcaB02g10790' => 'bca', 'BcaB03g12419' => 'bca', 'BcaB04g16927' => 'bca', 'BcaB06g25487' => 'bca', 'BcaB06g28992' => 'bca', 'BcaB07g33180' => 'bca', 'BcaB08g36060' => 'bca', 'BcaC01g02902' => 'bca', 'BcaC01g06446' => 'bca', 'BcaC02g11492' => 'bca', 'BcaC04g20055' => 'bca', 'BcaC05g29211' => 'bca', 'BcaC07g40590' => 'bca', 'BcaC08g43662' => 'bca', 'BcaC08g43664' => 'bca', 'BcaC08g44228' => 'bca', 'BolC3t13985H' => 'bol', 'BolC3t18118H' => 'bol', 'BolC3t21633H' => 'bol', 'BolC4t23052H' => 'bol', 'BolC6t36167H' => 'bol', 'BolC6t36830H' => 'bol', 'BolC9t57683H' => 'bol', 'BolC9t58999H' => 'bol', 'BraA03t10632Z' => 'bra', 'BraA05t20622Z' => 'bra', 'BraA06t26309Z' => 'bra', 'BraA08t32072Z' => 'bra', 'BraA10t43501Z' => 'bra', 'BraSC56t46392Z' => 'bra', 'C03p15470' => 'bna', 'C03p58570' => 'bna', 'C03p93350' => 'bna', 'C04p14780' => 'bna', 'C06p16300' => 'bna', 'C08p42160' => 'bna', 'C09p48330' => 'bna', 'C09p61610' => 'bna', 'CAN.G1055.2' => 'can', 'CAN.G123.3' => 'can', 'CAN.G1241.17' => 'can', 'CAN.G337.20' => 'can', 'CAN.G469.4' => 'can', 'CAN.G492.30' => 'can', 'CAN.G553.20' => 'can', 'CAN.G626.20' => 'can', 'CAN.G890.75' => 'can', 'CANSAT11G1841' => 'cansat', 'CANSAT25G0563' => 'cansat', 'CANSAT56G1177' => 'cansat', 'CANSAT56G1842' => 'cansat', 'CANSAT56G4457' => 'cansat', 'CARHR045640' => 'chi', 'CARHR087700' => 'chi', 'CARHR107840' => 'chi', 'CARHR243970' => 'chi', 'CARHR270510' => 'chi', 'Carub.0001s4430' => 'cru', 'Carub.0001s4452' => 'cru', 'Carub.0003s1245' => 'cru', 'Carub.0003s3172' => 'cru', 'Carub.0007s0466' => 'cru', 'Carub.0008s1724' => 'cru', 'Ca_06385_v3' => 'car', 'Ca_20178_v3' => 'car', 'Ca_23588_v3' => 'car', 'Ca_24962_v3' => 'car', 'Ca_29966_v3' => 'car', 'CBR_g22982' => 'cbr', 'CBR_g26147' => 'cbr', 'CBR_g32072' => 'cbr', 'CBR_g41302' => 'cbr', 'CBR_g46439' => 'cbr', 'Cc04_g02110' => 'ccan', 'Cc05_g14780' => 'ccan', 'Cc06_g11160' => 'ccan', 'Cc07_g11640' => 'ccan', 'CDE04G1452' => 'cde', 'CDE04G2926' => 'cde', 'CDE05G0521' => 'cde', 'CDE05G0623' => 'cde', 'CDE05G0661' => 'cde', 'CDE07G1605' => 'cde', 'Cfa000059' => 'cfa', 'Cfa003100' => 'cfa', 'Cfa020216' => 'cfa', 'Cfa020217' => 'cfa', 'Ciclev10008523m.g' => 'ccl', 'Ciclev10009063m.g' => 'ccl', 'CiPaw.03G218100' => 'cil', 'CiPaw.07G004200' => 'cil', 'CiPaw.09G106600' => 'cil', 'CiPaw.11G202100' => 'cil', 'ClCG01G020830' => 'cla', 'ClCG09G021050' => 'cla', 'COL.COLO4_02647' => 'col', 'COL.COLO4_09804' => 'col', 'COL.COLO4_18223' => 'col', 'COL.COLO4_18224' => 'col', 'COL.COLO4_22536' => 'col', 'Cpa.g.sc12.177' => 'cpa', 'Cpa.g.sc27.251' => 'cpa', 'Cpa.g.sc55.185' => 'cpa', 'Cre10.g466750' => 'cre', 'Cre17.g713850' => 'cre', 'CsaV3_2G017890' => 'csa', 'CsaV3_6G047800' => 'csa', 'CsaV3_7G018620' => 'csa', 'CSS0003072' => 'camsi', 'CSS0009537' => 'camsi', 'CSS0009950' => 'camsi', 'CSS0013877' => 'camsi', 'CSS0023998' => 'camsi', 'CSS0026018' => 'camsi', 'CSS0026852' => 'camsi', 'CSS0029099' => 'camsi', 'CSS0043861' => 'camsi', 'CSS0044287' => 'camsi', 'CSS0044826' => 'camsi', 'DCAR_013222' => 'dca', 'DCAR_017087' => 'dca', 'DCAR_032248' => 'dca', 'Dinv04406' => 'din', 'Dinv04557' => 'din', 'Dinv30392' => 'din', 'Dinv36749' => 'din', 'Dinv40172' => 'din', 'Dinv42298' => 'din', 'Duzib147G1388' => 'dzi', 'Duzib168G0024' => 'dzi', 'Duzib213G0174' => 'dzi', 'ECA232G3761' => 'eca', 'ECA234G2581' => 'eca', 'ECA236G0418' => 'eca', 'ECA238G2872' => 'eca', 'ECA240G3456' => 'eca', 'ECA246G3133' => 'eca', 'EL10Ac4g07608' => 'bvu', 'EL10Ac4g08421' => 'bvu', 'EL10Ac4g08422' => 'bvu', 'Eucgr.C00914' => 'egr', 'Eucgr.F03698' => 'egr', 'Eucgr.J02527' => 'egr', 'FAN11G1246' => 'fan', 'FAN16G1863' => 'fan', 'FAN19G0124' => 'fan', 'FAN19G1834' => 'fan', 'FAN21G1318' => 'fan', 'FAN23G3039' => 'fan', 'FAN26G1224' => 'fan', 'FAN26G2695' => 'fan', 'FAN26G3274' => 'fan', 'FAN28G0616' => 'fan', 'FAN28G1918' => 'fan', 'FvH4_1g07140' => 'fve', 'FvH4_1g10540' => 'fve', 'FvH4_3g29510' => 'fve', 'Glyma.01G160000' => 'gma', 'Glyma.02G042000' => 'gma', 'Glyma.02G299100' => 'gma', 'Glyma.07G058800' => 'gma', 'Glyma.08G327400' => 'gma', 'Glyma.11G084100' => 'gma', 'Glyma.14G014700' => 'gma', 'Glyma.16G027700' => 'gma', 'Glyma.16G118800' => 'gma', 'Glyma.18G080000' => 'gma', 'Gohir.A01G089900' => 'ghi', 'Gohir.A02G177000' => 'ghi', 'Gohir.A13G134101' => 'ghi', 'Gohir.A13G193700' => 'ghi', 'Gohir.D01G075200' => 'ghi', 'Gohir.D03G002900' => 'ghi', 'Gohir.D13G137600' => 'ghi', 'Gohir.D13G199500' => 'ghi', 'Gorai.002G098400' => 'gra', 'Gorai.003G003100' => 'gra', 'Gorai.013G154200' => 'gra', 'Gorai.013G228200' => 'gra', 'GSVIVG01003478001' => 'vvi', 'GSVIVG01003838001' => 'vvi', 'GSVIVG01014639001' => 'vvi', 'GSVIVG01015228001' => 'vvi', 'HanXRQChr03g0077731' => 'han', 'HanXRQChr04g0112571' => 'han', 'HanXRQChr04g0119361' => 'han', 'HanXRQChr05g0149311' => 'han', 'HanXRQChr09g0276371' => 'han', 'HanXRQChr11g0324721' => 'han', 'HanXRQChr11g0333431' => 'han', 'HanXRQChr12g0354721' => 'han', 'HanXRQChr14g0431241' => 'han', 'HanXRQChr14g0442381' => 'han', 'Haze_03676' => 'cav', 'Haze_06992' => 'cav', 'Haze_09801' => 'cav', 'Haze_09802' => 'cav', 'Haze_25900' => 'cav', 'Haze_27653' => 'cav', 'Hma1.2p1_0036F.1_g022660' => 'hma', 'Hma1.2p1_0388F.1_g142210' => 'hma', 'Hma1.2p1_0657F.1_g196890' => 'hma', 'Hma1.2p1_0663F.1_g198760' => 'hma', 'Hma1.2p1_0663F.1_g198900' => 'hma', 'Hma1.2p1_0800F.1_g219950' => 'hma', 'Hma1.2p1_0800F.1_g219960' => 'hma', 'Hma1.2p1_2491F.1_g323230' => 'hma', 'HPP92_005550' => 'vpl', 'HPP92_020398' => 'vpl', 'HPP92_022693' => 'vpl', 'HPP92_022695' => 'vpl', 'HPP92_024891' => 'vpl', 'Hund03616' => 'sun', 'Hund10417' => 'sun', 'Lalb_Chr05g0211931' => 'lal', 'Lalb_Chr10g0100221' => 'lal', 'Lalb_Chr10g0107381' => 'lal', 'Lalb_Chr15g0081981' => 'lal', 'Lalb_Chr17g0342301' => 'lal', 'Lalb_Chr17g0348881' => 'lal', 'Lalb_Chr20g0113991' => 'lal', 'Lj1C888T3' => 'lonja', 'Lj1C888T4' => 'lonja', 'Lj2g0003640' => 'lja', 'Lj2P259T13' => 'lonja', 'Lj3g0022427' => 'lja', 'Lj4A232T48' => 'lonja', 'Lj4C309G3' => 'lonja', 'Lj5A47T39' => 'lonja', 'Lj6g0007553' => 'lja', 'Lj8P177T19' => 'lonja', 'LjContig00081g0010826' => 'lja', 'Lsat_1_v5_gn_2_74441' => 'lsa', 'Lsat_1_v5_gn_4_95580' => 'lsa', 'Lsat_1_v5_gn_5_145700' => 'lsa', 'Lsat_1_v5_gn_7_113221' => 'lsa', 'Lsat_1_v5_gn_9_21861' => 'lsa', 'Lsat_1_v5_gn_9_90540' => 'lsa', 'Manes.02G112600' => 'mes', 'Manes.03G031800' => 'mes', 'Manes.03G139860' => 'mes', 'Manes.15G062000' => 'mes', 'Mapoly0010s0095' => 'mpo', 'Mapoly0029s0059' => 'mpo', 'Mapoly0076s0098' => 'mpo', 'MBI08_g24262_MAGBIO' => 'mbi', 'MBI08_g24263_MAGBIO' => 'mbi', 'MBI19_g42006_MAGBIO' => 'mbi', 'MBI19_g44081_MAGBIO' => 'mbi', 'MBI19_g45745_MAGBIO' => 'mbi', 'MCO02G080' => 'mco', 'MCO05G462' => 'mco', 'MCO15G451' => 'mco', 'MD02G1075400' => 'mdo', 'MD02G1075800' => 'mdo', 'MD02G1119500' => 'mdo', 'MD02G1119600' => 'mdo', 'MD02G1238300' => 'mdo', 'MD03G1187100' => 'mdo', 'MD11G1202100' => 'mdo', 'MD15G1233400' => 'mdo', 'Medtr3g058410' => 'mtr', 'Medtr5g023760' => 'mtr', 'Medtr5g095470' => 'mtr', 'Medtr8g028040' => 'mtr', 'MELO3C003551.2' => 'cme', 'MELO3C007969.2' => 'cme', 'MELO3C023285.2' => 'cme', 'MELO3C024900.2' => 'cme', 'Migut.H01771' => 'egut', 'Migut.J00592' => 'egut', 'Migut.K00586' => 'egut', 'Migut.M01431' => 'egut', 'Migut.M01667' => 'egut', 'MSTRG.10574' => 'ama', 'MSTRG.13014' => 'ama', 'MSTRG.15786' => 'ama', 'MSTRG.16042' => 'ama', 'MSTRG.19528' => 'ama', 'MSTRG.6989' => 'ama', 'Nitab4.5_0000461g0140' => 'nta', 'Nitab4.5_0000540g0230' => 'nta', 'Nitab4.5_0000702g0070' => 'nta', 'Nitab4.5_0002967g0050' => 'nta', 'Nitab4.5_0003491g0050' => 'nta', 'Nitab4.5_0006756g0030' => 'nta', 'Nitab4.5_0009088g0010' => 'nta', 'Nitab4.5_0010958g0010' => 'nta', 'Nitab4.5_0028970g0010' => 'nta', 'Nn1g03217' => 'nnu', 'Nn5g30958' => 'nnu', 'Nn6g35428' => 'nnu', 'Oeu002772.1' => 'oeu', 'Oeu034557.1' => 'oeu', 'Oeu037597.1' => 'oeu', 'Oeu041430.1' => 'oeu', 'Oeu044497.1' => 'oeu', 'Oeu049350.2' => 'oeu', 'Oeu057088.1' => 'oeu', 'Os03g0133900' => 'osa', 'Os03g0185000' => 'osa', 'Os03g0196600' => 'osa', 'Os05g0533500' => 'osa', 'Peaxi162Scf00079g00143' => 'pax', 'Peaxi162Scf00285g00073' => 'pax', 'Peaxi162Scf00498g00131' => 'pax', 'Peaxi162Scf00515g00045' => 'pax', 'Peaxi162Scf01183g00139' => 'pax', 'PGR031G1944' => 'pgr', 'PGR083G1606' => 'pgr', 'PGR102G2788' => 'pgr', 'PGR142G2479' => 'pgr', 'PGSC0003DMG400000282' => 'stu', 'PGSC0003DMG400001573' => 'stu', 'PGSC0003DMG400014379' => 'stu', 'PGSC0003DMG400022181' => 'stu', 'Phvul.001G170600' => 'pvu', 'Phvul.002G114700' => 'pvu', 'Phvul.003G269000' => 'pvu', 'Phvul.006G055200' => 'pvu', 'Phvul.008G277800' => 'pvu', 'Phvul.010G110600' => 'pvu', 'Potri.001G365500' => 'ptr', 'Potri.005G099700' => 'ptr', 'Potri.011G068001' => 'ptr', 'Potri.013G109500' => 'ptr', 'Potri.015G147000' => 'ptr', 'Pp3c20_3500' => 'ppa', 'Pp3c23_17150' => 'ppa', 'Pp3c23_21600' => 'ppa', 'Pp3c24_14040' => 'ppa', 'Pp3c8_18470' => 'ppa', 'PRCOL_00000029' => 'pco', 'PRCOL_00002113' => 'pco', 'PRCOL_00002366' => 