Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c23_15810 Physcomitrium patens HOM05D005554 ORTHO05D007823 0.0e+00 1189.5 607 100.0
Pp3c24_18820 Physcomitrium patens HOM05D005554 ORTHO05D007823 2.3e-228 795.8 518 75.1
AagrBONN_evm.TU.Sc2ySwM_228.1600 Anthoceros agrestis HOM05D005554 ORTHO05D007823 1.1e-219 766.9 537 70.8
Mapoly0091s0082 Marchantia polymorpha HOM05D005554 ORTHO05D007823 6.3e-218 761.1 510 73.3
Peaxi162Scf00119g01015 Petunia axillaris HOM05D005554 ORTHO05D007823 1.8e-204 716.5 552 64.7
PSO782G1990 Papaver somniferum HOM05D005554 ORTHO05D007823 6.7e-204 714.5 518 66.0
PSO478G3044 Papaver somniferum HOM05D005554 ORTHO05D007823 1.2e-203 713.8 518 66.4
PGSC0003DMG402012338 Solanum tuberosum HOM05D005554 ORTHO05D007823 1.2e-203 713.8 512 67.8
SMO147G0132 Selaginella moellendorffii HOM05D005554 ORTHO05D007823 4.4e-203 711.8 508 70.1
PGR031G2745 Punica granatum HOM05D005554 ORTHO05D007823 5.7e-203 711.4 537 64.6
Actinidia14567 Actinidia chinensis HOM05D005554 ORTHO05D007823 2.8e-202 709.1 518 66.0
Solyc08g081170.4 Solanum lycopersicum HOM05D005554 ORTHO05D007823 4.8e-202 708.4 512 67.2
Sopen08g029470 Solanum pennellii HOM05D005554 ORTHO05D007823 1.1e-201 707.2 512 67.0
Atru.chr9.2175 Acer truncatum HOM05D005554 ORTHO05D007823 1.8e-201 706.4 541 64.3
Gohir.D12G231000 Gossypium hirsutum HOM05D005554 ORTHO05D007823 1.8e-201 706.4 555 63.8
Ciclev10018956m.g Citrus clementina HOM05D005554 ORTHO05D007823 4.1e-201 705.3 541 64.1
CiPaw.12G092300 Carya illinoinensis HOM05D005554 ORTHO05D007823 5.3e-201 704.9 548 63.7
QL12p032791 Quercus lobata HOM05D005554 ORTHO05D007823 7.0e-201 704.5 518 66.0
Nitab4.5_0001615g0110 Nicotiana tabacum HOM05D005554 ORTHO05D007823 9.1e-201 704.1 588 61.6
Potri.001G103300 Populus trichocarpa HOM05D005554 ORTHO05D007823 1.2e-200 703.7 551 63.9
Gohir.A12G229900 Gossypium hirsutum HOM05D005554 ORTHO05D007823 2.0e-200 703.0 558 62.9
CAN.G774.53 Capsicum annuum HOM05D005554 ORTHO05D007823 2.7e-200 702.6 518 65.8
CANSAT21G2493 Cannabis sativa HOM05D005554 ORTHO05D007823 3.5e-200 702.2 518 66.0
Cpa.g.sc74.56 Carica papaya HOM05D005554 ORTHO05D007823 3.5e-200 702.2 541 63.0
Nn6g33413 Nelumbo nucifera HOM05D005554 ORTHO05D007823 3.5e-200 702.2 539 64.4
COL.COLO4_34475 Corchorus olitorius HOM05D005554 ORTHO05D007823 5.9e-200 701.4 537 63.9
Dinv38934 Davidia involucrata HOM05D005554 ORTHO05D007823 5.9e-200 701.4 518 65.6
Prupe.5G101100 Prunus persica HOM05D005554 ORTHO05D007823 1.0e-199 700.7 552 63.2