'pco', 'Prupe.4G239400' => 'ppe', 'Prupe.4G239500' => 'ppe', 'Prupe.7G179500' => 'ppe', 'Prupe.7G212700' => 'ppe', 'Psat2g008240' => 'psa', 'Psat2g008280' => 'psa', 'Psat2g008320' => 'psa', 'Psat2g129920' => 'psa', 'Psat4g158520' => 'psa', 'Psat5g173800' => 'psa', 'Psat7g256840' => 'psa', 'PSO063G0739' => 'pso', 'PSO063G2203' => 'pso', 'PSO063G5440' => 'pso', 'PSO170G5797' => 'pso', 'PSO541G0062' => 'pso', 'PSO541G3229' => 'pso', 'PSO675G0721' => 'pso', 'PSO675G9329' => 'pso', 'PSO832G0250' => 'pso', 'PSO832G2046' => 'pso', 'PSO832G4406' => 'pso', 'QL02p063027' => 'qlo', 'QL05p068287' => 'qlo', 'QL05p068781' => 'qlo', 'QL06p052727' => 'qlo', 'QL06p053842' => 'qlo', 'QL08p004961' => 'qlo', 'RcHm_v2.0_Chr2g0093021' => 'rch', 'RcHm_v2.0_Chr2g0097471' => 'rch', 'RcHm_v2.0_Chr2g0097591' => 'rch', 'RcHm_v2.0_Chr5g0054471' => 'rch', 'Rhsim04G0014100' => 'rsi', 'Rhsim08G0232100' => 'rsi', 'Rhsim10G0198900' => 'rsi', 'Rhsim13G0142600' => 'rsi', 'Sabra05G0082400' => 'sbr', 'Sabra13G0094400' => 'sbr', 'Sabra15G0156000' => 'sbr', 'Sabra16G0239100' => 'sbr', 'SalBow6G3897' => 'sbo', 'SalBow8G0744' => 'sbo', 'SalBow8G0917' => 'sbo', 'Sc03g0011120' => 'sci', 'Sc07g0001310' => 'sci', 'Sc16g0007950' => 'sci', 'Sed0000282' => 'sed', 'Sed0002951' => 'sed', 'Sed0005975' => 'sed', 'Sed0015535' => 'sed', 'Sed0019186' => 'sed', 'SEGI_03940' => 'sgi', 'SEGI_11183' => 'sgi', 'SEGI_27318' => 'sgi', 'SEGI_39826' => 'sgi', 'SGA_v2.0_scaffold168G38538' => 'sas', 'SGA_v2.0_scaffold62G21593' => 'sas', 'SGA_v2.0_scaffold630G53289' => 'sas', 'SGA_v2.0_scaffold8G04394' => 'sas', 'SHI24909' => 'shi', 'SMO134G0076' => 'smo', 'SMO143G0050' => 'smo', 'SMO358G0382' => 'smo', 'Solyc02g082850.3' => 'sly', 'Solyc07g065340.1' => 'sly', 'Solyc10g006040.1' => 'sly', 'Solyc12g008780.2' => 'sly', 'Sopen02g027650' => 'spe', 'Sopen07g033540' => 'spe', 'Sopen10g002000' => 'spe', 'Sopen12g003710' => 'spe', 'Sp1g41530' => 'spa', 'Sp3g11280' => 'spa', 'Sp3g30970' => 'spa', 'Sp6g18510' => 'spa', 'Sp7g33410' => 'spa', 'TAR383G0004' => 'tar', 'TAR625G0710' => 'tar', 'TAR626G1619' => 'tar', 'TAR629G0660' => 'tar', 'TAR629G3524' => 'tar', 'THA.LOC104807433' => 'tha', 'THA.LOC104811741' => 'tha', 'THA.LOC104815701' => 'tha', 'THA.LOC104817749' => 'tha', 'THA.LOC104822738' => 'tha', 'Thecc.01G007200' => 'tca', 'Thecc.06G237500' => 'tca', 'Thecc.07G017000' => 'tca', 'Thecc.09G092300' => 'tca', 'Thhalv10012384m.g' => 'esa', 'Thhalv10014167m.g' => 'esa', 'Thhalv10020893m.g' => 'esa', 'Thhalv10022779m.g' => 'esa', 'Thhalv10025792m.g' => 'esa', 'TPR.G1097' => 'tpr', 'TPR.G25139' => 'tpr', 'TPR.G27357' => 'tpr', 'TPR.G8597' => 'tpr', 'TWI34G0677' => 'twi', 'TWI38G2328' => 'twi', 'TWI39G1095' => 'twi', 'TWI53G0535' => 'twi', 'TWI63G1380' => 'twi', 'TWI63G1837' => 'twi', 'TWI73G0347' => 'twi', 'unitig_62.g23296' => 'ugi', 'unitig_699.g19416' => 'ugi', 'unitig_85.g27347' => 'ugi', 'vmacro09660' => 'vma', 'vmacro09661' => 'vma', 'vmacro18815' => 'vma', 'vmacro20523' => 'vma', 'VMungo0251G1201' => 'vmu', 'VMungo0331G1032' => 'vmu', 'VMungo0540G0152' => 'vmu', 'VMungo0647G0913' => 'vmu', 'VMungo1215G1556' => 'vmu', 'VMungo1215G2799' => 'vmu', 'VMungo1383G0928' => 'vmu', 'Zm00001eb002740' => 'zma', 'Zm00001eb293180' => 'zma', 'Zm00001eb361640' => 'zma' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D001205' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001205' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D001205' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001205' )
include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151
Notice (8): Trying to access array offset on value of type null [APP/View/Tools/similarity_heatmap.ctp, line 77]Code Context <label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?> $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001205', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '518', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A03p13200' => 'bna', 'A05p17220' => 'bna', 'A06p33740' => 'bna', 'A08p00160' => 'bna', 'A10p14100' => 'bna', 'Aa31LG10G240' => 'aar', 'Aa31LG3G12710' => 'aar', 'Aa31LG6G12600' => 'aar', 'Aa31LG8G14910' => 'aar', 'Aa31LG8G320' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3598' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2981' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5574' => 'aag', 'Actinidia05020' => 'ach', 'Actinidia05025' => 'ach', 'Actinidia17385' => 'ach', 'Actinidia21748' => 'ach', 'Ah.04g163990' => 'amhyb', 'Ah.06g181220' => 'amhyb', 'AL1G64070' => 'aly', 'AL3G24850' => 'aly', 'AL3G50600' => 'aly', 'AL7G15500' => 'aly', 'AL8G32600' => 'aly', 'Aqoxy2G02475' => 'aox', 'Aqoxy4G02246' => 'aox', 'Aqoxy6G01700' => 'aox', 'Aqoxy7G01252' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2DX304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82Q4AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97A83C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98EFWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AM8NHJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3L4BD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0DJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4CMZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA7XEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NTH9NT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAFX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN33QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF5NK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VS0KPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMD1K9' => 'arhy', 'AT1G55920' => 'ath', 'AT2G17640' => 'ath', 'AT3G13110' => 'ath', 'AT4G35640' => 'ath', 'AT5G56760' => 'ath', 'ATR0624G017' => 'atr', 'ATR0652G003' => 'atr', 'ATR0661G415' => 'atr', 'Atru.chr1.2329' => 'acertr', 'Atru.chr11.1489' => 'acertr', 'Atru.chr2.3663' => 'acertr', 'Atru.chr3.955' => 'acertr', 'Atru.chr3.966' => 'acertr', 'AUR62033777' => 'cqu', 'AUR62040649' => 'cqu', 'BcaB01g02639' => 'bca', 'BcaB01g04419' => 'bca', 'BcaB02g10790' => 'bca', 'BcaB03g12419' => 'bca', 'BcaB04g16927' => 'bca', 'BcaB06g25487' => 'bca', 'BcaB06g28992' => 'bca', 'BcaB07g33180' => 'bca', 'BcaB08g36060' => 'bca', 'BcaC01g02902' => 'bca', 'BcaC01g06446' => 'bca', 'BcaC02g11492' => 'bca', 'BcaC04g20055' => 'bca', 'BcaC05g29211' => 'bca', 'BcaC07g40590' => 'bca', 'BcaC08g43662' => 'bca', 'BcaC08g43664' => 'bca', 'BcaC08g44228' => 'bca', 'BolC3t13985H' => 'bol', 'BolC3t18118H' => 'bol', 'BolC3t21633H' => 'bol', 'BolC4t23052H' => 'bol', 'BolC6t36167H' => 'bol', 'BolC6t36830H' => 'bol', 'BolC9t57683H' => 'bol', 'BolC9t58999H' => 'bol', 'BraA03t10632Z' => 'bra', 'BraA05t20622Z' => 'bra', 'BraA06t26309Z' => 'bra', 'BraA08t32072Z' => 'bra', 'BraA10t43501Z' => 'bra', 'BraSC56t46392Z' => 'bra', 'C03p15470' => 'bna', 'C03p58570' => 'bna', 'C03p93350' => 'bna', 'C04p14780' => 'bna', 'C06p16300' => 'bna', 'C08p42160' => 'bna', 'C09p48330' => 'bna', 'C09p61610' => 'bna', 'CAN.G1055.2' => 'can', 'CAN.G123.3' => 'can', 'CAN.G1241.17' => 'can', 'CAN.G337.20' => 'can', 'CAN.G469.4' => 'can', 'CAN.G492.30' => 'can', 'CAN.G553.20' => 'can', 'CAN.G626.20' => 'can', 'CAN.G890.75' => 'can', 'CANSAT11G1841' => 'cansat', 'CANSAT25G0563' => 'cansat', 'CANSAT56G1177' => 'cansat', 'CANSAT56G1842' => 'cansat', 'CANSAT56G4457' => 'cansat', 'CARHR045640' => 'chi', 'CARHR087700' => 'chi', 'CARHR107840' => 'chi', 'CARHR243970' => 'chi', 'CARHR270510' => 'chi', 'Carub.0001s4430' => 'cru', 'Carub.0001s4452' => 'cru', 'Carub.0003s1245' => 'cru', 'Carub.0003s3172' => 'cru', 'Carub.0007s0466' => 'cru', 'Carub.0008s1724' => 'cru', 'Ca_06385_v3' => 'car', 'Ca_20178_v3' => 'car', 'Ca_23588_v3' => 'car', 'Ca_24962_v3' => 'car', 'Ca_29966_v3' => 'car', 'CBR_g22982' => 'cbr', 'CBR_g26147' => 'cbr', 'CBR_g32072' => 'cbr', 'CBR_g41302' => 'cbr', 'CBR_g46439' => 'cbr', 'Cc04_g02110' => 'ccan', 'Cc05_g14780' => 'ccan', 'Cc06_g11160' => 'ccan', 'Cc07_g11640' => 'ccan', 'CDE04G1452' => 'cde', 'CDE04G2926' => 'cde', 'CDE05G0521' => 'cde', 'CDE05G0623' => 'cde', 'CDE05G0661' => 'cde', 'CDE07G1605' => 'cde', 'Cfa000059' => 'cfa', 'Cfa003100' => 'cfa', 'Cfa020216' => 'cfa', 'Cfa020217' => 'cfa', 'Ciclev10008523m.g' => 'ccl', 'Ciclev10009063m.g' => 'ccl', 'CiPaw.03G218100' => 'cil', 'CiPaw.07G004200' => 'cil', 'CiPaw.09G106600' => 'cil', 'CiPaw.11G202100' => 'cil', 'ClCG01G020830' => 'cla', 'ClCG09G021050' => 'cla', 'COL.COLO4_02647' => 'col', 'COL.COLO4_09804' => 'col', 'COL.COLO4_18223' => 'col', 'COL.COLO4_18224' => 'col', 'COL.COLO4_22536' => 'col', 'Cpa.g.sc12.177' => 'cpa', 'Cpa.g.sc27.251' => 'cpa', 'Cpa.g.sc55.185' => 'cpa', 'Cre10.g466750' => 'cre', 'Cre17.g713850' => 'cre', 'CsaV3_2G017890' => 'csa', 'CsaV3_6G047800' => 'csa', 'CsaV3_7G018620' => 'csa', 'CSS0003072' => 'camsi', 'CSS0009537' => 'camsi', 'CSS0009950' => 'camsi', 'CSS0013877' => 'camsi', 'CSS0023998' => 'camsi', 'CSS0026018' => 'camsi', 'CSS0026852' => 'camsi', 'CSS0029099' => 'camsi', 'CSS0043861' => 'camsi', 