Aqoxy7G00299 Aquilegia oxysepala HOM05D005554 ORTHO05D007823 1.3e-199 700.3 539 63.8
CBR_g32224 Chara braunii HOM05D005554 ORTHO05D007823 1.3e-199 700.3 511 66.1
Migut.E01089 Erythranthe guttata HOM05D005554 ORTHO05D007823 1.7e-199 699.9 518 66.6
FAN04G0002 Fragaria x ananassa HOM05D005554 ORTHO05D007823 1.7e-199 699.9 536 64.0
MBI18_g45367_MAGBIO Magnolia biondii HOM05D005554 ORTHO05D007823 2.2e-199 699.5 545 63.1
Gorai.008G247200 Gossypium raimondii HOM05D005554 ORTHO05D007823 3.8e-199 698.7 555 63.4
RcHm_v2.0_Chr7g0197491 Rosa chinensis HOM05D005554 ORTHO05D007823 5.0e-199 698.4 536 64.0
FAN13G2706 Fragaria x ananassa HOM05D005554 ORTHO05D007823 8.5e-199 697.6 536 63.8
TAR375G0921 Trochodendron aralioides HOM05D005554 ORTHO05D007823 1.1e-198 697.2 518 65.3
FAN18G3000 Fragaria x ananassa HOM05D005554 ORTHO05D007823 1.9e-198 696.4 536 63.4
Thecc.03G279900 Theobroma cacao HOM05D005554 ORTHO05D007823 2.5e-198 696.0 559 62.4
Lj2C185T6 Lonicera japonica HOM05D005554 ORTHO05D007823 4.2e-198 695.3 521 64.3
Cc08_g14820 Coffea canephora HOM05D005554 ORTHO05D007823 5.5e-198 694.9 517 64.6
Oeu064085.1 Olea europaea HOM05D005554 ORTHO05D007823 1.6e-197 693.3 547 62.7
SalBow1G4020 Salvia bowleyana HOM05D005554 ORTHO05D007823 3.6e-197 692.2 551 62.3
CSS0044545 Camellia sinensis var. sinensis HOM05D005554 ORTHO05D007823 6.1e-197 691.4 543 63.0
Duzib205G0518 Durio zibethinus HOM05D005554 ORTHO05D007823 8.0e-197 691.0 535 63.9
Hma1.2p1_0377F.1_g139310 Hydrangea macrophylla HOM05D005554 ORTHO05D007823 1.8e-196 689.9 564 61.7
MD06G1085100 Malus domestica HOM05D005554 ORTHO05D007823 1.8e-196 689.9 552 62.7
Manes.02G019800 Manihot esculenta HOM05D005554 ORTHO05D007823 8.8e-196 687.6 535 62.6
FAN08G3292 Fragaria x ananassa HOM05D005554 ORTHO05D007823 2.0e-195 686.4 536 63.2
ATR0680G162 Amborella trichopoda HOM05D005554 ORTHO05D007823 4.4e-195 685.3 511 65.9
TWI15G0555 Tripterygium wilfordii HOM05D005554 ORTHO05D007823 1.3e-194 683.7 533 62.9
CDE05G1777 Ceratophyllum demersum HOM05D005554 ORTHO05D007823 3.7e-194 682.2 518 64.7
Nitab4.5_0010813g0010 Nicotiana tabacum HOM05D005554 ORTHO05D007823 2.4e-193 679.5 595 58.8
Sabra01G0078000 Salix brachista HOM05D005554 ORTHO05D007823 4.1e-193 678.7 599 58.4
DCAR_000617 Daucus carota HOM05D005554 ORTHO05D007823 3.5e-192 675.6 518 63.1
CsaV3_5G002730 Cucumis sativus L. HOM05D005554 ORTHO05D007823 4.5e-192 675.2 518 63.3
MELO3C005683.2 Cucumis melo HOM05D005554 ORTHO05D007823 1.0e-191 674.1 518 63.1