'CSS0044287' => 'camsi', 'CSS0044826' => 'camsi', 'DCAR_013222' => 'dca', 'DCAR_017087' => 'dca', 'DCAR_032248' => 'dca', 'Dinv04406' => 'din', 'Dinv04557' => 'din', 'Dinv30392' => 'din', 'Dinv36749' => 'din', 'Dinv40172' => 'din', 'Dinv42298' => 'din', 'Duzib147G1388' => 'dzi', 'Duzib168G0024' => 'dzi', 'Duzib213G0174' => 'dzi', 'ECA232G3761' => 'eca', 'ECA234G2581' => 'eca', 'ECA236G0418' => 'eca', 'ECA238G2872' => 'eca', 'ECA240G3456' => 'eca', 'ECA246G3133' => 'eca', 'EL10Ac4g07608' => 'bvu', 'EL10Ac4g08421' => 'bvu', 'EL10Ac4g08422' => 'bvu', 'Eucgr.C00914' => 'egr', 'Eucgr.F03698' => 'egr', 'Eucgr.J02527' => 'egr', 'FAN11G1246' => 'fan', 'FAN16G1863' => 'fan', 'FAN19G0124' => 'fan', 'FAN19G1834' => 'fan', 'FAN21G1318' => 'fan', 'FAN23G3039' => 'fan', 'FAN26G1224' => 'fan', 'FAN26G2695' => 'fan', 'FAN26G3274' => 'fan', 'FAN28G0616' => 'fan', 'FAN28G1918' => 'fan', 'FvH4_1g07140' => 'fve', 'FvH4_1g10540' => 'fve', 'FvH4_3g29510' => 'fve', 'Glyma.01G160000' => 'gma', 'Glyma.02G042000' => 'gma', 'Glyma.02G299100' => 'gma', 'Glyma.07G058800' => 'gma', 'Glyma.08G327400' => 'gma', 'Glyma.11G084100' => 'gma', 'Glyma.14G014700' => 'gma', 'Glyma.16G027700' => 'gma', 'Glyma.16G118800' => 'gma', 'Glyma.18G080000' => 'gma', 'Gohir.A01G089900' => 'ghi', 'Gohir.A02G177000' => 'ghi', 'Gohir.A13G134101' => 'ghi', 'Gohir.A13G193700' => 'ghi', 'Gohir.D01G075200' => 'ghi', 'Gohir.D03G002900' => 'ghi', 'Gohir.D13G137600' => 'ghi', 'Gohir.D13G199500' => 'ghi', 'Gorai.002G098400' => 'gra', 'Gorai.003G003100' => 'gra', 'Gorai.013G154200' => 'gra', 'Gorai.013G228200' => 'gra', 'GSVIVG01003478001' => 'vvi', 'GSVIVG01003838001' => 'vvi', 'GSVIVG01014639001' => 'vvi', 'GSVIVG01015228001' => 'vvi', 'HanXRQChr03g0077731' => 'han', 'HanXRQChr04g0112571' => 'han', 'HanXRQChr04g0119361' => 'han', 'HanXRQChr05g0149311' => 'han', 'HanXRQChr09g0276371' => 'han', 'HanXRQChr11g0324721' => 'han', 'HanXRQChr11g0333431' => 'han', 'HanXRQChr12g0354721' => 'han', 'HanXRQChr14g0431241' => 'han', 'HanXRQChr14g0442381' => 'han', 'Haze_03676' => 'cav', 'Haze_06992' => 'cav', 'Haze_09801' => 'cav', 'Haze_09802' => 'cav', 'Haze_25900' => 'cav', 'Haze_27653' => 'cav', 'Hma1.2p1_0036F.1_g022660' => 'hma', 'Hma1.2p1_0388F.1_g142210' => 'hma', 'Hma1.2p1_0657F.1_g196890' => 'hma', 'Hma1.2p1_0663F.1_g198760' => 'hma', 'Hma1.2p1_0663F.1_g198900' => 'hma', 'Hma1.2p1_0800F.1_g219950' => 'hma', 'Hma1.2p1_0800F.1_g219960' => 'hma', 'Hma1.2p1_2491F.1_g323230' => 'hma', 'HPP92_005550' => 'vpl', 'HPP92_020398' => 'vpl', 'HPP92_022693' => 'vpl', 'HPP92_022695' => 'vpl', 'HPP92_024891' => 'vpl', 'Hund03616' => 'sun', 'Hund10417' => 'sun', 'Lalb_Chr05g0211931' => 'lal', 'Lalb_Chr10g0100221' => 'lal', 'Lalb_Chr10g0107381' => 'lal', 'Lalb_Chr15g0081981' => 'lal', 'Lalb_Chr17g0342301' => 'lal', 'Lalb_Chr17g0348881' => 'lal', 'Lalb_Chr20g0113991' => 'lal', 'Lj1C888T3' => 'lonja', 'Lj1C888T4' => 'lonja', 'Lj2g0003640' => 'lja', 'Lj2P259T13' => 'lonja', 'Lj3g0022427' => 'lja', 'Lj4A232T48' => 'lonja', 'Lj4C309G3' => 'lonja', 'Lj5A47T39' => 'lonja', 'Lj6g0007553' => 'lja', 'Lj8P177T19' => 'lonja', 'LjContig00081g0010826' => 'lja', 'Lsat_1_v5_gn_2_74441' => 'lsa', 'Lsat_1_v5_gn_4_95580' => 'lsa', 'Lsat_1_v5_gn_5_145700' => 'lsa', 'Lsat_1_v5_gn_7_113221' => 'lsa', 'Lsat_1_v5_gn_9_21861' => 'lsa', 'Lsat_1_v5_gn_9_90540' => 'lsa', 'Manes.02G112600' => 'mes', 'Manes.03G031800' => 'mes', 'Manes.03G139860' => 'mes', 'Manes.15G062000' => 'mes', 'Mapoly0010s0095' => 'mpo', 'Mapoly0029s0059' => 'mpo', 'Mapoly0076s0098' => 'mpo', 'MBI08_g24262_MAGBIO' => 'mbi', 'MBI08_g24263_MAGBIO' => 'mbi', 'MBI19_g42006_MAGBIO' => 'mbi', 'MBI19_g44081_MAGBIO' => 'mbi', 'MBI19_g45745_MAGBIO' => 'mbi', 'MCO02G080' => 'mco', 'MCO05G462' => 'mco', 'MCO15G451' => 'mco', 'MD02G1075400' => 'mdo', 'MD02G1075800' => 'mdo', 'MD02G1119500' => 'mdo', 'MD02G1119600' => 'mdo', 'MD02G1238300' => 'mdo', 'MD03G1187100' => 'mdo', 'MD11G1202100' => 'mdo', 'MD15G1233400' => 'mdo', 'Medtr3g058410' => 'mtr', 'Medtr5g023760' => 'mtr', 'Medtr5g095470' => 'mtr', 'Medtr8g028040' => 'mtr', 'MELO3C003551.2' => 'cme', 'MELO3C007969.2' => 'cme', 'MELO3C023285.2' => 'cme', 'MELO3C024900.2' => 'cme', 'Migut.H01771' => 'egut', 'Migut.J00592' => 'egut', 'Migut.K00586' => 'egut', 'Migut.M01431' => 'egut', 'Migut.M01667' => 'egut', 'MSTRG.10574' => 'ama', 'MSTRG.13014' => 'ama', 'MSTRG.15786' => 'ama', 'MSTRG.16042' => 'ama', 'MSTRG.19528' => 'ama', 'MSTRG.6989' => 'ama', 'Nitab4.5_0000461g0140' => 'nta', 'Nitab4.5_0000540g0230' => 'nta', 'Nitab4.5_0000702g0070' => 'nta', 'Nitab4.5_0002967g0050' => 'nta', 'Nitab4.5_0003491g0050' => 'nta', 'Nitab4.5_0006756g0030' => 'nta', 'Nitab4.5_0009088g0010' => 'nta', 'Nitab4.5_0010958g0010' => 'nta', 'Nitab4.5_0028970g0010' => 'nta', 'Nn1g03217' => 'nnu', 'Nn5g30958' => 'nnu', 'Nn6g35428' => 'nnu', 'Oeu002772.1' => 'oeu', 'Oeu034557.1' => 'oeu', 'Oeu037597.1' => 'oeu', 'Oeu041430.1' => 'oeu', 'Oeu044497.1' => 'oeu', 'Oeu049350.2' => 'oeu', 'Oeu057088.1' => 'oeu', 'Os03g0133900' => 'osa', 'Os03g0185000' => 'osa', 'Os03g0196600' => 'osa', 'Os05g0533500' => 'osa', 'Peaxi162Scf00079g00143' => 'pax', 'Peaxi162Scf00285g00073' => 'pax', 'Peaxi162Scf00498g00131' => 'pax', 'Peaxi162Scf00515g00045' => 'pax', 'Peaxi162Scf01183g00139' => 'pax', 'PGR031G1944' => 'pgr', 'PGR083G1606' => 'pgr', 'PGR102G2788' => 'pgr', 'PGR142G2479' => 'pgr', 'PGSC0003DMG400000282' => 'stu', 'PGSC0003DMG400001573' => 'stu', 'PGSC0003DMG400014379' => 'stu', 'PGSC0003DMG400022181' => 'stu', 'Phvul.001G170600' => 'pvu', 'Phvul.002G114700' => 'pvu', 'Phvul.003G269000' => 'pvu', 'Phvul.006G055200' => 'pvu', 'Phvul.008G277800' => 'pvu', 'Phvul.010G110600' => 'pvu', 'Potri.001G365500' => 'ptr', 'Potri.005G099700' => 'ptr', 'Potri.011G068001' => 'ptr', 'Potri.013G109500' => 'ptr', 'Potri.015G147000' => 'ptr', 'Pp3c20_3500' => 'ppa', 'Pp3c23_17150' => 'ppa', 'Pp3c23_21600' => 'ppa', 'Pp3c24_14040' => 'ppa', 'Pp3c8_18470' => 'ppa', 'PRCOL_00000029' => 'pco', 'PRCOL_00002113' => 'pco', 'PRCOL_00002366' => 'pco', 'Prupe.4G239400' => 'ppe', 'Prupe.4G239500' => 'ppe', 'Prupe.7G179500' => 'ppe', 'Prupe.7G212700' => 'ppe', 'Psat2g008240' => 'psa', 'Psat2g008280' => 'psa', 'Psat2g008320' => 'psa', 'Psat2g129920' => 'psa', 'Psat4g158520' => 'psa', 'Psat5g173800' => 'psa', 'Psat7g256840' => 'psa', 'PSO063G0739' => 'pso', 'PSO063G2203' => 'pso', 'PSO063G5440' => 'pso', 'PSO170G5797' => 'pso', 'PSO541G0062' => 'pso', 'PSO541G3229' => 'pso', 'PSO675G0721' => 'pso', 'PSO675G9329' => 'pso', 'PSO832G0250' => 'pso', 'PSO832G2046' => 'pso', 'PSO832G4406' => 'pso', 'QL02p063027' => 'qlo', 'QL05p068287' => 'qlo', 'QL05p068781' => 'qlo', 'QL06p052727' => 'qlo', 'QL06p053842' => 'qlo', 'QL08p004961' => 'qlo', 'RcHm_v2.0_Chr2g0093021' => 'rch', 'RcHm_v2.0_Chr2g0097471' => 'rch', 'RcHm_v2.0_Chr2g0097591' => 'rch', 'RcHm_v2.0_Chr5g0054471' => 'rch', 'Rhsim04G0014100' => 'rsi', 'Rhsim08G0232100' => 'rsi', 'Rhsim10G0198900' => 'rsi', 'Rhsim13G0142600' => 'rsi', 'Sabra05G0082400' => 'sbr', 'Sabra13G0094400' => 'sbr', 'Sabra15G0156000' => 'sbr', 'Sabra16G0239100' => 'sbr', 'SalBow6G3897' => 'sbo', 'SalBow8G0744' => 'sbo', 'SalBow8G0917' => 'sbo', 'Sc03g0011120' => 'sci', 'Sc07g0001310' => 'sci', 'Sc16g0007950' => 'sci', 'Sed0000282' => 'sed', 'Sed0002951' => 'sed', 'Sed0005975' => 'sed', 'Sed0015535' => 'sed', 'Sed0019186' => 'sed', 'SEGI_03940' => 'sgi', 'SEGI_11183' => 'sgi', 'SEGI_27318' => 'sgi', 'SEGI_39826' => 'sgi', 'SGA_v2.0_scaffold168G38538' => 'sas', 'SGA_v2.0_scaffold62G21593' => 'sas', 'SGA_v2.0_scaffold630G53289' => 'sas', 'SGA_v2.0_scaffold8G04394' => 'sas', 'SHI24909' => 'shi', 'SMO134G0076' => 'smo', 'SMO143G0050' => 'smo', 'SMO358G0382' => 'smo', 'Solyc02g082850.3' => 'sly', 'Solyc07g065340.1' => 'sly', 'Solyc10g006040.1' => 'sly', 'Solyc12g008780.2' => 'sly', 'Sopen02g027650' => 'spe', 'Sopen07g033540' => 'spe', 'Sopen10g002000' => 'spe', 'Sopen12g003710' => 'spe', 'Sp1g41530' => 'spa', 'Sp3g11280' => 'spa', 'Sp3g30970' => 'spa', 'Sp6g18510' => 'spa', 'Sp7g33410' => 'spa', 'TAR383G0004' => 'tar', 'TAR625G0710' => 'tar', 'TAR626G1619' => 'tar', 'TAR629G0660' => 'tar', 'TAR629G3524' => 'tar', 'THA.LOC104807433' => 'tha', 'THA.LOC104811741' => 'tha', 'THA.LOC104815701' => 'tha', 'THA.LOC104817749' => 'tha', 'THA.LOC104822738' => 'tha', 'Thecc.01G007200' => 'tca', 'Thecc.06G237500' => 'tca', 'Thecc.07G017000' => 'tca', 'Thecc.09G092300' => 'tca', 'Thhalv10012384m.g' => 'esa', 'Thhalv10014167m.g' => 'esa', 'Thhalv10020893m.g' => 'esa', 'Thhalv10022779m.g' => 'esa', 'Thhalv10025792m.g' => 'esa', 'TPR.G1097' => 'tpr', 'TPR.G25139' => 'tpr', 'TPR.G27357' => 'tpr', 'TPR.G8597' => 'tpr', 'TWI34G0677' => 'twi', 'TWI38G2328' => 'twi', 'TWI39G1095' => 'twi', 'TWI53G0535' => 'twi', 'TWI63G1380' => 'twi', 'TWI63G1837' => 'twi', 'TWI73G0347' => 'twi', 'unitig_62.g23296' => 'ugi', 'unitig_699.g19416' => 'ugi', 'unitig_85.g27347' => 'ugi', 'vmacro09660' => 'vma', 'vmacro09661' => 'vma', 'vmacro18815' => 'vma', 'vmacro20523' => 'vma', 'VMungo0251G1201' => 'vmu', 'VMungo0331G1032' => 'vmu', 'VMungo0540G0152' => 'vmu', 'VMungo0647G0913' => 'vmu', 'VMungo1215G1556' => 'vmu', 'VMungo1215G2799' => 'vmu', 'VMungo1383G0928' => 'vmu', 'Zm00001eb002740' => 'zma', 'Zm00001eb293180' => 'zma', 'Zm00001eb361640' => 'zma' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D001205', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001205' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D001205', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '518', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001205' ) ), 'genes' => array( 'A03p13200' => 'bna', 'A05p17220' => 'bna', 'A06p33740' => 'bna', 'A08p00160' => 'bna', 'A10p14100' => 'bna', 'Aa31LG10G240' => 'aar', 'Aa31LG3G12710' => 'aar', 'Aa31LG6G12600' => 'aar', 'Aa31LG8G14910' => 'aar', 'Aa31LG8G320' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3598' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2981' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5574' => 'aag', 'Actinidia05020' => 'ach', 'Actinidia05025' => 'ach', 'Actinidia17385' => 'ach', 'Actinidia21748' => 'ach', 'Ah.04g163990' => 'amhyb', 'Ah.06g181220' => 'amhyb', 'AL1G64070' => 'aly', 'AL3G24850' => 'aly', 'AL3G50600' => 'aly', 'AL7G15500' => 'aly', 'AL8G32600' => 'aly', 'Aqoxy2G02475' => 'aox', 'Aqoxy4G02246' => 'aox', 'Aqoxy6G01700' => 'aox', 'Aqoxy7G01252' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2DX304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82Q4AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97A83C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98EFWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AM8NHJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3L4BD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0DJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4CMZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA7XEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NTH9NT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAFX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN33QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF5NK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VS0KPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMD1K9' => 'arhy', 'AT1G55920' => 'ath', 'AT2G17640' => 'ath', 'AT3G13110' => 'ath', 'AT4G35640' => 'ath', 'AT5G56760' => 'ath', 'ATR0624G017' => 'atr', 'ATR0652G003' => 'atr', 'ATR0661G415' => 'atr', 'Atru.chr1.2329' => 'acertr', 'Atru.chr11.1489' => 'acertr', 'Atru.chr2.3663' => 'acertr', 'Atru.chr3.955' => 'acertr', 'Atru.chr3.966' => 'acertr', 'AUR62033777' => 'cqu', 'AUR62040649' => 'cqu', 'BcaB01g02639' => 'bca', 'BcaB01g04419' => 'bca', 'BcaB02g10790' => 'bca', 'BcaB03g12419' => 'bca', 'BcaB04g16927' => 'bca', 'BcaB06g25487' => 'bca', 'BcaB06g28992' => 'bca', 'BcaB07g33180' => 'bca', 'BcaB08g36060' => 'bca', 'BcaC01g02902' => 'bca', 'BcaC01g06446' => 'bca', 'BcaC02g11492' => 'bca', 'BcaC04g20055' => 'bca', 'BcaC05g29211' => 'bca', 'BcaC07g40590' => 'bca', 'BcaC08g43662' => 'bca', 'BcaC08g43664' => 'bca', 'BcaC08g44228' => 'bca', 'BolC3t13985H' => 'bol', 'BolC3t18118H' => 'bol', 'BolC3t21633H' => 'bol', 'BolC4t23052H' => 'bol', 'BolC6t36167H' => 'bol', 'BolC6t36830H' => 'bol', 'BolC9t57683H' => 'bol', 'BolC9t58999H' => 'bol', 'BraA03t10632Z' => 'bra', 'BraA05t20622Z' => 'bra', 'BraA06t26309Z' => 'bra', 'BraA08t32072Z' => 'bra', 'BraA10t43501Z' => 'bra', 'BraSC56t46392Z' => 'bra', 'C03p15470' => 'bna', 'C03p58570' => 'bna', 'C03p93350' => 'bna', 'C04p14780' => 'bna', 'C06p16300' => 'bna', 'C08p42160' => 'bna', 'C09p48330' => 'bna', 'C09p61610' => 'bna', 'CAN.G1055.2' => 'can', 'CAN.G123.3' => 'can', 'CAN.G1241.17' => 'can', 'CAN.G337.20' => 'can', 'CAN.G469.4' => 'can', 'CAN.G492.30' => 'can', 'CAN.G553.20' => 'can', 'CAN.G626.20' => 'can', 'CAN.G890.75' => 'can', 'CANSAT11G1841' => 'cansat', 'CANSAT25G0563' => 'cansat', 'CANSAT56G1177' => 'cansat', 'CANSAT56G1842' => 'cansat', 'CANSAT56G4457' => 'cansat', 'CARHR045640' => 'chi', 'CARHR087700' => 'chi', 'CARHR107840' => 'chi', 'CARHR243970' => 'chi', 'CARHR270510' => 'chi', 'Carub.0001s4430' => 'cru', 'Carub.0001s4452' => 'cru', 'Carub.0003s1245' => 'cru', 'Carub.0003s3172' => 'cru', 'Carub.0007s0466' => 'cru', 'Carub.0008s1724' => 'cru', 'Ca_06385_v3' => 'car', 'Ca_20178_v3' => 'car', 'Ca_23588_v3' => 'car', 'Ca_24962_v3' => 'car', 'Ca_29966_v3' => 'car', 'CBR_g22982' => 'cbr', 'CBR_g26147' => 'cbr', 'CBR_g32072' => 'cbr', 'CBR_g41302' => 'cbr', 'CBR_g46439' => 'cbr', 'Cc04_g02110' => 'ccan', 'Cc05_g14780' => 'ccan', 'Cc06_g11160' => 'ccan', 'Cc07_g11640' => 'ccan', 'CDE04G1452' => 'cde', 'CDE04G2926' => 'cde', 'CDE05G0521' => 'cde', 'CDE05G0623' => 'cde', 'CDE05G0661' => 'cde', 'CDE07G1605' => 'cde', 'Cfa000059' => 'cfa', 'Cfa003100' => 'cfa', 'Cfa020216' => 'cfa', 'Cfa020217' => 'cfa', 'Ciclev10008523m.g' => 'ccl', 'Ciclev10009063m.g' => 'ccl', 'CiPaw.03G218100' => 'cil', 'CiPaw.07G004200' => 'cil', 'CiPaw.09G106600' => 'cil', 'CiPaw.11G202100' => 'cil', 'ClCG01G020830' => 'cla', 'ClCG09G021050' => 'cla', 'COL.COLO4_02647' => 'col', 'COL.COLO4_09804' => 'col', 'COL.COLO4_18223' => 'col', 'COL.COLO4_18224' => 'col', 'COL.COLO4_22536' => 'col', 'Cpa.g.sc12.177' => 'cpa', 'Cpa.g.sc27.251' => 'cpa', 'Cpa.g.sc55.185' => 'cpa', 'Cre10.g466750' => 'cre', 'Cre17.g713850' => 'cre', 'CsaV3_2G017890' => 'csa', 'CsaV3_6G047800' => 'csa', 'CsaV3_7G018620' => 'csa', 'CSS0003072' => 'camsi', 'CSS0009537' => 'camsi', 'CSS0009950' => 'camsi', 'CSS0013877' => 'camsi', 'CSS0023998' => 'camsi', 'CSS0026018' => 'camsi', 'CSS0026852' => 'camsi', 'CSS0029099' => 'camsi', 'CSS0043861' => 'camsi', 'CSS0044287' => 'camsi', 'CSS0044826' => 'camsi', 'DCAR_013222' => 'dca', 'DCAR_017087' => 'dca', 'DCAR_032248' => 'dca', 'Dinv04406' => 'din', 'Dinv04557' => 'din', 'Dinv30392' => 'din', 'Dinv36749' => 'din', 'Dinv40172' => 'din', 'Dinv42298' => 'din', 'Duzib147G1388' => 'dzi', 'Duzib168G0024' => 'dzi', 'Duzib213G0174' => 'dzi', 'ECA232G3761' => 'eca', 'ECA234G2581' => 'eca', 'ECA236G0418' => 'eca', 'ECA238G2872' => 'eca', 'ECA240G3456' => 'eca', 'ECA246G3133' => 'eca', 'EL10Ac4g07608' => 'bvu', 'EL10Ac4g08421' => 'bvu', 'EL10Ac4g08422' => 'bvu', 'Eucgr.C00914' => 'egr', 'Eucgr.F03698' => 'egr', 'Eucgr.J02527' => 'egr', 'FAN11G1246' => 'fan', 'FAN16G1863' => 'fan', 'FAN19G0124' => 'fan', 'FAN19G1834' => 'fan', 'FAN21G1318' => 'fan', 'FAN23G3039' => 'fan', 'FAN26G1224' => 'fan', 'FAN26G2695' => 'fan', 'FAN26G3274' => 'fan', 'FAN28G0616' => 'fan', 'FAN28G1918' => 'fan', 'FvH4_1g07140' => 'fve', 'FvH4_1g10540' => 'fve', 'FvH4_3g29510' => 'fve', 'Glyma.01G160000' => 'gma', 'Glyma.02G042000' => 'gma', 'Glyma.02G299100' => 'gma', 'Glyma.07G058800' => 'gma', 'Glyma.08G327400' => 'gma', 'Glyma.11G084100' => 'gma', 'Glyma.14G014700' => 'gma', 'Glyma.16G027700' => 'gma', 'Glyma.16G118800' => 'gma', 'Glyma.18G080000' => 'gma', 'Gohir.A01G089900' => 'ghi', 'Gohir.A02G177000' => 'ghi', 'Gohir.A13G134101' => 'ghi', 'Gohir.A13G193700' => 'ghi', 'Gohir.D01G075200' => 'ghi', 'Gohir.D03G002900' => 'ghi', 'Gohir.D13G137600' => 'ghi', 'Gohir.D13G199500' => 'ghi', 'Gorai.002G098400' => 'gra', 'Gorai.003G003100' => 'gra', 'Gorai.013G154200' => 'gra', 'Gorai.013G228200' => 'gra', 'GSVIVG01003478001' => 'vvi', 'GSVIVG01003838001' => 'vvi', 'GSVIVG01014639001' => 'vvi', 'GSVIVG01015228001' => 'vvi', 'HanXRQChr03g0077731' => 'han', 'HanXRQChr04g0112571' => 'han', 'HanXRQChr04g0119361' => 'han', 'HanXRQChr05g0149311' => 'han', 'HanXRQChr09g0276371' => 'han', 'HanXRQChr11g0324721' => 'han', 'HanXRQChr11g0333431' => 'han', 'HanXRQChr12g0354721' => 'han', 'HanXRQChr14g0431241' => 'han', 'HanXRQChr14g0442381' => 'han', 'Haze_03676' => 'cav', 'Haze_06992' => 'cav', 'Haze_09801' => 'cav', 'Haze_09802' => 'cav', 'Haze_25900' => 'cav', 'Haze_27653' => 'cav', 'Hma1.2p1_0036F.1_g022660' => 'hma', 'Hma1.2p1_0388F.1_g142210' => 'hma', 'Hma1.2p1_0657F.1_g196890' => 'hma', 'Hma1.2p1_0663F.1_g198760' => 'hma', 'Hma1.2p1_0663F.1_g198900' => 'hma', 'Hma1.2p1_0800F.1_g219950' => 'hma', 'Hma1.2p1_0800F.1_g219960' => 'hma', 'Hma1.2p1_2491F.1_g323230' => 'hma', 'HPP92_005550' => 'vpl', 'HPP92_020398' => 'vpl', 'HPP92_022693' => 'vpl', 'HPP92_022695' => 'vpl', 'HPP92_024891' => 'vpl', 'Hund03616' => 'sun', 'Hund10417' => 'sun', 'Lalb_Chr05g0211931' => 'lal', 'Lalb_Chr10g0100221' => 'lal', 'Lalb_Chr10g0107381' => 'lal', 'Lalb_Chr15g0081981' => 'lal', 'Lalb_Chr17g0342301' => 'lal', 'Lalb_Chr17g0348881' => 'lal', 'Lalb_Chr20g0113991' => 'lal', 'Lj1C888T3' => 'lonja', 'Lj1C888T4' => 'lonja', 'Lj2g0003640' => 'lja', 'Lj2P259T13' => 'lonja', 'Lj3g0022427' => 'lja', 'Lj4A232T48' => 'lonja', 'Lj4C309G3' => 'lonja', 'Lj5A47T39' => 'lonja', 'Lj6g0007553' => 'lja', 'Lj8P177T19' => 'lonja', 'LjContig00081g0010826' => 'lja', 'Lsat_1_v5_gn_2_74441' => 'lsa', 'Lsat_1_v5_gn_4_95580' => 'lsa', 'Lsat_1_v5_gn_5_145700' => 'lsa', 'Lsat_1_v5_gn_7_113221' => 'lsa', 'Lsat_1_v5_gn_9_21861' => 'lsa', 