Eucgr.D01840 Eucalyptus grandis HOM05D005554 ORTHO05D007823 1.0e-191 674.1 555 60.5
Gohir.A03G016800 Gossypium hirsutum HOM05D005554 ORTHO05D007823 1.7e-191 673.3 546 61.9
Gorai.003G158300 Gossypium raimondii HOM05D005554 ORTHO05D007823 2.9e-191 672.5 546 62.1
MSTRG.13839 Avicennia marina HOM05D005554 ORTHO05D007823 2.5e-190 669.5 518 62.9
THA.LOC104823588 Tarenaya hassleriana HOM05D005554 ORTHO05D007823 2.5e-190 669.5 550 60.0
HPP92_014728 Vanilla planifolia HOM05D005554 ORTHO05D007823 5.5e-190 668.3 514 62.8
ECA246G2370 Erigeron canadensis HOM05D005554 ORTHO05D007823 5.7e-187 658.3 521 60.5
FvH4_5g02610 Fragaria vesca HOM05D005554 ORTHO05D007823 2.7e-184 649.4 506 62.6
vmacro11364 Vaccinium macrocarpon HOM05D005554 ORTHO05D007823 1.3e-183 647.1 610 54.9
Lalb_Chr05g0224711 Lupinus albus HOM05D005554 ORTHO05D007823 6.6e-183 644.8 560 58.6
Sp2g00970 Schrenkiella parvula HOM05D005554 ORTHO05D007823 8.6e-183 644.4 520 60.8
Thhalv10023292m.g Eutrema salsugineum HOM05D005554 ORTHO05D007823 1.1e-182 644.0 520 61.0
arahy.Tifrunner.gnm1.ann1.C4WXPV Arachis hypogaea HOM05D005554 ORTHO05D007823 1.5e-182 643.7 518 61.2
Sc01g0009640 Simmondsia chinensis HOM05D005554 ORTHO05D007823 1.5e-182 643.7 541 59.0
Ah.10g034840 Amaranthus hybridus HOM05D005554 ORTHO05D007823 4.3e-182 642.1 546 59.0
arahy.Tifrunner.gnm1.ann1.CVD0A8 Arachis hypogaea HOM05D005554 ORTHO05D007823 7.3e-182 641.3 518 61.2
Glyma.05G208600 Glycine max HOM05D005554 ORTHO05D007823 7.3e-182 641.3 543 58.9
Glyma.05G208921 Glycine max HOM05D005554 ORTHO05D007823 7.3e-182 641.3 543 58.9
Glyma.08G015200 Glycine max HOM05D005554 ORTHO05D007823 7.3e-182 641.3 512 61.9
Aa31LG2G890 Aethionema arabicum HOM05D005554 ORTHO05D007823 1.2e-181 640.6 518 60.4
Hund14815 Selenicereus undatus HOM05D005554 ORTHO05D007823 2.1e-181 639.8 517 59.6
AL2G11550 Arabidopsis lyrata HOM05D005554 ORTHO05D007823 3.6e-181 639.0 520 61.0
Lsat_1_v5_gn_3_6620 Lactuca sativa HOM05D005554 ORTHO05D007823 4.7e-181 638.6 521 60.1
AT1G63680 Arabidopsis thaliana HOM05D005554 ORTHO05D007823 3.1e-180 636.0 520 60.4
HanXRQChr06g0165871 Helianthus annuus HOM05D005554 ORTHO05D007823 3.1e-180 636.0 521 59.3
VMungo0251G0638 Vigna mungo HOM05D005554 ORTHO05D007823 8.9e-180 634.4 556 58.5
Carub.0002s0117 Capsella rubella HOM05D005554 ORTHO05D007823 2.6e-179 632.9 520 59.8
Phvul.002G290300 Phaseolus vulgaris HOM05D005554 ORTHO05D007823 3.4e-179 632.5 556 58.1
A09p13810 Brassica napus HOM05D005554 ORTHO05D007823 4.4e-179 632.1 520 59.6
BolC9t54561H Brassica oleracea HOM05D005554 ORTHO05D007823 4.4e-179 632.1 519 59.7
BcaC04g22690 Brassica carinata HOM05D005554 ORTHO05D007823 7.5e-179 631.3 519 59.7
C09p16520 Brassica napus HOM05D005554 ORTHO05D007823 7.5e-179 631.3 519 59.7
ClCG01G002630 Citrullus lanatus HOM05D005554 ORTHO05D007823 7.5e-179 631.3 515 60.2
AUR62003173 Chenopodium quinoa HOM05D005554 ORTHO05D007823 2.2e-178 629.8 548 57.3
BcaB07g31556 Brassica carinata HOM05D005554 ORTHO05D007823 2.9e-178 629.4 521 59.3
BraA09t37033Z Brassica rapa HOM05D005554 ORTHO05D007823 2.9e-178 629.4 520 59.6
EL10Ac6g14928 Beta vulgaris HOM05D005554 ORTHO05D007823 1.1e-177 627.5 542 57.7
Medtr8g098345 Medicago truncatula HOM05D005554 ORTHO05D007823 2.4e-177 626.3 532 59.0
CARHR047660 Cardamine hirsuta HOM05D005554 ORTHO05D007823 2.0e-176 623.2 520 59.6
Ca_17525_v3 Cicer arietinum L. HOM05D005554 ORTHO05D007823 2.7e-176 622.9 558 57.9
unitig_26.g9706 Utricularia gibba HOM05D005554 ORTHO05D007823 1.7e-175 620.2 518 59.7
AUR62007990 Chenopodium quinoa HOM05D005554 ORTHO05D007823 2.3e-175 619.8 520 58.5
Psat7g032760 Pisum sativum HOM05D005554 ORTHO05D007823 8.6e-175 617.8 541 57.7
Lj4g0004686 Lotus japonicus HOM05D005554 ORTHO05D007823 7.3e-174 614.8 548 58.6
SGA_v2.0_scaffold144G35937 Striga asiatica HOM05D005554 ORTHO05D007823 1.6e-173 613.6 505 60.2
Sed0016596 Sechium edule HOM05D005554 ORTHO05D007823 3.6e-173 612.5 503 59.6
TPR.G12960 Trifolium pratense HOM05D005554 ORTHO05D007823 2.6e-171 606.3 532 57.7
Haze_08788 Corylus avellana HOM05D005554 ORTHO05D007823 4.4e-171 605.5 518 59.1
Gohir.D03G151100 Gossypium hirsutum HOM05D005554 ORTHO05D007823 4.9e-162 575.5 405 69.4
Os10g0548900 Oryza sativa ssp. japonica HOM05D005554 ORTHO05D007823 4.6e-152 542.3 514 52.9
Zm00001eb391750 Zea mays HOM05D005554 ORTHO05D007823 9.6e-150 534.6 514 53.5
Cfa012222 Carpinus fangiana HOM05D005554 ORTHO05D007823 2.9e-146 523.1 389 65.8
HPP92_020853 Vanilla planifolia HOM05D005554 ORTHO05D007823 6.4e-146 521.9 404 60.9
GSVIVG01019746001 Vitis vinifera HOM05D005554 ORTHO05D007823 2.0e-123 447.2 379 59.6
Lj2C0T8 Lonicera japonica HOM05D005554 ORTHO05D007823 3.2e-113 413.3 330 62.7
PRCOL_00002248 Prasinoderma coloniale HOM05D005554 ORTHO05D007823 3.7e-109 399.8 667 39.3
MCO12G378 Micromonas commoda HOM05D005554 ORTHO05D007823 1.5e-97 361.3 488 42.0
HPP92_008494 Vanilla planifolia HOM05D005554 ORTHO05D007823 7.4e-94 349.0 244 68.4