'Lsat_1_v5_gn_9_90540' => 'lsa', 'Manes.02G112600' => 'mes', 'Manes.03G031800' => 'mes', 'Manes.03G139860' => 'mes', 'Manes.15G062000' => 'mes', 'Mapoly0010s0095' => 'mpo', 'Mapoly0029s0059' => 'mpo', 'Mapoly0076s0098' => 'mpo', 'MBI08_g24262_MAGBIO' => 'mbi', 'MBI08_g24263_MAGBIO' => 'mbi', 'MBI19_g42006_MAGBIO' => 'mbi', 'MBI19_g44081_MAGBIO' => 'mbi', 'MBI19_g45745_MAGBIO' => 'mbi', 'MCO02G080' => 'mco', 'MCO05G462' => 'mco', 'MCO15G451' => 'mco', 'MD02G1075400' => 'mdo', 'MD02G1075800' => 'mdo', 'MD02G1119500' => 'mdo', 'MD02G1119600' => 'mdo', 'MD02G1238300' => 'mdo', 'MD03G1187100' => 'mdo', 'MD11G1202100' => 'mdo', 'MD15G1233400' => 'mdo', 'Medtr3g058410' => 'mtr', 'Medtr5g023760' => 'mtr', 'Medtr5g095470' => 'mtr', 'Medtr8g028040' => 'mtr', 'MELO3C003551.2' => 'cme', 'MELO3C007969.2' => 'cme', 'MELO3C023285.2' => 'cme', 'MELO3C024900.2' => 'cme', 'Migut.H01771' => 'egut', 'Migut.J00592' => 'egut', 'Migut.K00586' => 'egut', 'Migut.M01431' => 'egut', 'Migut.M01667' => 'egut', 'MSTRG.10574' => 'ama', 'MSTRG.13014' => 'ama', 'MSTRG.15786' => 'ama', 'MSTRG.16042' => 'ama', 'MSTRG.19528' => 'ama', 'MSTRG.6989' => 'ama', 'Nitab4.5_0000461g0140' => 'nta', 'Nitab4.5_0000540g0230' => 'nta', 'Nitab4.5_0000702g0070' => 'nta', 'Nitab4.5_0002967g0050' => 'nta', 'Nitab4.5_0003491g0050' => 'nta', 'Nitab4.5_0006756g0030' => 'nta', 'Nitab4.5_0009088g0010' => 'nta', 'Nitab4.5_0010958g0010' => 'nta', 'Nitab4.5_0028970g0010' => 'nta', 'Nn1g03217' => 'nnu', 'Nn5g30958' => 'nnu', 'Nn6g35428' => 'nnu', 'Oeu002772.1' => 'oeu', 'Oeu034557.1' => 'oeu', 'Oeu037597.1' => 'oeu', 'Oeu041430.1' => 'oeu', 'Oeu044497.1' => 'oeu', 'Oeu049350.2' => 'oeu', 'Oeu057088.1' => 'oeu', 'Os03g0133900' => 'osa', 'Os03g0185000' => 'osa', 'Os03g0196600' => 'osa', 'Os05g0533500' => 'osa', 'Peaxi162Scf00079g00143' => 'pax', 'Peaxi162Scf00285g00073' => 'pax', 'Peaxi162Scf00498g00131' => 'pax', 'Peaxi162Scf00515g00045' => 'pax', 'Peaxi162Scf01183g00139' => 'pax', 'PGR031G1944' => 'pgr', 'PGR083G1606' => 'pgr', 'PGR102G2788' => 'pgr', 'PGR142G2479' => 'pgr', 'PGSC0003DMG400000282' => 'stu', 'PGSC0003DMG400001573' => 'stu', 'PGSC0003DMG400014379' => 'stu', 'PGSC0003DMG400022181' => 'stu', 'Phvul.001G170600' => 'pvu', 'Phvul.002G114700' => 'pvu', 'Phvul.003G269000' => 'pvu', 'Phvul.006G055200' => 'pvu', 'Phvul.008G277800' => 'pvu', 'Phvul.010G110600' => 'pvu', 'Potri.001G365500' => 'ptr', 'Potri.005G099700' => 'ptr', 'Potri.011G068001' => 'ptr', 'Potri.013G109500' => 'ptr', 'Potri.015G147000' => 'ptr', 'Pp3c20_3500' => 'ppa', 'Pp3c23_17150' => 'ppa', 'Pp3c23_21600' => 'ppa', 'Pp3c24_14040' => 'ppa', 'Pp3c8_18470' => 'ppa', 'PRCOL_00000029' => 'pco', 'PRCOL_00002113' => 'pco', 'PRCOL_00002366' => 'pco', 'Prupe.4G239400' => 'ppe', 'Prupe.4G239500' => 'ppe', 'Prupe.7G179500' => 'ppe', 'Prupe.7G212700' => 'ppe', 'Psat2g008240' => 'psa', 'Psat2g008280' => 'psa', 'Psat2g008320' => 'psa', 'Psat2g129920' => 'psa', 'Psat4g158520' => 'psa', 'Psat5g173800' => 'psa', 'Psat7g256840' => 'psa', 'PSO063G0739' => 'pso', 'PSO063G2203' => 'pso', 'PSO063G5440' => 'pso', 'PSO170G5797' => 'pso', 'PSO541G0062' => 'pso', 'PSO541G3229' => 'pso', 'PSO675G0721' => 'pso', 'PSO675G9329' => 'pso', 'PSO832G0250' => 'pso', 'PSO832G2046' => 'pso', 'PSO832G4406' => 'pso', 'QL02p063027' => 'qlo', 'QL05p068287' => 'qlo', 'QL05p068781' => 'qlo', 'QL06p052727' => 'qlo', 'QL06p053842' => 'qlo', 'QL08p004961' => 'qlo', 'RcHm_v2.0_Chr2g0093021' => 'rch', 'RcHm_v2.0_Chr2g0097471' => 'rch', 'RcHm_v2.0_Chr2g0097591' => 'rch', 'RcHm_v2.0_Chr5g0054471' => 'rch', 'Rhsim04G0014100' => 'rsi', 'Rhsim08G0232100' => 'rsi', 'Rhsim10G0198900' => 'rsi', 'Rhsim13G0142600' => 'rsi', 'Sabra05G0082400' => 'sbr', 'Sabra13G0094400' => 'sbr', 'Sabra15G0156000' => 'sbr', 'Sabra16G0239100' => 'sbr', 'SalBow6G3897' => 'sbo', 'SalBow8G0744' => 'sbo', 'SalBow8G0917' => 'sbo', 'Sc03g0011120' => 'sci', 'Sc07g0001310' => 'sci', 'Sc16g0007950' => 'sci', 'Sed0000282' => 'sed', 'Sed0002951' => 'sed', 'Sed0005975' => 'sed', 'Sed0015535' => 'sed', 'Sed0019186' => 'sed', 'SEGI_03940' => 'sgi', 'SEGI_11183' => 'sgi', 'SEGI_27318' => 'sgi', 'SEGI_39826' => 'sgi', 'SGA_v2.0_scaffold168G38538' => 'sas', 'SGA_v2.0_scaffold62G21593' => 'sas', 'SGA_v2.0_scaffold630G53289' => 'sas', 'SGA_v2.0_scaffold8G04394' => 'sas', 'SHI24909' => 'shi', 'SMO134G0076' => 'smo', 'SMO143G0050' => 'smo', 'SMO358G0382' => 'smo', 'Solyc02g082850.3' => 'sly', 'Solyc07g065340.1' => 'sly', 'Solyc10g006040.1' => 'sly', 'Solyc12g008780.2' => 'sly', 'Sopen02g027650' => 'spe', 'Sopen07g033540' => 'spe', 'Sopen10g002000' => 'spe', 'Sopen12g003710' => 'spe', 'Sp1g41530' => 'spa', 'Sp3g11280' => 'spa', 'Sp3g30970' => 'spa', 'Sp6g18510' => 'spa', 'Sp7g33410' => 'spa', 'TAR383G0004' => 'tar', 'TAR625G0710' => 'tar', 'TAR626G1619' => 'tar', 'TAR629G0660' => 'tar', 'TAR629G3524' => 'tar', 'THA.LOC104807433' => 'tha', 'THA.LOC104811741' => 'tha', 'THA.LOC104815701' => 'tha', 'THA.LOC104817749' => 'tha', 'THA.LOC104822738' => 'tha', 'Thecc.01G007200' => 'tca', 'Thecc.06G237500' => 'tca', 'Thecc.07G017000' => 'tca', 'Thecc.09G092300' => 'tca', 'Thhalv10012384m.g' => 'esa', 'Thhalv10014167m.g' => 'esa', 'Thhalv10020893m.g' => 'esa', 'Thhalv10022779m.g' => 'esa', 'Thhalv10025792m.g' => 'esa', 'TPR.G1097' => 'tpr', 'TPR.G25139' => 'tpr', 'TPR.G27357' => 'tpr', 'TPR.G8597' => 'tpr', 'TWI34G0677' => 'twi', 'TWI38G2328' => 'twi', 'TWI39G1095' => 'twi', 'TWI53G0535' => 'twi', 'TWI63G1380' => 'twi', 'TWI63G1837' => 'twi', 'TWI73G0347' => 'twi', 'unitig_62.g23296' => 'ugi', 'unitig_699.g19416' => 'ugi', 'unitig_85.g27347' => 'ugi', 'vmacro09660' => 'vma', 'vmacro09661' => 'vma', 'vmacro18815' => 'vma', 'vmacro20523' => 'vma', 'VMungo0251G1201' => 'vmu', 'VMungo0331G1032' => 'vmu', 'VMungo0540G0152' => 'vmu', 'VMungo0647G0913' => 'vmu', 'VMungo1215G1556' => 'vmu', 'VMungo1215G2799' => 'vmu', 'VMungo1383G0928' => 'vmu', 'Zm00001eb002740' => 'zma', 'Zm00001eb293180' => 'zma', 'Zm00001eb361640' => 'zma' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D001205' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001205' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D001205' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001205' )include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151
Warning (2): Invalid argument supplied for foreach() [APP/View/Tools/similarity_heatmap.ctp, line 77]Code Context <label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?> $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001205', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '518', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A03p13200' => 'bna', 'A05p17220' => 'bna', 'A06p33740' => 'bna', 'A08p00160' => 'bna', 'A10p14100' => 'bna', 'Aa31LG10G240' => 'aar', 'Aa31LG3G12710' => 'aar', 'Aa31LG6G12600' => 'aar', 'Aa31LG8G14910' => 'aar', 'Aa31LG8G320' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3598' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2981' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5574' => 'aag', 'Actinidia05020' => 'ach', 'Actinidia05025' => 'ach', 'Actinidia17385' => 'ach', 'Actinidia21748' => 'ach', 'Ah.04g163990' => 'amhyb', 'Ah.06g181220' => 'amhyb', 'AL1G64070' => 'aly', 'AL3G24850' => 'aly', 'AL3G50600' => 'aly', 'AL7G15500' => 'aly', 'AL8G32600' => 'aly', 'Aqoxy2G02475' => 'aox', 'Aqoxy4G02246' => 'aox', 'Aqoxy6G01700' => 'aox', 'Aqoxy7G01252' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2DX304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82Q4AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97A83C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98EFWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AM8NHJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3L4BD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0DJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4CMZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA7XEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NTH9NT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAFX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN33QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF5NK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VS0KPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMD1K9' => 'arhy', 'AT1G55920' => 'ath', 'AT2G17640' => 'ath', 'AT3G13110' => 'ath', 'AT4G35640' => 'ath', 'AT5G56760' => 'ath', 'ATR0624G017' => 'atr', 'ATR0652G003' => 'atr', 'ATR0661G415' => 'atr', 'Atru.chr1.2329' => 'acertr', 'Atru.chr11.1489' => 'acertr', 'Atru.chr2.3663' => 'acertr', 'Atru.chr3.955' => 'acertr', 'Atru.chr3.966' => 'acertr', 'AUR62033777' => 'cqu', 'AUR62040649' => 'cqu', 'BcaB01g02639' => 'bca', 'BcaB01g04419' => 'bca', 'BcaB02g10790' => 'bca', 'BcaB03g12419' => 'bca', 'BcaB04g16927' => 'bca', 'BcaB06g25487' => 'bca', 'BcaB06g28992' => 'bca', 'BcaB07g33180' => 'bca', 'BcaB08g36060' => 'bca', 'BcaC01g02902' => 'bca', 'BcaC01g06446' => 'bca', 'BcaC02g11492' => 'bca', 'BcaC04g20055' => 'bca', 'BcaC05g29211' => 'bca', 'BcaC07g40590' => 'bca', 'BcaC08g43662' => 'bca', 'BcaC08g43664' => 'bca', 'BcaC08g44228' => 'bca', 'BolC3t13985H' => 'bol', 'BolC3t18118H' => 'bol', 'BolC3t21633H' => 'bol', 'BolC4t23052H' => 'bol', 'BolC6t36167H' => 'bol', 'BolC6t36830H' => 'bol', 'BolC9t57683H' => 'bol', 'BolC9t58999H' => 'bol', 'BraA03t10632Z' => 'bra', 'BraA05t20622Z' => 'bra', 'BraA06t26309Z' => 'bra', 'BraA08t32072Z' => 'bra', 'BraA10t43501Z' => 'bra', 'BraSC56t46392Z' => 'bra', 'C03p15470' => 'bna', 'C03p58570' => 'bna', 'C03p93350' => 'bna', 'C04p14780' => 'bna', 'C06p16300' => 'bna', 'C08p42160' => 'bna', 'C09p48330' => 'bna', 'C09p61610' => 'bna', 'CAN.G1055.2' => 'can', 'CAN.G123.3' => 'can', 'CAN.G1241.17' => 'can', 'CAN.G337.20' => 'can', 'CAN.G469.4' => 'can', 'CAN.G492.30' => 'can', 'CAN.G553.20' => 'can', 'CAN.G626.20' => 'can', 'CAN.G890.75' => 'can', 'CANSAT11G1841' => 'cansat', 'CANSAT25G0563' => 'cansat', 'CANSAT56G1177' => 'cansat', 'CANSAT56G1842' => 'cansat', 'CANSAT56G4457' => 'cansat', 'CARHR045640' => 'chi', 'CARHR087700' => 'chi', 'CARHR107840' => 'chi', 'CARHR243970' => 'chi', 'CARHR270510' => 'chi', 'Carub.0001s4430' => 'cru', 'Carub.0001s4452' => 'cru', 'Carub.0003s1245' => 'cru', 'Carub.0003s3172' => 'cru', 'Carub.0007s0466' => 'cru', 'Carub.0008s1724' => 'cru', 'Ca_06385_v3' => 'car', 'Ca_20178_v3' => 'car', 'Ca_23588_v3' => 'car', 'Ca_24962_v3' => 'car', 'Ca_29966_v3' => 'car', 'CBR_g22982' => 'cbr', 'CBR_g26147' => 'cbr', 'CBR_g32072' => 'cbr', 'CBR_g41302' => 'cbr', 'CBR_g46439' => 'cbr', 'Cc04_g02110' => 'ccan', 'Cc05_g14780' => 'ccan', 'Cc06_g11160' => 'ccan', 'Cc07_g11640' => 'ccan', 'CDE04G1452' => 'cde', 'CDE04G2926' => 'cde', 'CDE05G0521' => 'cde', 'CDE05G0623' => 'cde', 'CDE05G0661' => 'cde', 'CDE07G1605' => 'cde', 'Cfa000059' => 'cfa', 'Cfa003100' => 'cfa', 'Cfa020216' => 'cfa', 'Cfa020217' => 'cfa', 'Ciclev10008523m.g' => 'ccl', 'Ciclev10009063m.g' => 'ccl', 'CiPaw.03G218100' => 'cil', 'CiPaw.07G004200' => 'cil', 'CiPaw.09G106600' => 'cil', 'CiPaw.11G202100' => 'cil', 'ClCG01G020830' => 'cla', 'ClCG09G021050' => 'cla', 'COL.COLO4_02647' => 'col', 'COL.COLO4_09804' => 'col', 'COL.COLO4_18223' => 'col', 'COL.COLO4_18224' => 'col', 'COL.COLO4_22536' => 'col', 'Cpa.g.sc12.177' => 'cpa', 'Cpa.g.sc27.251' => 'cpa', 'Cpa.g.sc55.185' => 'cpa', 'Cre10.g466750' => 'cre', 'Cre17.g713850' => 'cre', 'CsaV3_2G017890' => 'csa', 'CsaV3_6G047800' => 'csa', 'CsaV3_7G018620' => 'csa', 'CSS0003072' => 'camsi', 'CSS0009537' => 'camsi', 'CSS0009950' => 'camsi', 'CSS0013877' => 'camsi', 'CSS0023998' => 'camsi', 'CSS0026018' => 'camsi', 'CSS0026852' => 'camsi', 'CSS0029099' => 'camsi', 'CSS0043861' => 'camsi', 'CSS0044287' => 'camsi', 'CSS0044826' => 'camsi', 'DCAR_013222' => 'dca', 'DCAR_017087' => 'dca', 'DCAR_032248' => 'dca', 'Dinv04406' => 'din', 'Dinv04557' => 'din', 'Dinv30392' => 'din', 'Dinv36749' => 'din', 'Dinv40172' => 'din', 'Dinv42298' => 'din', 'Duzib147G1388' => 'dzi', 'Duzib168G0024' => 'dzi', 'Duzib213G0174' => 'dzi', 'ECA232G3761' => 'eca', 'ECA234G2581' => 'eca', 'ECA236G0418' => 'eca', 'ECA238G2872' => 'eca', 'ECA240G3456' => 'eca', 'ECA246G3133' => 'eca', 'EL10Ac4g07608' => 'bvu', 'EL10Ac4g08421' => 'bvu', 'EL10Ac4g08422' => 'bvu', 'Eucgr.C00914' => 'egr', 'Eucgr.F03698' => 'egr', 'Eucgr.J02527' => 'egr', 'FAN11G1246' => 'fan', 'FAN16G1863' => 'fan', 'FAN19G0124' => 'fan', 'FAN19G1834' => 'fan', 'FAN21G1318' => 'fan', 'FAN23G3039' => 'fan', 'FAN26G1224' => 'fan', 'FAN26G2695' => 'fan', 'FAN26G3274' => 'fan', 'FAN28G0616' => 'fan', 'FAN28G1918' => 'fan', 'FvH4_1g07140' => 'fve', 'FvH4_1g10540' => 'fve', 'FvH4_3g29510' => 'fve', 'Glyma.01G160000' => 'gma', 'Glyma.02G042000' => 'gma', 'Glyma.02G299100' => 'gma', 'Glyma.07G058800' => 'gma', 'Glyma.08G327400' => 'gma', 'Glyma.11G084100' => 'gma', 'Glyma.14G014700' => 'gma', 'Glyma.16G027700' => 'gma', 'Glyma.16G118800' => 'gma', 'Glyma.18G080000' => 'gma', 'Gohir.A01G089900' => 'ghi', 'Gohir.A02G177000' => 'ghi', 'Gohir.A13G134101' => 'ghi', 'Gohir.A13G193700' => 'ghi', 'Gohir.D01G075200' => 'ghi', 'Gohir.D03G002900' => 'ghi', 'Gohir.D13G137600' => 'ghi', 'Gohir.D13G199500' => 'ghi', 'Gorai.002G098400' => 'gra', 'Gorai.003G003100' => 'gra', 'Gorai.013G154200' => 'gra', 'Gorai.013G228200' => 'gra', 'GSVIVG01003478001' => 'vvi', 'GSVIVG01003838001' => 'vvi', 'GSVIVG01014639001' => 'vvi', 'GSVIVG01015228001' => 'vvi', 'HanXRQChr03g0077731' => 'han', 'HanXRQChr04g0112571' => 'han', 'HanXRQChr04g0119361' => 'han', 'HanXRQChr05g0149311' => 'han', 'HanXRQChr09g0276371' => 'han', 'HanXRQChr11g0324721' => 'han', 'HanXRQChr11g0333431' => 'han', 'HanXRQChr12g0354721' => 'han', 'HanXRQChr14g0431241' => 'han', 'HanXRQChr14g0442381' => 'han', 'Haze_03676' => 'cav', 'Haze_06992' => 'cav', 'Haze_09801' => 'cav', 'Haze_09802' => 'cav', 'Haze_25900' => 'cav', 'Haze_27653' => 'cav', 'Hma1.2p1_0036F.1_g022660' => 'hma', 'Hma1.2p1_0388F.1_g142210' => 'hma', 'Hma1.2p1_0657F.1_g196890' => 'hma', 'Hma1.2p1_0663F.1_g198760' => 'hma', 'Hma1.2p1_0663F.1_g198900' => 'hma', 'Hma1.2p1_0800F.1_g219950' => 'hma', 'Hma1.2p1_0800F.1_g219960' => 'hma', 'Hma1.2p1_2491F.1_g323230' => 'hma', 'HPP92_005550' => 'vpl', 'HPP92_020398' => 'vpl', 'HPP92_022693' => 'vpl', 'HPP92_022695' => 'vpl', 'HPP92_024891' => 'vpl', 'Hund03616' => 'sun', 'Hund10417' => 'sun', 'Lalb_Chr05g0211931' => 'lal', 'Lalb_Chr10g0100221' => 'lal', 'Lalb_Chr10g0107381' => 'lal', 'Lalb_Chr15g0081981' => 'lal', 'Lalb_Chr17g0342301' => 'lal', 'Lalb_Chr17g0348881' => 'lal', 'Lalb_Chr20g0113991' => 'lal', 'Lj1C888T3' => 'lonja', 'Lj1C888T4' => 'lonja', 'Lj2g0003640' => 'lja', 'Lj2P259T13' => 'lonja', 'Lj3g0022427' => 'lja', 'Lj4A232T48' => 'lonja', 'Lj4C309G3' => 'lonja', 'Lj5A47T39' => 'lonja', 'Lj6g0007553' => 'lja', 'Lj8P177T19' => 'lonja', 'LjContig00081g0010826' => 'lja', 'Lsat_1_v5_gn_2_74441' => 'lsa', 'Lsat_1_v5_gn_4_95580' => 'lsa', 'Lsat_1_v5_gn_5_145700' => 'lsa', 'Lsat_1_v5_gn_7_113221' => 'lsa', 'Lsat_1_v5_gn_9_21861' => 'lsa', 'Lsat_1_v5_gn_9_90540' => 'lsa', 'Manes.02G112600' => 'mes', 'Manes.03G031800' => 'mes', 'Manes.03G139860' => 'mes', 'Manes.15G062000' => 'mes', 'Mapoly0010s0095' => 'mpo', 'Mapoly0029s0059' => 'mpo', 'Mapoly0076s0098' => 'mpo', 'MBI08_g24262_MAGBIO' => 'mbi', 'MBI08_g24263_MAGBIO' => 'mbi', 'MBI19_g42006_MAGBIO' => 'mbi', 'MBI19_g44081_MAGBIO' => 'mbi', 'MBI19_g45745_MAGBIO' => 'mbi', 'MCO02G080' => 'mco', 'MCO05G462' => 'mco', 'MCO15G451' => 'mco', 'MD02G1075400' => 'mdo', 'MD02G1075800' => 'mdo', 'MD02G1119500' => 'mdo', 'MD02G1119600' => 'mdo', 'MD02G1238300' => 'mdo', 'MD03G1187100' => 'mdo', 'MD11G1202100' => 'mdo', 'MD15G1233400' => 'mdo', 'Medtr3g058410' => 'mtr', 'Medtr5g023760' => 'mtr', 'Medtr5g095470' => 'mtr', 'Medtr8g028040' => 'mtr', 'MELO3C003551.2' => 'cme', 'MELO3C007969.2' => 'cme', 'MELO3C023285.2' => 'cme', 'MELO3C024900.2' => 'cme', 'Migut.H01771' => 'egut', 'Migut.J00592' => 'egut', 'Migut.K00586' => 'egut', 'Migut.M01431' => 'egut', 'Migut.M01667' => 'egut', 'MSTRG.10574' => 'ama', 'MSTRG.13014' => 'ama', 'MSTRG.15786' => 'ama', 'MSTRG.16042' => 'ama', 'MSTRG.19528' => 'ama', 'MSTRG.6989' => 'ama', 'Nitab4.5_0000461g0140' => 'nta', 'Nitab4.5_0000540g0230' => 'nta', 'Nitab4.5_0000702g0070' => 'nta', 'Nitab4.5_0002967g0050' => 'nta', 'Nitab4.5_0003491g0050' => 'nta', 'Nitab4.5_0006756g0030' => 'nta', 'Nitab4.5_0009088g0010' => 'nta', 'Nitab4.5_0010958g0010' => 'nta', 'Nitab4.5_0028970g0010' => 'nta', 'Nn1g03217' => 'nnu', 'Nn5g30958' => 'nnu', 'Nn6g35428' => 'nnu', 'Oeu002772.1' => 'oeu', 'Oeu034557.1' => 'oeu', 'Oeu037597.1' => 'oeu', 'Oeu041430.1' => 'oeu', 'Oeu044497.1' => 'oeu', 'Oeu049350.2' => 'oeu', 'Oeu057088.1' => 'oeu', 'Os03g0133900' => 'osa', 'Os03g0185000' => 'osa', 'Os03g0196600' => 'osa', 'Os05g0533500' => 'osa', 'Peaxi162Scf00079g00143' => 'pax', 'Peaxi162Scf00285g00073' => 'pax', 'Peaxi162Scf00498g00131' => 'pax', 'Peaxi162Scf00515g00045' => 'pax', 'Peaxi162Scf01183g00139' => 'pax', 'PGR031G1944' => 'pgr', 'PGR083G1606' => 'pgr', 'PGR102G2788' => 'pgr', 'PGR142G2479' => 'pgr', 'PGSC0003DMG400000282' => 'stu', 'PGSC0003DMG400001573' => 'stu', 'PGSC0003DMG400014379' => 'stu', 'PGSC0003DMG400022181' => 'stu', 'Phvul.001G170600' => 'pvu', 'Phvul.002G114700' => 'pvu', 'Phvul.003G269000' => 'pvu', 'Phvul.006G055200' => 'pvu', 'Phvul.008G277800' => 'pvu', 'Phvul.010G110600' => 'pvu', 'Potri.001G365500' => 'ptr', 'Potri.005G099700' => 'ptr', 'Potri.011G068001' => 'ptr', 'Potri.013G109500' => 'ptr', 'Potri.015G147000' => 'ptr', 'Pp3c20_3500' => 'ppa', 'Pp3c23_17150' => 'ppa', 'Pp3c23_21600' => 'ppa', 'Pp3c24_14040' => 'ppa', 'Pp3c8_18470' => 'ppa', 'PRCOL_00000029' => 'pco', 'PRCOL_00002113' => 'pco', 'PRCOL_00002366' => 'pco', 'Prupe.4G239400' => 'ppe', 'Prupe.4G239500' => 'ppe', 'Prupe.7G179500' => 'ppe', 'Prupe.7G212700' => 'ppe', 'Psat2g008240' => 'psa', 'Psat2g008280' => 'psa', 'Psat2g008320' => 'psa', 'Psat2g129920' => 'psa', 'Psat4g158520' => 'psa', 'Psat5g173800' => 