Cre12.g519900 Chlamydomonas reinhardtii HOM05D005554 ORTHO05D007823 1.2e-78 298.5 564 35.1
CAN.G20.10 Capsicum annuum HOM05D005554 ORTHO05D007823 1.9e-73 281.2 267 55.4
HPP92_008493 Vanilla planifolia HOM05D005554 ORTHO05D007823 1.6e-67 261.5 249 52.6
Actinidia02000 Actinidia chinensis HOM05D005554 ORTHO05D007823 2.3e-55 221.1 351 39.0
Oeu007749.1 Olea europaea HOM05D005554 ORTHO05D007823 1.3e-50 205.3 414 36.7
SEGI_34096 Sequoiadendron giganteum HOM05D005554 ORTHO05D007823 5.8e-38 163.3 99 74.7
CSS0006848 Camellia sinensis var. sinensis HOM05D005554 ORTHO05D007823 6.2e-24 116.7 83 65.1
Lj2C0T9 Lonicera japonica HOM05D005554 ORTHO05D007823 4.9e-21 107.1 111 48.6
Pp3c5_9920 Physcomitrium patens HOM05D005554 ORTHO05D007823 2.8e-16 91.3 79 73.4
Pp3c3_2590 Physcomitrium patens HOM05D005554 ORTHO05D313840 4.5e-14 84.0 86 61.6
Sabra03G0091300 Salix brachista HOM05D008679 ORTHO05D010804 1.9e-12 78.6 104 41.3
BcaB04g18522 Brassica carinata HOM05D005554 ORTHO05D021652 3.5e-11 74.3 85 45.9
Gohir.D01G027900 Gossypium hirsutum HOM05D008447 ORTHO05D010638 1.9e-09 68.6 323 23.8
MD14G1106300 Malus domestica HOM05D005554 ORTHO05D007823 1.9e-09 68.6 54 61.1
PRCOL_00000676 Prasinoderma coloniale HOM05D008447 ORTHO05D010638 1.6e-08 65.5 327 24.8
MD14G1106200 Malus domestica HOM05D005554 ORTHO05D007823 3.7e-08 64.3 41 70.7
MBI06_g27478_MAGBIO Magnolia biondii HOM05D007982 ORTHO05D010255 4.8e-08 63.9 380 26.1
BcaC06g33105 Brassica carinata HOM05D005554 ORTHO05D021652 6.3e-08 63.5 116 36.2
COL.COLO4_28736 Corchorus olitorius HOM05D008447 ORTHO05D010638 6.3e-08 63.5 392 22.2
CANSAT80G2072 Cannabis sativa HOM05D008447 ORTHO05D010638 1.8e-07 62.0 248 25.0
Gohir.D01G027950 Gossypium hirsutum HOM05D008447 ORTHO05D010638 1.8e-07 62.0 425 22.8
Gohir.A01G040200 Gossypium hirsutum HOM05D008447 ORTHO05D010638 2.4e-07 61.6 334 23.7
TAR369G0905 Trochodendron aralioides HOM05D008447 ORTHO05D010638 3.1e-07 61.2 262 25.2
CANSAT80G0811 Cannabis sativa HOM05D008447 ORTHO05D010638 4.1e-07 60.8 248 24.6
Prupe.7G070400 Prunus persica HOM05D008447 ORTHO05D010638 9.0e-07 59.7 247 23.9
PSO384G3680 Papaver somniferum HOM05D008447 ORTHO05D010638 2.6e-06 58.2 244 24.2
Nn4g25166 Nelumbo nucifera HOM05D007982 ORTHO05D010255 4.5e-06 57.4 372 25.8
Pp3c10_15450 Physcomitrium patens HOM05D008447 ORTHO05D010638 5.9e-06 57.0 291 24.7
Rhsim04G0099000 Rhododendron simsii HOM05D008447 ORTHO05D010638 5.9e-06 57.0 283 21.6


User provided reference genes

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