'psa', 'Psat7g256840' => 'psa', 'PSO063G0739' => 'pso', 'PSO063G2203' => 'pso', 'PSO063G5440' => 'pso', 'PSO170G5797' => 'pso', 'PSO541G0062' => 'pso', 'PSO541G3229' => 'pso', 'PSO675G0721' => 'pso', 'PSO675G9329' => 'pso', 'PSO832G0250' => 'pso', 'PSO832G2046' => 'pso', 'PSO832G4406' => 'pso', 'QL02p063027' => 'qlo', 'QL05p068287' => 'qlo', 'QL05p068781' => 'qlo', 'QL06p052727' => 'qlo', 'QL06p053842' => 'qlo', 'QL08p004961' => 'qlo', 'RcHm_v2.0_Chr2g0093021' => 'rch', 'RcHm_v2.0_Chr2g0097471' => 'rch', 'RcHm_v2.0_Chr2g0097591' => 'rch', 'RcHm_v2.0_Chr5g0054471' => 'rch', 'Rhsim04G0014100' => 'rsi', 'Rhsim08G0232100' => 'rsi', 'Rhsim10G0198900' => 'rsi', 'Rhsim13G0142600' => 'rsi', 'Sabra05G0082400' => 'sbr', 'Sabra13G0094400' => 'sbr', 'Sabra15G0156000' => 'sbr', 'Sabra16G0239100' => 'sbr', 'SalBow6G3897' => 'sbo', 'SalBow8G0744' => 'sbo', 'SalBow8G0917' => 'sbo', 'Sc03g0011120' => 'sci', 'Sc07g0001310' => 'sci', 'Sc16g0007950' => 'sci', 'Sed0000282' => 'sed', 'Sed0002951' => 'sed', 'Sed0005975' => 'sed', 'Sed0015535' => 'sed', 'Sed0019186' => 'sed', 'SEGI_03940' => 'sgi', 'SEGI_11183' => 'sgi', 'SEGI_27318' => 'sgi', 'SEGI_39826' => 'sgi', 'SGA_v2.0_scaffold168G38538' => 'sas', 'SGA_v2.0_scaffold62G21593' => 'sas', 'SGA_v2.0_scaffold630G53289' => 'sas', 'SGA_v2.0_scaffold8G04394' => 'sas', 'SHI24909' => 'shi', 'SMO134G0076' => 'smo', 'SMO143G0050' => 'smo', 'SMO358G0382' => 'smo', 'Solyc02g082850.3' => 'sly', 'Solyc07g065340.1' => 'sly', 'Solyc10g006040.1' => 'sly', 'Solyc12g008780.2' => 'sly', 'Sopen02g027650' => 'spe', 'Sopen07g033540' => 'spe', 'Sopen10g002000' => 'spe', 'Sopen12g003710' => 'spe', 'Sp1g41530' => 'spa', 'Sp3g11280' => 'spa', 'Sp3g30970' => 'spa', 'Sp6g18510' => 'spa', 'Sp7g33410' => 'spa', 'TAR383G0004' => 'tar', 'TAR625G0710' => 'tar', 'TAR626G1619' => 'tar', 'TAR629G0660' => 'tar', 'TAR629G3524' => 'tar', 'THA.LOC104807433' => 'tha', 'THA.LOC104811741' => 'tha', 'THA.LOC104815701' => 'tha', 'THA.LOC104817749' => 'tha', 'THA.LOC104822738' => 'tha', 'Thecc.01G007200' => 'tca', 'Thecc.06G237500' => 'tca', 'Thecc.07G017000' => 'tca', 'Thecc.09G092300' => 'tca', 'Thhalv10012384m.g' => 'esa', 'Thhalv10014167m.g' => 'esa', 'Thhalv10020893m.g' => 'esa', 'Thhalv10022779m.g' => 'esa', 'Thhalv10025792m.g' => 'esa', 'TPR.G1097' => 'tpr', 'TPR.G25139' => 'tpr', 'TPR.G27357' => 'tpr', 'TPR.G8597' => 'tpr', 'TWI34G0677' => 'twi', 'TWI38G2328' => 'twi', 'TWI39G1095' => 'twi', 'TWI53G0535' => 'twi', 'TWI63G1380' => 'twi', 'TWI63G1837' => 'twi', 'TWI73G0347' => 'twi', 'unitig_62.g23296' => 'ugi', 'unitig_699.g19416' => 'ugi', 'unitig_85.g27347' => 'ugi', 'vmacro09660' => 'vma', 'vmacro09661' => 'vma', 'vmacro18815' => 'vma', 'vmacro20523' => 'vma', 'VMungo0251G1201' => 'vmu', 'VMungo0331G1032' => 'vmu', 'VMungo0540G0152' => 'vmu', 'VMungo0647G0913' => 'vmu', 'VMungo1215G1556' => 'vmu', 'VMungo1215G2799' => 'vmu', 'VMungo1383G0928' => 'vmu', 'Zm00001eb002740' => 'zma', 'Zm00001eb293180' => 'zma', 'Zm00001eb361640' => 'zma' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D001205', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001205' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D001205', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '518', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001205' ) ), 'genes' => array( 'A03p13200' => 'bna', 'A05p17220' => 'bna', 'A06p33740' => 'bna', 'A08p00160' => 'bna', 'A10p14100' => 'bna', 'Aa31LG10G240' => 'aar', 'Aa31LG3G12710' => 'aar', 'Aa31LG6G12600' => 'aar', 'Aa31LG8G14910' => 'aar', 'Aa31LG8G320' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3598' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2981' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5574' => 'aag', 'Actinidia05020' => 'ach', 'Actinidia05025' => 'ach', 'Actinidia17385' => 'ach', 'Actinidia21748' => 'ach', 'Ah.04g163990' => 'amhyb', 'Ah.06g181220' => 'amhyb', 'AL1G64070' => 'aly', 'AL3G24850' => 'aly', 'AL3G50600' => 'aly', 'AL7G15500' => 'aly', 'AL8G32600' => 'aly', 'Aqoxy2G02475' => 'aox', 'Aqoxy4G02246' => 'aox', 'Aqoxy6G01700' => 'aox', 'Aqoxy7G01252' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2DX304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82Q4AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97A83C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98EFWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AM8NHJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3L4BD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0DJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4CMZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA7XEQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NTH9NT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PAFX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN33QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QF5NK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VS0KPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMD1K9' => 'arhy', 'AT1G55920' => 'ath', 'AT2G17640' => 'ath', 'AT3G13110' => 'ath', 'AT4G35640' => 'ath', 'AT5G56760' => 'ath', 'ATR0624G017' => 'atr', 'ATR0652G003' => 'atr', 'ATR0661G415' => 'atr', 'Atru.chr1.2329' => 'acertr', 'Atru.chr11.1489' => 'acertr', 'Atru.chr2.3663' => 'acertr', 'Atru.chr3.955' => 'acertr', 'Atru.chr3.966' => 'acertr', 'AUR62033777' => 'cqu', 'AUR62040649' => 'cqu', 'BcaB01g02639' => 'bca', 'BcaB01g04419' => 'bca', 'BcaB02g10790' => 'bca', 'BcaB03g12419' => 'bca', 'BcaB04g16927' => 'bca', 'BcaB06g25487' => 'bca', 'BcaB06g28992' => 'bca', 'BcaB07g33180' => 'bca', 'BcaB08g36060' => 'bca', 'BcaC01g02902' => 'bca', 'BcaC01g06446' => 'bca', 'BcaC02g11492' => 'bca', 'BcaC04g20055' => 'bca', 'BcaC05g29211' => 'bca', 'BcaC07g40590' => 'bca', 'BcaC08g43662' => 'bca', 'BcaC08g43664' => 'bca', 'BcaC08g44228' => 'bca', 'BolC3t13985H' => 'bol', 'BolC3t18118H' => 'bol', 'BolC3t21633H' => 'bol', 'BolC4t23052H' => 'bol', 'BolC6t36167H' => 'bol', 'BolC6t36830H' => 'bol', 'BolC9t57683H' => 'bol', 'BolC9t58999H' => 'bol', 'BraA03t10632Z' => 'bra', 'BraA05t20622Z' => 'bra', 'BraA06t26309Z' => 'bra', 'BraA08t32072Z' => 'bra', 'BraA10t43501Z' => 'bra', 'BraSC56t46392Z' => 'bra', 'C03p15470' => 'bna', 'C03p58570' => 'bna', 'C03p93350' => 'bna', 'C04p14780' => 'bna', 'C06p16300' => 'bna', 'C08p42160' => 'bna', 'C09p48330' => 'bna', 'C09p61610' => 'bna', 'CAN.G1055.2' => 'can', 'CAN.G123.3' => 'can', 'CAN.G1241.17' => 'can', 'CAN.G337.20' => 'can', 'CAN.G469.4' => 'can', 'CAN.G492.30' => 'can', 'CAN.G553.20' => 'can', 'CAN.G626.20' => 'can', 'CAN.G890.75' => 'can', 'CANSAT11G1841' => 'cansat', 'CANSAT25G0563' => 'cansat', 'CANSAT56G1177' => 'cansat', 'CANSAT56G1842' => 'cansat', 'CANSAT56G4457' => 'cansat', 'CARHR045640' => 'chi', 'CARHR087700' => 'chi', 'CARHR107840' => 'chi', 'CARHR243970' => 'chi', 'CARHR270510' => 'chi', 'Carub.0001s4430' => 'cru', 'Carub.0001s4452' => 'cru', 'Carub.0003s1245' => 'cru', 'Carub.0003s3172' => 'cru', 'Carub.0007s0466' => 'cru', 'Carub.0008s1724' => 'cru', 'Ca_06385_v3' => 'car', 'Ca_20178_v3' => 'car', 'Ca_23588_v3' => 'car', 'Ca_24962_v3' => 'car', 'Ca_29966_v3' => 'car', 'CBR_g22982' => 'cbr', 'CBR_g26147' => 'cbr', 'CBR_g32072' => 'cbr', 'CBR_g41302' => 'cbr', 'CBR_g46439' => 'cbr', 'Cc04_g02110' => 'ccan', 'Cc05_g14780' => 'ccan', 'Cc06_g11160' => 'ccan', 'Cc07_g11640' => 'ccan', 'CDE04G1452' => 'cde', 'CDE04G2926' => 'cde', 'CDE05G0521' => 'cde', 'CDE05G0623' => 'cde', 'CDE05G0661' => 'cde', 'CDE07G1605' => 'cde', 'Cfa000059' => 'cfa', 'Cfa003100' => 'cfa', 'Cfa020216' => 'cfa', 'Cfa020217' => 'cfa', 'Ciclev10008523m.g' => 'ccl', 'Ciclev10009063m.g' => 'ccl', 'CiPaw.03G218100' => 'cil', 'CiPaw.07G004200' => 'cil', 'CiPaw.09G106600' => 'cil', 'CiPaw.11G202100' => 'cil', 'ClCG01G020830' => 'cla', 'ClCG09G021050' => 'cla', 'COL.COLO4_02647' => 'col', 'COL.COLO4_09804' => 'col', 'COL.COLO4_18223' => 'col', 'COL.COLO4_18224' => 'col', 'COL.COLO4_22536' => 'col', 'Cpa.g.sc12.177' => 'cpa', 'Cpa.g.sc27.251' => 'cpa', 'Cpa.g.sc55.185' => 'cpa', 'Cre10.g466750' => 'cre', 'Cre17.g713850' => 'cre', 'CsaV3_2G017890' => 'csa', 'CsaV3_6G047800' => 'csa', 'CsaV3_7G018620' => 'csa', 'CSS0003072' => 'camsi', 'CSS0009537' => 'camsi', 'CSS0009950' => 'camsi', 'CSS0013877' => 'camsi', 'CSS0023998' => 'camsi', 'CSS0026018' => 'camsi', 'CSS0026852' => 'camsi', 'CSS0029099' => 'camsi', 'CSS0043861' => 'camsi', 'CSS0044287' => 'camsi', 'CSS0044826' => 'camsi', 'DCAR_013222' => 'dca', 'DCAR_017087' => 'dca', 'DCAR_032248' => 'dca', 'Dinv04406' => 'din', 'Dinv04557' => 'din', 'Dinv30392' => 'din', 'Dinv36749' => 'din', 'Dinv40172' => 'din', 'Dinv42298' => 'din', 'Duzib147G1388' => 'dzi', 'Duzib168G0024' => 'dzi', 'Duzib213G0174' => 'dzi', 'ECA232G3761' => 'eca', 'ECA234G2581' => 'eca', 'ECA236G0418' => 'eca', 'ECA238G2872' => 'eca', 'ECA240G3456' => 'eca', 'ECA246G3133' => 'eca', 'EL10Ac4g07608' => 'bvu', 'EL10Ac4g08421' => 'bvu', 'EL10Ac4g08422' => 'bvu', 'Eucgr.C00914' => 'egr', 'Eucgr.F03698' => 'egr', 'Eucgr.J02527' => 'egr', 'FAN11G1246' => 'fan', 'FAN16G1863' => 'fan', 'FAN19G0124' => 'fan', 'FAN19G1834' => 'fan', 'FAN21G1318' => 'fan', 'FAN23G3039' => 'fan', 'FAN26G1224' => 'fan', 'FAN26G2695' => 'fan', 'FAN26G3274' => 'fan', 'FAN28G0616' => 'fan', 'FAN28G1918' => 'fan', 'FvH4_1g07140' => 'fve', 'FvH4_1g10540' => 'fve', 'FvH4_3g29510' => 'fve', 'Glyma.01G160000' => 'gma', 'Glyma.02G042000' => 'gma', 'Glyma.02G299100' => 'gma', 'Glyma.07G058800' => 'gma', 'Glyma.08G327400' => 'gma', 'Glyma.11G084100' => 'gma', 'Glyma.14G014700' => 'gma', 'Glyma.16G027700' => 'gma', 'Glyma.16G118800' => 'gma', 'Glyma.18G080000' => 'gma', 'Gohir.A01G089900' => 'ghi', 'Gohir.A02G177000' => 'ghi', 'Gohir.A13G134101' => 'ghi', 'Gohir.A13G193700' => 'ghi', 'Gohir.D01G075200' => 'ghi', 'Gohir.D03G002900' => 'ghi', 'Gohir.D13G137600' => 'ghi', 'Gohir.D13G199500' => 'ghi', 'Gorai.002G098400' => 'gra', 'Gorai.003G003100' => 'gra', 'Gorai.013G154200' => 'gra', 'Gorai.013G228200' => 'gra', 'GSVIVG01003478001' => 'vvi', 'GSVIVG01003838001' => 'vvi', 'GSVIVG01014639001' => 'vvi', 'GSVIVG01015228001' => 'vvi', 'HanXRQChr03g0077731' => 'han', 'HanXRQChr04g0112571' => 'han', 'HanXRQChr04g0119361' => 'han', 'HanXRQChr05g0149311' => 'han', 'HanXRQChr09g0276371' => 'han', 'HanXRQChr11g0324721' => 'han', 'HanXRQChr11g0333431' => 'han', 'HanXRQChr12g0354721' => 'han', 'HanXRQChr14g0431241' => 'han', 'HanXRQChr14g0442381' => 'han', 'Haze_03676' => 'cav', 'Haze_06992' => 'cav', 'Haze_09801' => 'cav', 'Haze_09802' => 'cav', 'Haze_25900' => 'cav', 'Haze_27653' => 'cav', 'Hma1.2p1_0036F.1_g022660' => 'hma', 'Hma1.2p1_0388F.1_g142210' => 'hma', 'Hma1.2p1_0657F.1_g196890' => 'hma', 'Hma1.2p1_0663F.1_g198760' => 'hma', 'Hma1.2p1_0663F.1_g198900' => 'hma', 'Hma1.2p1_0800F.1_g219950' => 'hma', 'Hma1.2p1_0800F.1_g219960' => 'hma', 'Hma1.2p1_2491F.1_g323230' => 'hma', 'HPP92_005550' => 'vpl', 'HPP92_020398' => 'vpl', 'HPP92_022693' => 'vpl', 'HPP92_022695' => 'vpl', 'HPP92_024891' => 'vpl', 'Hund03616' => 'sun', 'Hund10417' => 'sun', 'Lalb_Chr05g0211931' => 'lal', 'Lalb_Chr10g0100221' => 'lal', 'Lalb_Chr10g0107381' => 'lal', 'Lalb_Chr15g0081981' => 'lal', 'Lalb_Chr17g0342301' => 'lal', 'Lalb_Chr17g0348881' => 'lal', 'Lalb_Chr20g0113991' => 'lal', 'Lj1C888T3' => 'lonja', 'Lj1C888T4' => 'lonja', 'Lj2g0003640' => 'lja', 'Lj2P259T13' => 'lonja', 'Lj3g0022427' => 'lja', 'Lj4A232T48' => 'lonja', 'Lj4C309G3' => 'lonja', 'Lj5A47T39' => 'lonja', 'Lj6g0007553' => 'lja', 'Lj8P177T19' => 'lonja', 'LjContig00081g0010826' => 'lja', 'Lsat_1_v5_gn_2_74441' => 'lsa', 'Lsat_1_v5_gn_4_95580' => 'lsa', 'Lsat_1_v5_gn_5_145700' => 'lsa', 'Lsat_1_v5_gn_7_113221' => 'lsa', 'Lsat_1_v5_gn_9_21861' => 'lsa', 'Lsat_1_v5_gn_9_90540' => 'lsa', 'Manes.02G112600' => 'mes', 'Manes.03G031800' => 'mes', 'Manes.03G139860' => 'mes', 'Manes.15G062000' => 'mes', 'Mapoly0010s0095' => 'mpo', 'Mapoly0029s0059' => 'mpo', 'Mapoly0076s0098' => 'mpo', 'MBI08_g24262_MAGBIO' => 'mbi', 'MBI08_g24263_MAGBIO' => 'mbi', 'MBI19_g42006_MAGBIO' => 'mbi', 'MBI19_g44081_MAGBIO' => 'mbi', 'MBI19_g45745_MAGBIO' => 'mbi', 'MCO02G080' => 'mco', 'MCO05G462' => 'mco', 'MCO15G451' => 'mco', 'MD02G1075400' => 'mdo', 'MD02G1075800' => 'mdo', 'MD02G1119500' => 'mdo', 'MD02G1119600' => 'mdo', 'MD02G1238300' => 'mdo', 'MD03G1187100' => 'mdo', 'MD11G1202100' => 'mdo', 'MD15G1233400' => 'mdo', 'Medtr3g058410' => 'mtr', 'Medtr5g023760' => 'mtr', 'Medtr5g095470' => 'mtr', 'Medtr8g028040' => 'mtr', 'MELO3C003551.2' => 'cme', 'MELO3C007969.2' => 'cme', 'MELO3C023285.2' => 'cme', 'MELO3C024900.2' => 'cme', 'Migut.H01771' => 'egut', 'Migut.J00592' => 'egut', 'Migut.K00586' => 'egut', 'Migut.M01431' => 'egut', 'Migut.M01667' => 'egut', 'MSTRG.10574' => 'ama', 'MSTRG.13014' => 'ama', 'MSTRG.15786' => 'ama', 'MSTRG.16042' => 'ama', 'MSTRG.19528' => 'ama', 'MSTRG.6989' => 'ama', 'Nitab4.5_0000461g0140' => 'nta', 'Nitab4.5_0000540g0230' => 'nta', 'Nitab4.5_0000702g0070' => 'nta', 'Nitab4.5_0002967g0050' => 'nta', 'Nitab4.5_0003491g0050' => 'nta', 'Nitab4.5_0006756g0030' => 'nta', 'Nitab4.5_0009088g0010' => 'nta', 'Nitab4.5_0010958g0010' => 'nta', 'Nitab4.5_0028970g0010' => 'nta', 'Nn1g03217' => 'nnu', 'Nn5g30958' => 'nnu', 'Nn6g35428' => 'nnu', 'Oeu002772.1' => 'oeu', 'Oeu034557.1' => 'oeu', 'Oeu037597.1' => 'oeu', 'Oeu041430.1' => 'oeu', 'Oeu044497.1' => 'oeu', 'Oeu049350.2' => 'oeu', 'Oeu057088.1' => 'oeu', 'Os03g0133900' => 'osa', 'Os03g0185000' => 'osa', 'Os03g0196600' => 'osa', 'Os05g0533500' => 'osa', 'Peaxi162Scf00079g00143' => 'pax', 'Peaxi162Scf00285g00073' => 'pax', 'Peaxi162Scf00498g00131' => 'pax', 'Peaxi162Scf00515g00045' => 'pax', 'Peaxi162Scf01183g00139' => 'pax', 'PGR031G1944' => 'pgr', 'PGR083G1606' => 'pgr', 'PGR102G2788' => 'pgr', 'PGR142G2479' => 'pgr', 'PGSC0003DMG400000282' => 'stu', 'PGSC0003DMG400001573' => 'stu', 'PGSC0003DMG400014379' => 'stu', 'PGSC0003DMG400022181' => 'stu', 'Phvul.001G170600' => 'pvu', 'Phvul.002G114700' => 'pvu', 'Phvul.003G269000' => 'pvu', 'Phvul.006G055200' => 'pvu', 'Phvul.008G277800' => 'pvu', 'Phvul.010G110600' => 'pvu', 'Potri.001G365500' => 'ptr', 'Potri.005G099700' => 'ptr', 'Potri.011G068001' => 'ptr', 'Potri.013G109500' => 'ptr', 'Potri.015G147000' => 'ptr', 'Pp3c20_3500' => 'ppa', 'Pp3c23_17150' => 'ppa', 'Pp3c23_21600' => 'ppa', 'Pp3c24_14040' => 'ppa', 'Pp3c8_18470' => 'ppa', 'PRCOL_00000029' => 'pco', 'PRCOL_00002113' => 'pco', 'PRCOL_00002366' => 'pco', 'Prupe.4G239400' => 'ppe', 'Prupe.4G239500' => 'ppe', 'Prupe.7G179500' => 'ppe', 'Prupe.7G212700' => 'ppe', 'Psat2g008240' => 'psa', 'Psat2g008280' => 'psa', 'Psat2g008320' => 'psa', 'Psat2g129920' => 'psa', 'Psat4g158520' => 'psa', 'Psat5g173800' => 'psa', 'Psat7g256840' => 'psa', 'PSO063G0739' => 'pso', 'PSO063G2203' => 'pso', 'PSO063G5440' => 'pso', 'PSO170G5797' => 'pso', 'PSO541G0062' => 'pso', 'PSO541G3229' => 'pso', 'PSO675G0721' => 'pso', 'PSO675G9329' => 'pso', 'PSO832G0250' => 'pso', 'PSO832G2046' => 'pso', 'PSO832G4406' => 'pso', 'QL02p063027' => 'qlo', 'QL05p068287' => 'qlo', 'QL05p068781' => 'qlo', 'QL06p052727' => 'qlo', 'QL06p053842' => 'qlo', 'QL08p004961' => 'qlo', 'RcHm_v2.0_Chr2g0093021' => 'rch', 'RcHm_v2.0_Chr2g0097471' => 'rch', 'RcHm_v2.0_Chr2g0097591' => 'rch', 'RcHm_v2.0_Chr5g0054471' => 'rch', 'Rhsim04G0014100' => 'rsi', 'Rhsim08G0232100' => 'rsi', 'Rhsim10G0198900' => 'rsi', 'Rhsim13G0142600' => 'rsi', 'Sabra05G0082400' => 'sbr', 'Sabra13G0094400' => 'sbr', 'Sabra15G0156000' => 'sbr', 'Sabra16G0239100' => 'sbr', 'SalBow6G3897' => 'sbo', 'SalBow8G0744' => 'sbo', 'SalBow8G0917' => 'sbo', 'Sc03g0011120' => 'sci', 'Sc07g0001310' => 'sci', 'Sc16g0007950' => 'sci', 'Sed0000282' => 'sed', 'Sed0002951' => 'sed', 'Sed0005975' => 'sed', 'Sed0015535' => 'sed', 'Sed0019186' => 'sed', 'SEGI_03940' => 'sgi', 'SEGI_11183' => 'sgi', 'SEGI_27318' => 'sgi', 'SEGI_39826' => 'sgi', 'SGA_v2.0_scaffold168G38538' => 'sas', 'SGA_v2.0_scaffold62G21593' => 'sas', 'SGA_v2.0_scaffold630G53289' => 'sas', 'SGA_v2.0_scaffold8G04394' => 'sas', 'SHI24909' => 'shi', 'SMO134G0076' => 'smo', 'SMO143G0050' => 'smo', 'SMO358G0382' => 'smo', 'Solyc02g082850.3' => 'sly', 'Solyc07g065340.1' => 'sly', 'Solyc10g006040.1' => 'sly', 'Solyc12g008780.2' => 'sly', 'Sopen02g027650' => 'spe', 'Sopen07g033540' => 'spe', 'Sopen10g002000' => 'spe', 'Sopen12g003710' => 'spe', 'Sp1g41530' => 'spa', 'Sp3g11280' => 'spa', 'Sp3g30970' => 'spa', 'Sp6g18510' => 'spa', 'Sp7g33410' => 'spa', 'TAR383G0004' => 'tar', 'TAR625G0710' => 'tar', 'TAR626G1619' => 'tar', 'TAR629G0660' => 'tar', 'TAR629G3524' => 'tar', 'THA.LOC104807433' => 'tha', 'THA.LOC104811741' => 'tha', 'THA.LOC104815701' => 'tha', 'THA.LOC104817749' => 'tha', 'THA.LOC104822738' => 'tha', 'Thecc.01G007200' => 'tca', 'Thecc.06G237500' => 'tca', 'Thecc.07G017000' => 'tca', 'Thecc.09G092300' => 'tca', 'Thhalv10012384m.g' => 'esa', 'Thhalv10014167m.g' => 'esa', 'Thhalv10020893m.g' => 'esa', 'Thhalv10022779m.g' => 'esa', 'Thhalv10025792m.g' => 'esa', 'TPR.G1097' => 'tpr', 'TPR.G25139' => 'tpr', 'TPR.G27357' => 'tpr', 'TPR.G8597' => 'tpr', 'TWI34G0677' => 'twi', 'TWI38G2328' => 'twi', 'TWI39G1095' => 'twi', 'TWI53G0535' => 'twi', 'TWI63G1380' => 'twi', 'TWI63G1837' => 'twi', 'TWI73G0347' => 'twi', 'unitig_62.g23296' => 'ugi', 'unitig_699.g19416' => 'ugi', 'unitig_85.g27347' => 'ugi', 'vmacro09660' => 'vma', 'vmacro09661' => 'vma', 'vmacro18815' => 'vma', 'vmacro20523' => 'vma', 'VMungo0251G1201' => 'vmu', 'VMungo0331G1032' => 'vmu', 'VMungo0540G0152' => 'vmu', 'VMungo0647G0913' => 'vmu', 'VMungo1215G1556' => 'vmu', 'VMungo1215G2799' => 'vmu', 'VMungo1383G0928' => 'vmu', 'Zm00001eb002740' => 'zma', 'Zm00001eb293180' => 'zma', 'Zm00001eb361640' => 'zma' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D001205' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001205' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D001205' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001205' )include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151